PDB Short entry for 3HMI HEADER TRANSFERASE 29-MAY-09 3HMI TITLE THE CRYSTAL STRUCTURE OF HUMAN ABL2 IN COMPLEX WITH 5-AMINO-3-{[4- TITLE 2 (AMINOSULFONYL)PHENYL]AMINO}-N-(2,6-DIFLUOROPHENYL)-1H-1,2,4- TITLE 3 TRIAZOLE-1-CARBOTHIOAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE; COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 2, ABELSON- COMPND 6 RELATED GENE PROTEIN, TYROSINE KINASE ARG; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL2; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HIGH 5 INSECT CELLS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFB-LIC-BSE KEYWDS TYROSINE KINASE, ABL, ABL2, ABELSON MURINE LEUKEMIA VIRAL ONCOGENE, KEYWDS 2 ATP-BINDING, CELL ADHESION, CYTOSKELETON, KINASE, LIPOPROTEIN, KEYWDS 3 MAGNESIUM, MANGANESE, METAL-BINDING, MYRISTATE, NUCLEOTIDE-BINDING, KEYWDS 4 PHOSPHOPROTEIN, SH2 DOMAIN, SH3 DOMAIN, TRANSFERASE, TYROSINE- KEYWDS 5 PROTEIN KINASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 6 SGC EXPDTA X-RAY DIFFRACTION AUTHOR E.UGOCHUKWU,E.SALAH,A.BARR,P.MAHAJAN,B.SHRESTHA,P.SAVITSKY, AUTHOR 2 A.CHAIKUAD,C.ALLERSTON,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 3 J.WEIGELT,A.EDWARDS,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 01-NOV-17 3HMI 1 REMARK REVDAT 2 13-JUL-11 3HMI 1 VERSN REVDAT 1 07-JUL-09 3HMI 0 JRNL AUTH E.UGOCHUKWU,E.SALAH,A.BARR,P.MAHAJAN,B.SHRESTHA,P.SAVITSKY, JRNL AUTH 2 A.CHAIKUAD,C.ALLERSTON,F.VON DELFT,S.KNAPP JRNL TITL THE CRYSTAL STRUCTURE OF HUMAN ABL2 IN COMPLEX WITH JRNL TITL 2 5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2, JRNL TITL 3 6-DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 3 NUMBER OF REFLECTIONS : 27347 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1462 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2216 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2126 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : -1.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.40000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.828 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2260 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1495 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3089 ; 1.465 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3648 ; 0.889 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.222 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;37.560 ;24.063 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 374 ;12.655 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;17.297 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 336 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2514 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 461 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1361 ; 0.810 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 546 ; 0.237 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2202 ; 1.353 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 899 ; 1.877 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 879 ; 2.852 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 294 REMARK 3 ORIGIN FOR THE GROUP (A): -41.2659 6.8628 -3.7654 REMARK 3 T TENSOR REMARK 3 T11: 0.1134 T22: 0.1806 REMARK 3 T33: 0.1409 