PDB Short entry for 3HVJ HEADER TRANSFERASE 16-JUN-09 3HVJ TITLE RAT CATECHOL O-METHYLTRANSFERASE IN COMPLEX WITH A CATECHOL-TYPE, N6- TITLE 2 PROPYLADENINE-CONTAINING BISUBSTRATE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: SOLUBLE FORM, UNP RESIDUES 44-264; COMPND 5 EC: 2.1.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 TISSUE: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PDS56/RBSII KEYWDS METHYLTRANSFERASE, NEUROTRANSMITTER DEGRADATION, ALTERNATIVE KEYWDS 2 INITIATION, CATECHOLAMINE METABOLISM, CELL MEMBRANE, MAGNESIUM, KEYWDS 3 MEMBRANE, METAL-BINDING, PHOSPHOPROTEIN, S-ADENOSYL-L-METHIONINE, KEYWDS 4 SIGNAL-ANCHOR, TRANSFERASE, TRANSMEMBRANE EXPDTA X-RAY DIFFRACTION AUTHOR A.EHLER,D.SCHLATTER,M.STIHLE,J.BENZ,M.G.RUDOLPH REVDAT 4 20-MAR-24 3HVJ 1 REMARK LINK REVDAT 3 01-NOV-17 3HVJ 1 REMARK REVDAT 2 08-AUG-12 3HVJ 1 JRNL VERSN TITLE REVDAT 1 13-OCT-09 3HVJ 0 JRNL AUTH M.ELLERMANN,R.JAKOB-ROETNE,C.LERNER,E.BORRONI,D.SCHLATTER, JRNL AUTH 2 D.ROTH,A.EHLER,M.G.RUDOLPH,F.DIEDERICH JRNL TITL MOLECULAR RECOGNITION AT THE ACTIVE SITE OF JRNL TITL 2 CATECHOL-O-METHYLTRANSFERASE: ENERGETICALLY FAVORABLE JRNL TITL 3 REPLACEMENT OF A WATER MOLECULE IMPORTED BY A BISUBSTRATE JRNL TITL 4 INHIBITOR. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 48 9092 2009 JRNL REFN ISSN 1433-7851 JRNL PMID 19882607 JRNL DOI 10.1002/ANIE.200904410 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0088 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 39165 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2078 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2284 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 406 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.41000 REMARK 3 B22 (A**2) : -1.08000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.108 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3582 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2365 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4871 ; 1.530 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5810 ; 0.959 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 441 ; 5.353 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;38.626 ;24.870 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 626 ;14.221 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.135 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3927 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 662 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2151 ; 0.886 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 869 ; 0.246 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3474 ; 1.540 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1431 ; 2.520 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1389 ; 3.873 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3HVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42379 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 45.