PDB Short entry for 3HAO HEADER TRANSPORT PROTEIN 02-MAY-09 3HAO TITLE CRYSTAL STRUCTURE OF BACTERIORHODOPSIN MUTANT L94A CRYSTALLIZED FROM TITLE 2 BICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIORHODOPSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BR; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM; SOURCE 3 ORGANISM_COMMON: HALOBACTERIUM HALOBIUM; SOURCE 4 ORGANISM_TAXID: 2242; SOURCE 5 GENE: BOP, VNG_1467G; SOURCE 6 EXPRESSION_SYSTEM: HALOBACTERIUM SALINARUM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 2242; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: L33 KEYWDS BACTERIORHODOPSIN, PACKING FORCE, VAN DER WAALS, EVOLUTIONARY KEYWDS 2 CONSTRAINT, MEMBRANE PROTEIN, INTEGRAL MEMBRANE PROTEIN, HELICAL KEYWDS 3 MEMBRANE PROTEIN, PROTON TRANSPORT, CELL MEMBRANE, CHROMOPHORE, KEYWDS 4 HYDROGEN ION TRANSPORT, ION TRANSPORT, MEMBRANE, PHOTORECEPTOR KEYWDS 5 PROTEIN, PYRROLIDONE CARBOXYLIC ACID, RECEPTOR, RETINAL PROTEIN, KEYWDS 6 SENSORY TRANSDUCTION, TRANSMEMBRANE, TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.H.JOH,D.YANG,J.U.BOWIE REVDAT 3 13-OCT-21 3HAO 1 REMARK SEQADV LINK REVDAT 2 01-NOV-17 3HAO 1 REMARK REVDAT 1 22-SEP-09 3HAO 0 JRNL AUTH N.H.JOH,A.OBERAI,D.YANG,J.P.WHITELEGGE,J.U.BOWIE JRNL TITL SIMILAR ENERGETIC CONTRIBUTIONS OF PACKING IN THE CORE OF JRNL TITL 2 MEMBRANE AND WATER-SOLUBLE PROTEINS. JRNL REF J.AM.CHEM.SOC. V. 131 10846 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19603754 JRNL DOI 10.1021/JA904711K REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 313.00 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 16320 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 893 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3492 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.04400 REMARK 3 B22 (A**2) : 0.98600 REMARK 3 B33 (A**2) : -4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.82700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 97.61 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : RET.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-09. REMARK 100 THE DEPOSITION ID IS D_1000052902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17053 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9050 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 350UL 4M NAPI, 2.5UL 6M 1.6 REMARK 280 -HEXANEDIOL, 17.5UL 100% TRIETHYLENE GLYCOL, 130UL H2O, PH 3.7, REMARK 280 HANGING DROP, BICELLE METHOD, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.35700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 GLU A 232 REMARK 465 ALA A 233 REMARK 465 GLU A 234 REMARK 465 ALA A 235 