T12: -0.0223 REMARK 3 T13: 0.0101 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.4018 L22: 1.9523 REMARK 3 L33: 3.2343 L12: -0.2087 REMARK 3 L13: -0.8860 L23: 0.3092 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: 0.0183 S13: -0.1289 REMARK 3 S21: 0.0704 S22: -0.0720 S23: 0.1349 REMARK 3 S31: 0.2139 S32: -0.5782 S33: 0.1423 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 295 A 319 REMARK 3 ORIGIN FOR THE GROUP (A): -38.1567 5.9182 -9.6184 REMARK 3 T TENSOR REMARK 3 T11: 0.0786 T22: 0.0393 REMARK 3 T33: 0.0720 T12: -0.0423 REMARK 3 T13: 0.0043 T23: -0.0268 REMARK 3 L TENSOR REMARK 3 L11: 4.5322 L22: 4.1056 REMARK 3 L33: 3.8801 L12: -1.3105 REMARK 3 L13: -1.4442 L23: 0.9616 REMARK 3 S TENSOR REMARK 3 S11: -0.0689 S12: 0.1917 S13: -0.2812 REMARK 3 S21: 0.1112 S22: -0.2136 S23: 0.1282 REMARK 3 S31: 0.1782 S32: -0.2485 S33: 0.2825 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 326 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): -26.3099 14.2316 -10.0469 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0498 REMARK 3 T33: 0.0574 T12: -0.0140 REMARK 3 T13: -0.0189 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.3338 L22: 0.5448 REMARK 3 L33: 2.5086 L12: 0.2853 REMARK 3 L13: -0.8883 L23: -0.0266 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0039 S13: 0.0009 REMARK 3 S21: -0.0277 S22: 0.0034 S23: 0.0281 REMARK 3 S31: -0.1326 S32: 0.1225 S33: -0.0017 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 433 A 490 REMARK 3 ORIGIN FOR THE GROUP (A): -10.2902 8.3094 -13.8369 REMARK 3 T TENSOR REMARK 3 T11: 0.0399 T22: 0.2169 REMARK 3 T33: 0.0664 T12: -0.0296 REMARK 3 T13: 0.0096 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.6207 L22: 2.0046 REMARK 3 L33: 3.4381 L12: -0.5744 REMARK 3 L13: 0.0354 L23: 0.6998 REMARK 3 S TENSOR REMARK 3 S11: -0.0202 S12: -0.2045 S13: -0.1346 REMARK 3 S21: 0.0623 S22: 0.0389 S23: -0.0517 REMARK 3 S31: 0.2484 S32: 0.3457 S33: -0.0186 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 491 A 517 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4878 11.2027 -19.1910 REMARK 3 T TENSOR REMARK 3 T11: 0.0288 T22: 0.3698 REMARK 3 T33: 0.0392 T12: -0.0612 REMARK 3 T13: 0.0076 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 3.5303 L22: 4.9375 REMARK 3 L33: 3.6524 L12: -1.6862 REMARK 3 L13: 0.4927 L23: 0.2675 REMARK 3 S TENSOR REMARK 3 S11: 0.0986 S12: 0.0663 S13: 0.0079 REMARK 3 S21: -0.2297 S22: -0.1197 S23: 0.1396 REMARK 3 S31: -0.1452 S32: 0.4889 S33: 0.0211 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 518 A 544 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8097 21.3946 -11.6138 REMARK 3 T TENSOR REMARK 3 T11: 0.0862 T22: 0.3021 REMARK 3 T33: 0.0810 T12: -0.1016 REMARK 3 T13: 0.0070 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.1655 L22: 3.1901 REMARK 3 L33: 2.3575 L12: -0.5369 REMARK 3 L13: 0.6022 L23: -0.2178 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: -0.1685 S13: 0.3618 REMARK 3 S21: -0.0874 S22: 0.0849 S23: -0.1494 REMARK 3 S31: -0.2771 S32: 0.3794 S33: -0.0175 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HMI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97630 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28844 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 39.