PDB Short entry for 3HQU HEADER OXIDOREDUCTASE/TRANSCRIPTION 08-JUN-09 3HQU TITLE PHD2:FE:UN9:PARTIAL HIF1-ALPHA SUBSTRATE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: EGL NINE HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PHD2 CATALYTIC DOMAIN, RESIDUES 181-426; COMPND 5 SYNONYM: PROLYL HYDROXYLASE, HYPOXIA-INDUCIBLE FACTOR PROLYL COMPND 6 HYDROXYLASE 2, HIF-PROLYL HYDROXYLASE 2, HIF-PH2, HPH-2, PROLYL COMPND 7 HYDROXYLASE DOMAIN-CONTAINING PROTEIN 2, PHD2, SM-20; COMPND 8 EC: 1.14.11.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1 ALPHA; COMPND 12 CHAIN: S; COMPND 13 FRAGMENT: C-TERMINAL DEGRADATION DOMAIN, RESIDUES 558-574; COMPND 14 SYNONYM: HIF-1 ALPHA, HIF1 ALPHA, ARNT-INTERACTING PROTEIN, MEMBER OF COMPND 15 PAS PROTEIN 1, BASIC-HELIX-LOOP-HELIX-PAS PROTEIN MOP1; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHD2(AMINO ACIDS 181-426); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+); SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 OTHER_DETAILS: PEPTIDE SYNTHESIS (HYP564) KEYWDS DOUBLE STRANDED BETA-HELIX, ALTERNATIVE SPLICING, CONGENITAL KEYWDS 2 ERYTHROCYTOSIS, DIOXYGENASE, DISEASE MUTATION, IRON, METAL-BINDING, KEYWDS 3 OXIDOREDUCTASE, VITAMIN C, ZINC, ZINC-FINGER, ACTIVATOR, CYTOPLASM, KEYWDS 4 DNA-BINDING, HYDROXYLATION, ISOPEPTIDE BOND, NUCLEUS, KEYWDS 5 PHOSPHOPROTEIN, POLYMORPHISM, S-NITROSYLATION, TRANSCRIPTION, KEYWDS 6 TRANSCRIPTION REGULATION, UBL CONJUGATION, OXIDOREDUCTASE- KEYWDS 7 TRANSCRIPTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.CHOWDHURY,M.A.MCDONOUGH,C.J.SCHOFIELD REVDAT 3 01-NOV-23 3HQU 1 REMARK REVDAT 2 01-NOV-17 3HQU 1 REMARK REVDAT 1 28-JUL-09 3HQU 0 JRNL AUTH R.CHOWDHURY,M.A.MCDONOUGH,J.MECINOVIC,C.LOENARZ,E.FLASHMAN, JRNL AUTH 2 K.S.HEWITSON,C.DOMENE,C.J.SCHOFIELD JRNL TITL STRUCTURAL BASIS FOR BINDING OF HYPOXIA-INDUCIBLE FACTOR TO JRNL TITL 2 THE OXYGEN-SENSING PROLYL HYDROXYLASES JRNL REF STRUCTURE V. 17 981 2009 JRNL REFN ISSN 0969-2126 JRNL PMID 19604478 JRNL DOI 10.1016/J.STR.2009.06.002 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.A.MCDONOUGH,V.LI,E.FLASHMAN,R.CHOWDHURY,C.MOHR, REMARK 1 AUTH 2 B.M.R.LIENARD,J.ZONDLO,N.J.OLDHAM,I.J.CLIFTON,J.LEWIS, REMARK 1 AUTH 3 L.A.MCNEILL,R.J.M.KURZEJA,K.S.HEWITSON,E.YANG,S.JORDAN, REMARK 1 AUTH 4 R.S.SYED,C.J.SCHOFIELD REMARK 1 TITL CELLULAR OXYGEN SENSING: CRYSTAL STRUCTURE OF REMARK 1 TITL 2 HYPOXIA-INDUCIBLE FACTOR PROLYL HYDROXYLASE (PHD2) REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 103 9814 2006 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 16782814 REMARK 1 DOI 10.1073/PNAS.0601283103 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 195390.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 12030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1259 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1665 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 183 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1751 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 135 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.48000 REMARK 3 B12 (A**2) : 1.66000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.24 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 58.52 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : FG2216.