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8000, 0.1M BT PH 5.5, 0.1M REMARK 280 AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.67300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.70700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.67300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.70700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 GLY A 45 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 ASP A 262 REMARK 465 LYS A 263 REMARK 465 SER A 264 REMARK 465 MET B 44 REMARK 465 SER B 259 REMARK 465 SER B 260 REMARK 465 PRO B 261 REMARK 465 ASP B 262 REMARK 465 LYS B 263 REMARK 465 SER B 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 286 O HOH B 317 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 19 O HOH B 338 1565 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 79 -114.56 -137.40 REMARK 500 TYR A 111 -114.60 58.61 REMARK 500 ASP A 176 -76.17 -92.73 REMARK 500 ASP A 184 28.47 -157.17 REMARK 500 HIS A 185 -149.63 -100.76 REMARK 500 SER A 239 -141.71 -150.51 REMARK 500 MET B 83 47.89 -77.79 REMARK 500 SER B 101 66.23 26.00 REMARK 500 TYR B 111 -113.86 51.08 REMARK 500 ASP B 176 -75.81 -92.64 REMARK 500 ASP B 184 37.89 -147.84 REMARK 500 HIS B 185 -151.74 -110.24 REMARK 500 SER B 239 -143.11 -154.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 265 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 705 A 1 O34 REMARK 620 2 705 A 1 O32 79.9 REMARK 620 3 ASP A 184 OD1 170.1 90.2 REMARK 620 4 ASP A 212 OD2 100.6 168.3 89.0 REMARK 620 5 ASN A 213 OD1 89.1 87.4 90.5 80.9 REMARK 620 6 HOH A 401 O 88.9 98.8 92.7 92.9 173.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 265 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 705 B 2 O34 REMARK 620 2 705 B 2 O32 76.2 REMARK 620 3 ASP B 184 OD1 165.8 89.7 REMARK 620 4 ASP B 212 OD2 100.7 167.4 93.4 REMARK 620 5 ASN B 213 OD1 90.2 86.0 90.5 81.8 REMARK 620 6 HOH B 433 O 84.3 96.1 95.8 95.8 173.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 705 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 266 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 267 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 705 B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 265 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HVH RELATED DB: PDB REMARK 900 RELATED ID: 3HVI RELATED DB: PDB REMARK 900 RELATED ID: 3HVK RELATED DB: PDB DBREF 3HVJ A 44 264 UNP P22734 COMT_RAT 44 264 DBREF 3HVJ B 44 264 UNP P22734 COMT_RAT 44 264 SEQRES 1 A 221 MET GLY ASP THR LYS GLU GLN ARG ILE LEU ARG TYR VAL SEQRES 2 A 221 GLN GLN ASN ALA LYS PRO GLY ASP PRO GLN SER VAL LEU SEQRES 3 A 221 GLU ALA ILE ASP THR TYR CYS THR GLN LYS GLU TRP ALA SEQRES 4 A 221 MET ASN VAL GLY ASP ALA LYS GLY GLN ILE MET ASP ALA SEQRES 5 A 221 VAL ILE ARG GLU TYR SER PRO SER LEU VAL LEU GLU LEU