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.80200 REMARK 200 R SYM FOR SHELL (I) : 0.80200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3GVU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LITHIUM SULFATE, 0.05M DI-SODIUM REMARK 280 HYDROGEN PHOSPHATE, 0.05M CITRIC ACID, 19%(W/V) PEG 1000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.96000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.96000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 255 REMARK 465 GLY A 256 REMARK 465 HIS A 257 REMARK 465 HIS A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 SER A 263 REMARK 465 SER A 264 REMARK 465 GLY A 265 REMARK 465 VAL A 266 REMARK 465 ASP A 267 REMARK 465 LEU A 268 REMARK 465 GLY A 269 REMARK 465 THR A 270 REMARK 465 GLU A 271 REMARK 465 ASN A 272 REMARK 465 LEU A 273 REMARK 465 TYR A 274 REMARK 465 PHE A 275 REMARK 465 GLN A 276 REMARK 465 SER A 277 REMARK 465 MET A 278 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 309 CE NZ REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 THR A 323 OG1 CG2 REMARK 470 MET A 324 CG SD CE REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 GLU A 327 CG CD OE1 OE2 REMARK 470 LYS A 331 CE NZ REMARK 470 LYS A 402 CE NZ REMARK 470 ILE A 406 CD1 REMARK 470 HIS A 442 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 493 CG CD OE1 NE2 REMARK 470 GLU A 508 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 291 -136.08 -112.78 REMARK 500 LYS A 320 -149.82 -116.45 REMARK 500 GLU A 325 66.47 -114.57 REMARK 500 ARG A 408 -2.59 76.23 REMARK 500 ASP A 409 51.16 -150.47 REMARK 500 LEU A 433 107.54 -175.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DKI A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GVU RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF HUMAN ABL2 IN COMPLEX WITH GLEEVEC DBREF 3HMI A 279 546 UNP P42684 ABL2_HUMAN 279 546 SEQADV 3HMI MET A 255 UNP P42684 EXPRESSION TAG SEQADV 3HMI GLY A 256 UNP P42684 EXPRESSION TAG SEQADV 3HMI HIS A 257 UNP P42684 EXPRESSION TAG SEQADV 3HMI HIS A 258 UNP P42684 EXPRESSION TAG SEQADV 3HMI HIS A 259 UNP P42684 EXPRESSION TAG SEQADV 3HMI HIS A 260 UNP P42684 EXPRESSION TAG SEQADV 3HMI HIS A 261 UNP P42684 EXPRESSION TAG SEQADV 3HMI HIS A 262 UNP P42684 EXPRESSION TAG SEQADV 3HMI SER A 263 UNP P42684 EXPRESSION TAG SEQADV 3HMI SER A 264 UNP P42684 EXPRESSION TAG SEQADV 3HMI GLY A 265 UNP P42684 EXPRESSION TAG SEQADV 3HMI VAL A 266 UNP P42684 EXPRESSION TAG SEQADV 3HMI ASP A 267 UNP P42684 EXPRESSION TAG SEQADV 3HMI LEU A 268 UNP P42684 EXPRESSION TAG SEQADV 3HMI GLY A 269 UNP P42684 EXPRESSION TAG SEQADV 3HMI THR A 270 UNP P42684 EXPRESSION TAG SEQADV 3HMI GLU A 271 UNP P42684 EXPRESSION TAG SEQADV 3HMI ASN A 272 UNP P42684 EXPRESSION TAG SEQADV 3HMI LEU A 273 UNP P42684 EXPRESSION TAG SEQADV 3HMI TYR A 274 UNP P42684 EXPRESSION TAG SEQADV 3HMI PHE A 275 UNP P42684 EXPRESSION TAG SEQADV 3HMI GLN A 276 UNP P42684 EXPRESSION TAG SEQADV 3HMI SER A 277 UNP P42684 EXPRESSION TAG SEQADV 3HMI MET A 278 UNP P42684 EXPRESSION TAG SEQRES 1 A 292 MET GLY HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP SEQRES 2 A 292 LEU GLY THR GLU ASN LEU TYR PHE GLN SER MET