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : FG2216.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.29 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : RH COATED COLLIMATING MIRROR, A REMARK 200 DOUBLE CRYSTAL SI(III) REMARK 200 MONOCHROMATOR WITH HORIZONTAL REMARK 200 SAGGITAL FOCUSING SYSTEM, AND REMARK 200 FINALLY A SECOND RH COATED REMARK 200 MIRROR FOR VERTICAL FOCUSING. REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12581 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.6580 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2G19 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE, 4% DIOXANE, REMARK 280 0.1M MES PH6.5, ARGON ATMOSPHERE, 20MG/ML PROTEIN WITH 1MM FE(II) REMARK 280 SO4, 10MM HIF1A-CODD-OH PEPTIDE, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 19.80750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 19.80750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 19.80750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, S REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 181 REMARK 465 ASN A 182 REMARK 465 GLY A 183 REMARK 465 GLN A 184 REMARK 465 THR A 185 REMARK 465 LYS A 186 REMARK 465 PRO A 187 REMARK 465 TYR A 403 REMARK 465 LEU A 404 REMARK 465 THR A 405 REMARK 465 GLY A 406 REMARK 465 GLU A 407 REMARK 465 LYS A 408 REMARK 465 GLY A 409 REMARK 465 VAL A 410 REMARK 465 ARG A 411 REMARK 465 VAL A 412 REMARK 465 GLU A 413 REMARK 465 LEU A 414 REMARK 465 ASN A 415 REMARK 465 LYS A 416 REMARK 465 PRO A 417 REMARK 465 SER A 418 REMARK 465 ASP A 419 REMARK 465 SER A 420 REMARK 465 VAL A 421 REMARK 465 GLY A 422 REMARK 465 LYS A 423 REMARK 465 ASP A 424 REMARK 465 VAL A 425 REMARK 465 PHE A 426 REMARK 465 ASP S 558 REMARK 465 LEU S 559 REMARK 465 GLU S 560 REMARK 465 MET S 561 REMARK 465 LEU S 562 REMARK 465 ALA S 563 REMARK 465 PRO S 564 REMARK 465 TYR S 565 REMARK 465 ILE S 566 REMARK 465 PRO S 567 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 245 OG REMARK 470 SER A 248 OG REMARK 470 LYS A 249 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 197 -66.51 -127.80 REMARK 500 GLN A 243 37.96 -97.43 REMARK 500 SER A 245 -66.25 -1.41 REMARK 500 SER A 247 13.19 -59.69 REMARK 500 ASP A 333 48.99 39.00 REMARK 500 GLN S 573 12.03 -69.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 450 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 313 NE2 REMARK 620 2 ASP A 315 OD2 87.6 REMARK 620 3 HIS A 374 NE2 89.1 89.0 REMARK 620 4 UN9 A 500 N8 85.2 110.6 159.3 REMARK 620 5 UN9 A 500 O13 101.1 167.4 82.0 79.6 REMARK 620 6 HOH A1012 O 172.7 87.3 96.0 91.8 84.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 450 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UN9 A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HQR RELATED DB: PDB REMARK 900 PHD2:MN:NOG:HIF1-ALPHA SUBSTRATE COMPLEX REMARK 900 RELATED ID: 2G1M RELATED DB: PDB REMARK 900 PHD2:INHIBITOR COMPLEX DBREF 3HQU A 181 426 UNP Q9GZT9 EGLN1_HUMAN 181 426 DBREF 3HQU S 558 574 UNP Q16665 HIF1A_HUMAN 558 574 SEQRES 1 A 246 PRO ASN GLY GLN THR LYS PRO LEU PRO ALA LEU LYS LEU SEQRES 2 A 246 ALA LEU GLU TYR ILE VAL PRO CYS MET ASN LYS HIS GLY SEQRES 3 A 246 ILE CYS VAL VAL ASP ASP PHE LEU GLY LYS GLU THR GLY SEQRES 4 A 246 GLN GLN ILE GLY