REMARK 465 PRO A 236 REMARK 465 GLU A 237 REMARK 465 PRO A 238 REMARK 465 SER A 239 REMARK 465 ALA A 240 REMARK 465 GLY A 241 REMARK 465 ASP A 242 REMARK 465 GLY A 243 REMARK 465 ALA A 244 REMARK 465 ALA A 245 REMARK 465 ALA A 246 REMARK 465 THR A 247 REMARK 465 SER A 248 REMARK 465 ASP A 249 REMARK 465 GLN B 1 REMARK 465 ALA B 2 REMARK 465 GLN B 3 REMARK 465 ILE B 4 REMARK 465 THR B 5 REMARK 465 GLU B 232 REMARK 465 ALA B 233 REMARK 465 GLU B 234 REMARK 465 ALA B 235 REMARK 465 PRO B 236 REMARK 465 GLU B 237 REMARK 465 PRO B 238 REMARK 465 SER B 239 REMARK 465 ALA B 240 REMARK 465 GLY B 241 REMARK 465 ASP B 242 REMARK 465 GLY B 243 REMARK 465 ALA B 244 REMARK 465 ALA B 245 REMARK 465 ALA B 246 REMARK 465 THR B 247 REMARK 465 SER B 248 REMARK 465 ASP B 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET B 145 CD2 LEU B 149 1.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 101 C ASP A 102 N 0.155 REMARK 500 ALA A 126 N ALA A 126 CA -0.139 REMARK 500 ILE A 140 C ILE A 140 O -0.219 REMARK 500 ALA A 160 C GLU A 161 N -0.158 REMARK 500 GLU A 161 CD GLU A 161 OE1 -0.134 REMARK 500 ARG A 164 C ARG A 164 O -0.162 REMARK 500 GLU A 166 CA GLU A 166 CB -0.147 REMARK 500 GLU A 166 CD GLU A 166 OE1 -0.086 REMARK 500 GLU A 166 CD GLU A 166 OE2 -0.079 REMARK 500 LYS A 172 CA LYS A 172 CB -0.147 REMARK 500 ARG A 175 CZ ARG A 175 NH1 -0.164 REMARK 500 ARG A 175 CZ ARG A 175 NH2 -0.169 REMARK 500 ARG A 175 C ARG A 175 O -0.156 REMARK 500 ASN A 202 CA ASN A 202 CB -0.167 REMARK 500 PHE A 230 CG PHE A 230 CD2 -0.126 REMARK 500 PHE A 230 CD1 PHE A 230 CE1 -0.155 REMARK 500 PHE A 230 CE1 PHE A 230 CZ -0.230 REMARK 500 PHE A 230 CZ PHE A 230 CE2 -0.241 REMARK 500 ARG B 7 CZ ARG B 7 NH1 -0.119 REMARK 500 ARG B 7 CZ ARG B 7 NH2 -0.122 REMARK 500 GLU B 9 CB GLU B 9 CG -0.116 REMARK 500 GLU B 9 CG GLU B 9 CD -0.099 REMARK 500 GLU B 9 CD GLU B 9 OE1 -0.121 REMARK 500 GLU B 9 CD GLU B 9 OE2 -0.144 REMARK 500 GLU B 9 C GLU B 9 O -0.163 REMARK 500 ILE B 11 CB ILE B 11 CG2 -0.273 REMARK 500 ILE B 11 C ILE B 11 O -0.140 REMARK 500 TRP B 12 CG TRP B 12 CD1 -0.132 REMARK 500 TRP B 12 CD1 TRP B 12 NE1 -0.113 REMARK 500 TRP B 12 CE2 TRP B 12 CD2 -0.101 REMARK 500 TRP B 12 C TRP B 12 O -0.128 REMARK 500 LEU B 13 C LEU B 13 O -0.127 REMARK 500 LYS B 30 CB LYS B 30 CG -0.194 REMARK 500 LYS B 40 CG LYS B 40 CD -0.237 REMARK 500 LYS B 40 C LYS B 40 O -0.129 REMARK 500 LYS B 41 N LYS B 41 CA -0.138 REMARK 500 LYS B 41 CD LYS B 41 CE -0.168 REMARK 500 LYS B 41 CE LYS B 41 NZ -0.231 REMARK 500 LYS B 41 C LYS B 41 O -0.180 REMARK 500 TYR B 43 CD1 TYR B 43 CE1 -0.182 REMARK 500 TYR B 43 CE1 TYR B 43 CZ -0.103 REMARK 500 