ASP LYS SEQRES 3 A 292 TRP GLU MET GLU ARG THR ASP ILE THR MET LYS HIS LYS SEQRES 4 A 292 LEU GLY GLY GLY GLN TYR GLY GLU VAL TYR VAL GLY VAL SEQRES 5 A 292 TRP LYS LYS TYR SER LEU THR VAL ALA VAL LYS THR LEU SEQRES 6 A 292 LYS GLU ASP THR MET GLU VAL GLU GLU PHE LEU LYS GLU SEQRES 7 A 292 ALA ALA VAL MET LYS GLU ILE LYS HIS PRO ASN LEU VAL SEQRES 8 A 292 GLN LEU LEU GLY VAL CYS THR LEU GLU PRO PRO PHE TYR SEQRES 9 A 292 ILE VAL THR GLU TYR MET PRO TYR GLY ASN LEU LEU ASP SEQRES 10 A 292 TYR LEU ARG GLU CYS ASN ARG GLU GLU VAL THR ALA VAL SEQRES 11 A 292 VAL LEU LEU TYR MET ALA THR GLN ILE SER SER ALA MET SEQRES 12 A 292 GLU TYR LEU GLU LYS LYS ASN PHE ILE HIS ARG ASP LEU SEQRES 13 A 292 ALA ALA ARG ASN CYS LEU VAL GLY GLU ASN HIS VAL VAL SEQRES 14 A 292 LYS VAL ALA ASP PHE GLY LEU SER ARG LEU MET THR GLY SEQRES 15 A 292 ASP THR TYR THR ALA HIS ALA GLY ALA LYS PHE PRO ILE SEQRES 16 A 292 LYS TRP THR ALA PRO GLU SER LEU ALA TYR ASN THR PHE SEQRES 17 A 292 SER ILE LYS SER ASP VAL TRP ALA PHE GLY VAL LEU LEU SEQRES 18 A 292 TRP GLU ILE ALA THR TYR GLY MET SER PRO TYR PRO GLY SEQRES 19 A 292 ILE ASP LEU SER GLN VAL TYR ASP LEU LEU GLU LYS GLY SEQRES 20 A 292 TYR ARG MET GLU GLN PRO GLU GLY CYS PRO PRO LYS VAL SEQRES 21 A 292 TYR GLU LEU MET ARG ALA CYS TRP LYS TRP SER PRO ALA SEQRES 22 A 292 ASP ARG PRO SER PHE ALA GLU THR HIS GLN ALA PHE GLU SEQRES 23 A 292 THR MET PHE HIS ASP SER HET DKI A 1 28 HETNAM DKI 5-AMINO-3-{[4-(AMINOSULFONYL)PHENYL]AMINO}-N-(2,6- HETNAM 2 DKI DIFLUOROPHENYL)-1H-1,2,4-TRIAZOLE-1-CARBOTHIOAMIDE HETSYN DKI CDK 1/2 INHIBITOR FORMUL 2 DKI C15 H13 F2 N7 O2 S2 FORMUL 3 HOH *235(H2 O) HELIX 1 1 GLU A 284 THR A 286 5 3 HELIX 2 2 GLY A 295 GLN A 298 5 4 HELIX 3 3 LYS A 309 SER A 311 5 3 HELIX 4 4 GLU A 325 GLU A 338 1 14 HELIX 5 5 ASN A 368 CYS A 376 1 9 HELIX 6 6 THR A 382 LYS A 403 1 22 HELIX 7 7 ALA A 411 ARG A 413 5 3 HELIX 8 8 GLU A 419 HIS A 421 5 3 HELIX 9 9 PRO A 448 THR A 452 5 5 HELIX 10 10 ALA A 453 ASN A 460 1 8 HELIX 11 11 SER A 463 THR A 480 1 18 HELIX 12 12 ASP A 490 SER A 492 5 3 HELIX 13 13 GLN A 493 LYS A 500 1 8 HELIX 14 14 PRO A 511 TRP A 522 1 12 HELIX 15 15 SER A 525 ARG A 529 5 5 HELIX 16 16 SER A 531 SER A 546 1 16 SHEET 1 A 5 ILE A 288 LYS A 293 0 SHEET 2 A 5 VAL A 302 TRP A 307 -1 O VAL A 304 N HIS A 292 SHEET 3 A 5 LEU A 312 THR A 318 -1 O LEU A 312 N TRP A 307 SHEET 4 A 5 TYR A 358 GLU A 362 -1 O ILE A 359 N LYS A 317 SHEET 5 A 5 LEU A 347 CYS A 351 -1 N GLY A 349 O VAL A 360 SHEET 1 B 2 PHE A 405 ILE A 406 0 SHEET 2 B 2 SER A 431 ARG A 432 -1 O SER A 431 N ILE A 406 SHEET 1 C 2 CYS A 415 VAL A 417 0 SHEET 2 C 2 VAL A 423 VAL A 425 -1 O LYS A 424 N LEU A 416 SHEET 1 D 2 TYR A 439 THR A 440 0 SHEET 2 D 2 THR A 461 PHE A 462 -1 O PHE A 462 N TYR A 439 CISPEP 1 PRO A 355 PRO A 356 0 -12.44 SITE 1 AC1 16 HOH A 54 HOH A 207 LEU A 294 GLY A 295 SITE 2 AC1 16 GLN A 298 TYR A 299 VAL A 302 GLU A 362 SITE 3 AC1 16 TYR A 363 MET A 364 GLY A 367 ARG A 413 SITE 4 AC1 16 ASN A 414 LEU A 416 ALA A 426 PHE A 428 CRYST1 165.920 39.800 43.130 90.00 95.69 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006027 0.000000 0.000601 0.00000 SCALE2 0.000000 0.025126 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023301 0.00000