SEQRES 6 A 221 GLY ALA TYR CYS GLY TYR SER ALA VAL ARG MET ALA ARG SEQRES 7 A 221 LEU LEU GLN PRO GLY ALA ARG LEU LEU THR MET GLU MET SEQRES 8 A 221 ASN PRO ASP TYR ALA ALA ILE THR GLN GLN MET LEU ASN SEQRES 9 A 221 PHE ALA GLY LEU GLN ASP LYS VAL THR ILE LEU ASN GLY SEQRES 10 A 221 ALA SER GLN ASP LEU ILE PRO GLN LEU LYS LYS LYS TYR SEQRES 11 A 221 ASP VAL ASP THR LEU ASP MET VAL PHE LEU ASP HIS TRP SEQRES 12 A 221 LYS ASP ARG TYR LEU PRO ASP THR LEU LEU LEU GLU LYS SEQRES 13 A 221 CYS GLY LEU LEU ARG LYS GLY THR VAL LEU LEU ALA ASP SEQRES 14 A 221 ASN VAL ILE VAL PRO GLY THR PRO ASP PHE LEU ALA TYR SEQRES 15 A 221 VAL ARG GLY SER SER SER PHE GLU CYS THR HIS TYR SER SEQRES 16 A 221 SER TYR LEU GLU TYR MET LYS VAL VAL ASP GLY LEU GLU SEQRES 17 A 221 LYS ALA ILE TYR GLN GLY PRO SER SER PRO ASP LYS SER SEQRES 1 B 221 MET GLY ASP THR LYS GLU GLN ARG ILE LEU ARG TYR VAL SEQRES 2 B 221 GLN GLN ASN ALA LYS PRO GLY ASP PRO GLN SER VAL LEU SEQRES 3 B 221 GLU ALA ILE ASP THR TYR CYS THR GLN LYS GLU TRP ALA SEQRES 4 B 221 MET ASN VAL GLY ASP ALA LYS GLY GLN ILE MET ASP ALA SEQRES 5 B 221 VAL ILE ARG GLU TYR SER PRO SER LEU VAL LEU GLU LEU SEQRES 6 B 221 GLY ALA TYR CYS GLY TYR SER ALA VAL ARG MET ALA ARG SEQRES 7 B 221 LEU LEU GLN PRO GLY ALA ARG LEU LEU THR MET GLU MET SEQRES 8 B 221 ASN PRO ASP TYR ALA ALA ILE THR GLN GLN MET LEU ASN SEQRES 9 B 221 PHE ALA GLY LEU GLN ASP LYS VAL THR ILE LEU ASN GLY SEQRES 10 B 221 ALA SER GLN ASP LEU ILE PRO GLN LEU LYS LYS LYS TYR SEQRES 11 B 221 ASP VAL ASP THR LEU ASP MET VAL PHE LEU ASP HIS TRP SEQRES 12 B 221 LYS ASP ARG TYR LEU PRO ASP THR LEU LEU LEU GLU LYS SEQRES 13 B 221 CYS GLY LEU LEU ARG LYS GLY THR VAL LEU LEU ALA ASP SEQRES 14 B 221 ASN VAL ILE VAL PRO GLY THR PRO ASP PHE LEU ALA TYR SEQRES 15 B 221 VAL ARG GLY SER SER SER PHE GLU CYS THR HIS TYR SER SEQRES 16 B 221 SER TYR LEU GLU TYR MET LYS VAL VAL ASP GLY LEU GLU SEQRES 17 B 221 LYS ALA ILE TYR GLN GLY PRO SER SER PRO ASP LYS SER HET 705 A 1 41 HET MG A 265 1 HET CL A 266 1 HET BTB A 267 14 HET 705 B 2 41 HET MG B 265 1 HETNAM 705 N-[(E)-3-[(2R,3S,4R,5R)-3,4-DIHYDROXY-5-(6- HETNAM 2 705 PROPYLAMINOPURIN-9-YL)OXOLAN-2-YL]PROP-2-ENYL]-5-(4- HETNAM 3 705 FLUOROPHENYL)-2,3-DIHYDROXY-BENZAMIDE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN BTB BIS-TRIS BUFFER FORMUL 3 705 2(C28 H29 F N6 O6) FORMUL 4 MG 2(MG 2+) FORMUL 5 CL CL 1- FORMUL 6 BTB C8 H19 N O5 FORMUL 9 HOH *406(H2 O) HELIX 1 1 THR A 47 ALA A 60 1 14 HELIX 2 2 ASP A 64 LYS A 79 1 16 HELIX 3 3 VAL A 85 SER A 101 1 17 HELIX 4 4 GLY A 113 ARG A 121 1 9 HELIX 5 5 ASN A 135 GLY A 150 1 16 HELIX 6 6 ALA A 161 ILE A 166 1 6 HELIX 7 7 GLN A 168 ASP A 174 1 7 HELIX 8 8 TRP A 186 ASP A 188 5 3 HELIX 9 9 ARG A 189 CYS A 200 1 12 HELIX 10 10 THR A 219 SER A 229 1 11 HELIX 11 11 THR B 47 ALA B 60 1 14 HELIX 12 12 ASP B 64 LYS B 79 1 16 HELIX 13 13 VAL B 85 SER B 101 1 17 HELIX 14 14 GLY