PDB Short entry for 3HY5 HEADER TRANSPORT PROTEIN 22-JUN-09 3HY5 TITLE CRYSTAL STRUCTURE OF CRALBP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINALDEHYDE-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELLULAR RETINALDEHYDE-BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CRALBP, RLBP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS LIPID TRANSFER PROTEIN, 11-CIS-RETINAL, BOTHNIA DYSTROPHY, KEYWDS 2 ACETYLATION, CYTOPLASM, DISEASE MUTATION, RETINITIS PIGMENTOSA, KEYWDS 3 RETINOL-BINDING, SENSORY TRANSDUCTION, TRANSPORT, VISION, TRANSPORT KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.STOCKER,X.HE,J.LOBSIGER REVDAT 4 06-SEP-23 3HY5 1 REMARK REVDAT 3 01-NOV-17 3HY5 1 REMARK REVDAT 2 24-NOV-09 3HY5 1 JRNL REVDAT 1 20-OCT-09 3HY5 0 JRNL AUTH X.HE,J.LOBSIGER,A.STOCKER JRNL TITL BOTHNIA DYSTROPHY IS CAUSED BY DOMINO-LIKE REARRANGEMENTS IN JRNL TITL 2 CELLULAR RETINALDEHYDE-BINDING PROTEIN MUTANT R234W. JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 18545 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19846785 JRNL DOI 10.1073/PNAS.0907454106 REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 9690 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.242 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1300 - 5.8110 0.97 1357 152 0.2240 0.2760 REMARK 3 2 5.8110 - 4.6130 1.00 1271 141 0.2200 0.2190 REMARK 3 3 4.6130 - 4.0310 1.00 1241 138 0.2080 0.2570 REMARK 3 4 4.0310 - 3.6620 1.00 1227 136 0.2670 0.2720 REMARK 3 5 3.6620 - 3.4000 1.00 1217 135 0.2750 0.3070 REMARK 3 6 3.4000 - 3.1990 1.00 1213 135 0.2890 0.3480 REMARK 3 7 3.1990 - 3.0400 0.99 1194 133 0.3150 0.3710 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 103.5 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 89.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 132.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.68900 REMARK 3 B22 (A**2) : -0.68900 REMARK 3 B33 (A**2) : 0.76500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2398 REMARK 3 ANGLE : 0.741 3235 REMARK 3 CHIRALITY : 0.046 340 REMARK 3 PLANARITY : 0.004 422 REMARK 3 DIHEDRAL : 14.391 916 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 23:41) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2144 37.2942 28.0496 REMARK 3 T TENSOR REMARK 3 T11: 1.3250 T22: 0.8725 REMARK 3 T33: 0.6367 T12: -0.2661 REMARK 3 T13: 0.0699 T23: -0.1890 REMARK 3 L TENSOR REMARK 3 L11: 0.6272 L22: -0.3200 REMARK 3 L33: 4.4548 L12: -0.2508 REMARK 3 L13: -1.1474 L23: -2.0517 REMARK 3 S TENSOR REMARK 3 S11: 0.4417 S12: -0.0360 S13: 0.2584 REMARK 3 S21: 0.1147 S22: -0.1743 S23: -0.1153 REMARK 3 S31: -1.0605 S32: -0.5373 S33: -0.2223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 42:55) REMARK 3 ORIGIN FOR THE GROUP (A): -10.7076 30.2715 37.1684 REMARK 3 T TENSOR REMARK 3 T11: 2.0784 T22: 0.7188 REMARK 3 T33: 0.6167 T12: -0.7618 REMARK 3 T13: 0.3991 T23: -0.2208 REMARK 3 L TENSOR REMARK 3 L11: 0.7107 L22: -1.3470 REMARK 3 L33: 4.8614 L12: -1.1142 REMARK 3 L13: 1.4888 L23: 3.6627 REMARK 3 S TENSOR REMARK 3 S11: 0.3144 S12: -0.1823 S13: 0.4246 REMARK 3 S21: -0.9589 S22: 0.2350 S23: -0.5291 REMARK 3 S31: 2.5063 S32: -0.6133 S33: -0.3790 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 56:85) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5158 11.1499 43.