TYR B 43 CE2 TYR B 43 CD2 -0.165 REMARK 500 TYR B 43 C TYR B 43 O -0.169 REMARK 500 LEU B 66 CG LEU B 66 CD2 -0.245 REMARK 500 LEU B 66 C LEU B 66 O -0.161 REMARK 500 LEU B 66 C THR B 67 N -0.140 REMARK 500 MET B 68 CG MET B 68 SD -0.185 REMARK 500 ARG B 82 N ARG B 82 CA -0.127 REMARK 500 ARG B 82 NE ARG B 82 CZ -0.082 REMARK 500 ARG B 82 CZ ARG B 82 NH1 -0.153 REMARK 500 REMARK 500 THIS ENTRY HAS 91 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 102 C - N - CA ANGL. DEV. = -17.8 DEGREES REMARK 500 GLU A 161 C - N - CA ANGL. DEV. = 19.2 DEGREES REMARK 500 GLU A 161 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 GLU A 161 OE1 - CD - OE2 ANGL. DEV. = -7.6 DEGREES REMARK 500 GLU A 161 O - C - N ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG A 164 CB - CG - CD ANGL. DEV. = 18.2 DEGREES REMARK 500 ARG A 164 CG - CD - NE ANGL. DEV. = 16.0 DEGREES REMARK 500 ARG A 164 NH1 - CZ - NH2 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG A 164 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 164 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 GLU A 166 N - CA - CB ANGL. DEV. = 14.5 DEGREES REMARK 500 LYS A 172 CB - CA - C ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 175 CG - CD - NE ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 227 C - N - CA ANGL. DEV. = 16.3 DEGREES REMARK 500 ARG A 227 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG A 227 CB - CG - CD ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG A 227 CG - CD - NE ANGL. DEV. = 14.4 DEGREES REMARK 500 ARG A 227 NE - CZ - NH1 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG A 227 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 7 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ILE B 11 CG1 - CB - CG2 ANGL. DEV. = -13.4 DEGREES REMARK 500 LEU B 13 CB - CG - CD1 ANGL. DEV. = 17.2 DEGREES REMARK 500 LYS B 30 CD - CE - NZ ANGL. DEV. = 18.8 DEGREES REMARK 500 LYS B 40 CD - CE - NZ ANGL. DEV. = 14.4 DEGREES REMARK 500 LEU B 66 CB - CG - CD2 ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP B 85 OD1 - CG - OD2 ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP B 85 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 SER B 169 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 LYS B 172 CD - CE - NZ ANGL. DEV. = -16.1 DEGREES REMARK 500 LEU B 174 CB - CA - C ANGL. DEV. = 11.7 DEGREES REMARK 500 LEU B 174 CA - CB - CG ANGL. DEV. = 21.1 DEGREES REMARK 500 ASN B 176 CB - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 GLU B 204 OE1 - CD - OE2 ANGL. DEV. = -8.8 DEGREES REMARK 500 LEU B 206 CA - CB - CG ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU B 206 CB - CG - CD2 ANGL. DEV. = 13.4 DEGREES REMARK 500 PHE B 208 O - C - N ANGL. DEV. = -10.1 DEGREES REMARK 500 LEU B 211 CA - CB - CG ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 216 -64.42 -106.71 REMARK 500 ASP B 85 -71.04 -84.14 REMARK 500 TRP B 86 -36.64 -38.18 REMARK 500 GLN B 105 -33.18 -37.31 REMARK 500 LYS B 216 -64.44 -106.