ASP GLU VAL ARG ALA LEU HIS ASP THR SEQRES 5 A 246 GLY LYS PHE THR ASP GLY GLN LEU VAL SER GLN LYS SER SEQRES 6 A 246 ASP SER SER LYS ASP ILE ARG GLY ASP LYS ILE THR TRP SEQRES 7 A 246 ILE GLU GLY LYS GLU PRO GLY CYS GLU THR ILE GLY LEU SEQRES 8 A 246 LEU MET SER SER MET ASP ASP LEU ILE ARG HIS CYS ASN SEQRES 9 A 246 GLY LYS LEU GLY SER TYR LYS ILE ASN GLY ARG THR LYS SEQRES 10 A 246 ALA MET VAL ALA CYS TYR PRO GLY ASN GLY THR GLY TYR SEQRES 11 A 246 VAL ARG HIS VAL ASP ASN PRO ASN GLY ASP GLY ARG CYS SEQRES 12 A 246 VAL THR CYS ILE TYR TYR LEU ASN LYS ASP TRP ASP ALA SEQRES 13 A 246 LYS VAL SER GLY GLY ILE LEU ARG ILE PHE PRO GLU GLY SEQRES 14 A 246 LYS ALA GLN PHE ALA ASP ILE GLU PRO LYS PHE ASP ARG SEQRES 15 A 246 LEU LEU PHE PHE TRP SER ASP ARG ARG ASN PRO HIS GLU SEQRES 16 A 246 VAL GLN PRO ALA TYR ALA THR ARG TYR ALA ILE THR VAL SEQRES 17 A 246 TRP TYR PHE ASP ALA ASP GLU ARG ALA ARG ALA LYS VAL SEQRES 18 A 246 LYS TYR LEU THR GLY GLU LYS GLY VAL ARG VAL GLU LEU SEQRES 19 A 246 ASN LYS PRO SER ASP SER VAL GLY LYS ASP VAL PHE SEQRES 1 S 17 ASP LEU GLU MET LEU ALA PRO TYR ILE PRO MET ASP ASP SEQRES 2 S 17 ASP PHE GLN LEU HET FE2 A 450 1 HET UN9 A 500 19 HETNAM FE2 FE (II) ION HETNAM UN9 N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE FORMUL 3 FE2 FE 2+ FORMUL 4 UN9 C12 H9 CL N2 O4 FORMUL 5 HOH *135(H2 O) HELIX 1 1 PRO A 189 TYR A 197 1 9 HELIX 2 2 TYR A 197 GLY A 206 1 10 HELIX 3 3 GLY A 215 THR A 232 1 18 HELIX 4 4 ASP A 246 ASP A 250 5 5 HELIX 5 5 CYS A 266 CYS A 283 1 18 HELIX 6 6 ASP A 335 GLY A 340 1 6 HELIX 7 7 ALA A 393 ALA A 399 1 7 SHEET 1 A 6 ILE A 207 VAL A 210 0 SHEET 2 A 6 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 A 6 ARG A 322 TYR A 329 -1 N ILE A 327 O LEU A 364 SHEET 4 A 6 ARG A 383 ASP A 392 -1 O TYR A 390 N VAL A 324 SHEET 5 A 6 ALA A 298 TYR A 303 -1 N MET A 299 O THR A 387 SHEET 6 A 6 LYS A 255 ILE A 259 -1 N ILE A 259 O ALA A 298 SHEET 1 B 5 ILE A 207 VAL A 210 0 SHEET 2 B 5 ARG A 362 TRP A 367 -1 O LEU A 363 N VAL A 210 SHEET 3 B 5 ARG A 322 TYR A 329 -1 N ILE A 327 O LEU A 364 SHEET 4 B 5 ARG A 383 ASP A 392 -1 O TYR A 390 N VAL A 324 SHEET 5 B 5 ILE A 292 ARG A 295 -1 N GLY A 294 O PHE A 391 SHEET 1 C 2 LEU A 240 SER A 242 0 SHEET 2 C 2 ILE A 251 ARG A 252 -1 O ILE A 251 N VAL A 241 SHEET 1 D 4 THR A 308 HIS A 313 0 SHEET 2 D 4 HIS A 374 ALA A 379 -1 O HIS A 374 N HIS A 313 SHEET 3 D 4 LEU A 343 ILE A 345 -1 N ARG A 344 O GLU A 375 SHEET 4 D 4 ALA A 354 ILE A 356 -1 O ALA A 354 N ILE A 345 LINK NE2 HIS A 313 FE FE2 A 450 1555 1555 2.20 LINK OD2 ASP A 315 FE FE2 A 450 1555 1555 2.17 LINK NE2 HIS A 374 FE FE2 A 450 1555 1555 2.17 LINK FE FE2 A 450 N8 UN9 A 500 1555 1555 2.18 LINK FE FE2 A 450 O13 UN9 A 500 1555 1555 2.14 LINK FE FE2 A 450 O HOH A1012 1555 1555 2.24 SITE 1 AC1 5 HIS A 313 ASP A 315 HIS A 374 UN9 A 500 SITE 2 AC1 5 HOH A1012 SITE 1 AC2 16 ASP A 254 MET A 299 TYR A 303 TYR A 310 SITE 2 AC2 16 HIS A 313 ASP A 315 TYR A 329 LEU A 343 SITE 3 AC2 16 HIS A 374 VAL A 376 ARG A 383 ARG A 398 SITE 4 AC2 16 VAL A 401 FE2 A 450 HOH A1012 HOH A1063 CRYST1 110.819 110.819 39.615 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009024 0.005210 0.000000 0.00000 SCALE2 0.000000 0.010420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025243 0.00000