B 113 ARG B 121 1 9 HELIX 15 15 ASN B 135 GLY B 150 1 16 HELIX 16 16 ALA B 161 ILE B 166 1 6 HELIX 17 17 GLN B 168 ASP B 174 1 7 HELIX 18 18 TRP B 186 ASP B 188 5 3 HELIX 19 19 ARG B 189 CYS B 200 1 12 HELIX 20 20 THR B 219 SER B 229 1 11 SHEET 1 A 7 VAL A 155 ASN A 159 0 SHEET 2 A 7 ARG A 128 GLU A 133 1 N THR A 131 O LEU A 158 SHEET 3 A 7 LEU A 104 LEU A 108 1 N GLU A 107 O LEU A 130 SHEET 4 A 7 LEU A 178 LEU A 183 1 O PHE A 182 N LEU A 106 SHEET 5 A 7 LEU A 203 ALA A 211 1 O LEU A 210 N VAL A 181 SHEET 6 A 7 VAL A 247 TYR A 255 -1 O TYR A 255 N GLY A 206 SHEET 7 A 7 PHE A 232 TYR A 240 -1 N SER A 239 O ASP A 248 SHEET 1 B 7 VAL B 155 ASN B 159 0 SHEET 2 B 7 ARG B 128 GLU B 133 1 N THR B 131 O LEU B 158 SHEET 3 B 7 LEU B 104 LEU B 108 1 N VAL B 105 O LEU B 130 SHEET 4 B 7 LEU B 178 LEU B 183 1 O PHE B 182 N LEU B 106 SHEET 5 B 7 LEU B 203 ALA B 211 1 O VAL B 208 N VAL B 181 SHEET 6 B 7 VAL B 247 TYR B 255 -1 O TYR B 255 N GLY B 206 SHEET 7 B 7 PHE B 232 TYR B 240 -1 N THR B 235 O LYS B 252 LINK O34 705 A 1 MG MG A 265 1555 1555 2.09 LINK O32 705 A 1 MG MG A 265 1555 1555 2.11 LINK OD1 ASP A 184 MG MG A 265 1555 1555 2.08 LINK OD2 ASP A 212 MG MG A 265 1555 1555 2.17 LINK OD1 ASN A 213 MG MG A 265 1555 1555 2.11 LINK MG MG A 265 O HOH A 401 1555 1555 2.09 LINK O34 705 B 2 MG MG B 265 1555 1555 2.18 LINK O32 705 B 2 MG MG B 265 1555 1555 2.15 LINK OD1 ASP B 184 MG MG B 265 1555 1555 1.99 LINK OD2 ASP B 212 MG MG B 265 1555 1555 2.04 LINK OD1 ASN B 213 MG MG B 265 1555 1555 2.09 LINK MG MG B 265 O HOH B 433 1555 1555 2.10 CISPEP 1 VAL A 216 PRO A 217 0 -0.72 CISPEP 2 VAL B 216 PRO B 217 0 0.06 SITE 1 AC1 27 HOH A 40 MET A 83 GLY A 109 TYR A 111 SITE 2 AC1 27 GLU A 133 MET A 134 TYR A 138 GLY A 160 SITE 3 AC1 27 ALA A 161 SER A 162 GLN A 163 ASP A 184 SITE 4 AC1 27 HIS A 185 TRP A 186 LYS A 187 ARG A 189 SITE 5 AC1 27 ASP A 212 ASN A 213 GLU A 242 MG A 265 SITE 6 AC1 27 HOH A 317 HOH A 324 HOH A 401 705 B 2 SITE 7 AC1 27 TRP B 81 LEU B 241 MET B 244 SITE 1 AC2 5 705 A 1 ASP A 184 ASP A 212 ASN A 213 SITE 2 AC2 5 HOH A 401 SITE 1 AC3 3 ASP A 87 ALA A 88 TYR A 243 SITE 1 AC4 11 CYS A 76 THR A 77 LYS A 79 TRP A 81 SITE 2 AC4 11 HOH A 433 705 B 2 TRP B 186 LYS B 187 SITE 3 AC4 11 ASP B 188 PRO B 217 HOH B 373 SITE 1 AC5 30 705 A 1 TRP A 81 LEU A 241 MET A 244 SITE 2 AC5 30 BTB A 267 HOH A 425 TRP B 81 MET B 83 SITE 3 AC5 30 GLY B 109 TYR B 111 GLU B 133 MET B 134 SITE 4 AC5 30 ASN B 135 TYR B 138 GLY B 160 ALA B 161 SITE 5 AC5 30 SER B 162 GLN B 163 ASP B 184 HIS B 185 SITE 6 AC5 30 TRP B 186 LYS B 187 ARG B 189 ASP B 212 SITE 7 AC5 30 ASN B 213 PRO B 217 GLU B 242 MG B 265 SITE 8 AC5 30 HOH B 345 HOH B 433 SITE 1 AC6 5 705 B 2 ASP B 184 ASP B 212 ASN B 213 SITE 2 AC6 5 HOH B 433 CRYST1 55.346 61.414 132.500 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018068 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007547 0.00000