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASN A 202 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 140 -12.11 REMARK 500 GLU A 161 10.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HAN RELATED DB: PDB REMARK 900 RELATED ID: 3HAP RELATED DB: PDB REMARK 900 RELATED ID: 3HAQ RELATED DB: PDB REMARK 900 RELATED ID: 3HAR RELATED DB: PDB REMARK 900 RELATED ID: 3HAS RELATED DB: PDB DBREF 3HAO A 1 249 UNP P02945 BACR_HALSA 14 262 DBREF 3HAO B 1 249 UNP P02945 BACR_HALSA 14 262 SEQADV 3HAO ALA A 94 UNP P02945 LEU 107 ENGINEERED MUTATION SEQADV 3HAO ALA B 94 UNP P02945 LEU 107 ENGINEERED MUTATION SEQRES 1 A 249 GLN ALA GLN ILE THR GLY ARG PRO GLU TRP ILE TRP LEU SEQRES 2 A 249 ALA LEU GLY THR ALA LEU MET GLY LEU GLY THR LEU TYR SEQRES 3 A 249 PHE LEU VAL LYS GLY MET GLY VAL SER ASP PRO ASP ALA SEQRES 4 A 249 LYS LYS PHE TYR ALA ILE THR THR LEU VAL PRO ALA ILE SEQRES 5 A 249 ALA PHE THR MET TYR LEU SER MET LEU LEU GLY TYR GLY SEQRES 6 A 249 LEU THR MET VAL PRO PHE GLY GLY GLU GLN ASN PRO ILE SEQRES 7 A 249 TYR TRP ALA ARG TYR ALA ASP TRP LEU PHE THR THR PRO SEQRES 8 A 249 LEU LEU ALA LEU ASP LEU ALA LEU LEU VAL ASP ALA ASP SEQRES 9 A 249 GLN GLY THR ILE LEU ALA LEU VAL GLY ALA ASP GLY ILE SEQRES 10 A 249 MET ILE GLY THR GLY LEU VAL GLY ALA LEU THR LYS VAL SEQRES 11 A 249 TYR SER TYR ARG PHE VAL TRP TRP ALA ILE SER THR ALA SEQRES 12 A 249 ALA MET LEU TYR ILE LEU TYR VAL LEU PHE PHE GLY PHE SEQRES 13 A 249 THR SER LYS ALA GLU SER MET ARG PRO GLU VAL ALA SER SEQRES 14 A 249 THR PHE LYS VAL LEU ARG ASN VAL THR VAL VAL LEU TRP SEQRES 15 A 249 SER ALA TYR PRO VAL VAL TRP LEU ILE GLY SER GLU GLY SEQRES 16 A 249 ALA GLY ILE VAL PRO LEU ASN ILE GLU THR LEU LEU PHE SEQRES 17 A 249 MET VAL LEU ASP VAL SER ALA LYS VAL GLY PHE GLY LEU SEQRES 18 A 249 ILE LEU LEU ARG SER ARG ALA ILE PHE GLY GLU ALA GLU SEQRES 19 A 249 ALA PRO GLU PRO SER ALA GLY ASP GLY ALA ALA ALA THR SEQRES 20 A 249 SER ASP SEQRES 1 B 249 GLN ALA GLN ILE THR GLY ARG PRO GLU TRP ILE TRP LEU SEQRES 2 B 249 ALA LEU GLY THR ALA LEU MET GLY LEU GLY THR LEU TYR SEQRES 3 B 249 PHE LEU VAL LYS GLY MET GLY VAL SER ASP PRO ASP ALA SEQRES 4 B 249 LYS LYS PHE TYR ALA ILE THR THR LEU VAL PRO ALA ILE SEQRES 5 B 249 ALA PHE THR MET TYR LEU SER MET LEU LEU GLY TYR GLY SEQRES 6 B 249 LEU THR MET VAL PRO PHE GLY GLY GLU GLN ASN PRO ILE SEQRES 7 B 249 TYR TRP ALA ARG TYR ALA ASP TRP LEU PHE THR THR PRO SEQRES 8 B 249 LEU LEU ALA LEU ASP LEU ALA LEU LEU VAL ASP ALA ASP SEQRES 9 B 249 GLN GLY THR ILE LEU ALA LEU VAL GLY ALA ASP GLY ILE SEQRES 10 B 249 MET ILE GLY THR GLY LEU VAL GLY ALA LEU THR LYS VAL SEQRES 11 B 249 TYR SER TYR ARG PHE VAL TRP TRP ALA ILE SER THR ALA SEQRES 12 B 249 ALA MET LEU TYR ILE LEU TYR VAL LEU PHE PHE GLY PHE SEQRES 13 B 249 THR SER LYS ALA GLU SER MET ARG PRO GLU VAL ALA SER SEQRES 14 B 249 THR PHE LYS VAL LEU ARG ASN VAL THR VAL VAL LEU TRP SEQRES 15 B 249 SER ALA TYR PRO VAL VAL TRP LEU ILE GLY SER GLU GLY SEQRES 16 B 249 ALA GLY ILE VAL PRO LEU ASN ILE GLU THR LEU LEU PHE SEQRES 17 B 249 MET VAL LEU ASP VAL SER ALA LYS VAL GLY PHE GLY LEU SEQRES 18 B 249 ILE LEU LEU ARG SER ARG ALA ILE PHE GLY GLU ALA GLU SEQRES 19 B 249 ALA PRO GLU PRO SER ALA GLY ASP GLY ALA ALA ALA THR SEQRES 20 B 249 SER ASP HET RET A 301 20 HET RET B 301 20 HETNAM RET RETINAL FORMUL 3 RET 2(C20 H28 O) FORMUL 5 HOH *66(H2 O) HELIX 1 1 GLU A 9 MET A 32 1 24 HELIX 2 2 ASP A 36 LEU A 62 1 27 HELIX 3 3 TRP A 80 VAL A 101 1 22 HELIX 4 4 ASP A 104 LEU A 127 1 24 HELIX 5 5 VAL A 130 ALA A 160 1 31 HELIX 6 6 GLU A 161 MET A 163 5 3 HELIX 7 7 ARG A 164 SER A 183 1 20 HELIX 8 8 SER A 183 GLY A 192 1 10 HELIX 9 9 PRO A 200 ARG A 225 1 26 HELIX 10 10 SER A 226 PHE A 230 5 5 HELIX 11 11 GLU B 9 MET B 32 1 24 HELIX 12 12 ASP B 36 LEU B 62 1 27 HELIX 13 13 TRP B 80 VAL B 101 1 22 HELIX 14 14 GLN B 105 LEU B 127 1 23 HELIX 15 15 VAL B 130 GLU B 161 1 32 HELIX 16 16 ARG B 164 ARG B 175 1 12 HELIX 17 17 ASN B 176 SER B 183 1 8 HELIX 18 18 SER B 183 GLY B 192 1 10 HELIX 19 19 PRO B 200 ARG B 225 1 26 HELIX 20 20 SER B 226 PHE B 230 5 5 SHEET 1 A 2 LEU A 66 PHE A 71 0 SHEET 2 A 2 GLU A 74 TYR A 79 -1 O ASN A 76 N VAL A 69 SHEET 1 B 2 MET B 68 PHE B 71 0 SHEET 2 B 2 GLU B 74 PRO B 77 -1 O ASN B 76 N VAL B 69 LINK NZ LYS A 216 C15 RET A 301 1555 1555 1.31 LINK NZ LYS B 216 C15 RET B 301 1555 1555 1.31 SITE 1 AC1 14 TRP A 86 THR A 90 LEU A 93 TRP A 138 SITE 2 AC1 14 SER A 141 THR A 142 MET A 145 TRP A 182 SITE 3 AC1 14 TYR A 185 PRO A 186 TRP A 189 ASP A 212 SITE 4 AC1 14 ALA A 215 LYS A 216 SITE 1 AC2 14 TRP B 86 THR B 90 LEU B 93 TRP B 138 SITE 2 AC2 14 SER B 141 THR B 142 MET B 145 TRP B 182 SITE 3 AC2 14 TYR B 185 PRO B 186 TRP B 189 ASP B 212 SITE 4 AC2 14 ALA B 215 LYS B 216 CRYST1 45.556 108.714 56.193 90.00 114.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021951 0.000000 0.009787 0.00000 SCALE2 0.000000 0.009198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019484 0.00000