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.8303 T22: 0.6578 REMARK 3 T33: -0.3670 T12: -0.7442 REMARK 3 T13: -0.7017 T23: 0.5179 REMARK 3 L TENSOR REMARK 3 L11: 0.7239 L22: 0.6719 REMARK 3 L33: 1.4505 L12: -0.2388 REMARK 3 L13: 0.6481 L23: -1.4935 REMARK 3 S TENSOR REMARK 3 S11: 0.7815 S12: -1.1565 S13: 0.7593 REMARK 3 S21: 0.9141 S22: -0.3859 S23: 0.4610 REMARK 3 S31: -0.9690 S32: -0.3827 S33: 0.0850 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 86:98) REMARK 3 ORIGIN FOR THE GROUP (A): 7.5211 16.1519 37.6235 REMARK 3 T TENSOR REMARK 3 T11: 1.2389 T22: 1.0703 REMARK 3 T33: 0.7974 T12: -0.4965 REMARK 3 T13: -0.3856 T23: 0.1668 REMARK 3 L TENSOR REMARK 3 L11: 0.1353 L22: 0.2215 REMARK 3 L33: 0.1367 L12: -0.0053 REMARK 3 L13: -0.3930 L23: -0.2453 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: -0.3369 S13: 0.0170 REMARK 3 S21: -0.0906 S22: -0.1315 S23: 0.0532 REMARK 3 S31: -0.1758 S32: 0.3265 S33: -0.0054 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 99:143) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5949 14.3038 26.4058 REMARK 3 T TENSOR REMARK 3 T11: 0.9224 T22: 0.4608 REMARK 3 T33: 0.5278 T12: -0.4526 REMARK 3 T13: -0.1888 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 3.2203 L22: 3.6337 REMARK 3 L33: 3.8053 L12: 1.6869 REMARK 3 L13: -0.3512 L23: 2.8948 REMARK 3 S TENSOR REMARK 3 S11: 1.0858 S12: -0.5884 S13: -0.3675 REMARK 3 S21: 0.2541 S22: -0.2769 S23: -0.8373 REMARK 3 S31: -0.3604 S32: -0.0630 S33: -0.6532 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 144:185) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3684 23.0585 13.5904 REMARK 3 T TENSOR REMARK 3 T11: 1.0391 T22: 0.4468 REMARK 3 T33: 0.4453 T12: -0.4703 REMARK 3 T13: 0.1735 T23: -0.1511 REMARK 3 L TENSOR REMARK 3 L11: 0.8968 L22: 0.4968 REMARK 3 L33: 0.6522 L12: 0.4551 REMARK 3 L13: 0.1847 L23: 0.1390 REMARK 3 S TENSOR REMARK 3 S11: -0.2956 S12: 0.2770 S13: 0.4093 REMARK 3 S21: -0.6878 S22: 0.1140 S23: -0.2274 REMARK 3 S31: -0.7935 S32: 0.1120 S33: 0.0549 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 186:255) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9565 17.8907 13.2922 REMARK 3 T TENSOR REMARK 3 T11: 1.1780 T22: 0.5457 REMARK 3 T33: 0.1989 T12: -0.6126 REMARK 3 T13: 0.0970 T23: -0.1135 REMARK 3 L TENSOR REMARK 3 L11: 1.5583 L22: 7.4827 REMARK 3 L33: -0.1771 L12: 2.1401 REMARK 3 L13: -0.0565 L23: 1.9558 REMARK 3 S TENSOR REMARK 3 S11: -0.3812 S12: 0.2076 S13: -0.2374 REMARK 3 S21: -1.2422 S22: 0.2356 S23: -0.0938 REMARK 3 S31: -1.3130 S32: 0.3166 S33: 0.1195 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 256:295) REMARK 3 ORIGIN FOR THE GROUP (A): -9.6191 27.4330 11.6774 REMARK 3 T TENSOR REMARK 3 T11: 1.2460 T22: 0.4432 REMARK 3 T33: 0.3720 T12: -0.5340 REMARK 3 T13: -0.1784 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 0.3349 L22: 3.4885 REMARK 3 L33: 1.6383 L12: 0.2822 REMARK 3 L13: 0.8554 L23: 2.6795 REMARK 3 S TENSOR REMARK 3 S11: -0.2625 S12: 0.2047 S13: 0.1597 REMARK 3 S21: -0.0508 S22: -0.0428 S23: 0.6415 REMARK 3 S31: -0.4999 S32: 0.3608 S33: 0.3330 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 296:306) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3451 31.9842 16.1567 REMARK 3 T TENSOR REMARK 3 T11: 1.3340 T22: 0.6940 REMARK 3 T33: 0.7453 T12: -0.5865 REMARK 3 T13: 0.4236 T23: -0.2740 REMARK 3 L TENSOR REMARK 3 L11: 0.1741 L22: 0.5813 REMARK 3 L33: 1.4713 L12: -0.0468 REMARK 3 L13: -0.0844 L23: -1.0853 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: 0.0611 S13: 0.1538 REMARK 3 S21: -0.4375 S22: 0.1132 S23: -0.0689 REMARK 3 S31: 0.5193 S32: -0.2703 S33: -0.0041 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3HY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-09. REMARK 100 THE DEPOSITION ID IS D_1000053726. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97618 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9692 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.53400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3HX3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM-POTASSIUM TARTRATE, 0.2M REMARK 280 LITHIUM SULFATE, PH 7.0, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 202.10667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.05333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 151.58000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.52667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 252.63333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 202.10667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 101.05333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.52667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 151.58000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 252.63333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 GLY A 4 REMARK 465 VAL A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 PHE A 8 REMARK 465 ARG A 9 REMARK 465 MET A 10 REMARK 465 VAL A 11 REMARK 465 PRO A 12 REMARK 465 GLU A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 GLN A 16 REMARK 465 GLU A 17 REMARK 465 LEU A 18 REMARK 465 ARG A 19 REMARK 465 ALA A 20 REMARK 465 GLN A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 307 REMARK 465 PRO A 308 REMARK 465 GLN A 309 REMARK 465 ALA A 310 REMARK 465 GLN A 311 REMARK 465 ALA A 312 REMARK 465 GLU A 313 REMARK 465 ASN A 314 REMARK 465 THR A 315 REMARK 465 ALA A 316 REMARK 465 PHE A 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -16.15 -44.44 REMARK 500 PHE A 34 -66.93 79.21 REMARK 500 PRO A 41 -165.31 -76.90 REMARK 500 HIS A 43 6.29 55.79 REMARK 500 LEU A 52 14.93 83.88 REMARK 500 PHE A 128 -10.15 -144.34 REMARK 500 ASP A 129 -70.59 -81.92 REMARK 500 CYS A 199 118.01 -160.62 REMARK 500 PHE A 204 48.47 -88.01 REMARK 500 SER A 230 -59.96 -125.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RET A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HX3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF CRALBP MUTANT R234W DBREF 3HY5 A 2 317 UNP P12271 RLBP1_HUMAN 2 317 SEQRES 1 A 316 SER GLU GLY VAL GLY THR PHE ARG MET VAL PRO GLU GLU SEQRES 2 A 316 GLU GLN GLU LEU ARG ALA GLN LEU GLU GLN LEU THR THR SEQRES 3 A 316 LYS ASP HIS GLY PRO VAL PHE GLY PRO CYS SER GLN LEU SEQRES 4 A 316 PRO ARG HIS THR LEU GLN LYS ALA LYS ASP GLU LEU ASN SEQRES 5 A 316 GLU ARG GLU GLU THR ARG GLU GLU ALA VAL ARG GLU LEU SEQRES 6 A 316 GLN GLU MET VAL GLN ALA GLN ALA ALA SER GLY GLU GLU SEQRES 7 A 316 LEU ALA VAL ALA VAL ALA GLU ARG VAL GLN GLU LYS ASP SEQRES 8 A 316 SER GLY PHE PHE LEU ARG PHE ILE ARG ALA ARG LYS PHE SEQRES 9 A 316 ASN VAL GLY ARG ALA TYR GLU LEU LEU ARG GLY TYR VAL SEQRES 10 A 316 ASN PHE ARG LEU GLN TYR PRO GLU LEU PHE ASP SER LEU SEQRES 11 A 316 SER PRO GLU ALA VAL ARG CYS THR ILE GLU ALA GLY TYR SEQRES 12 A 316 PRO GLY VAL LEU SER SER ARG ASP LYS TYR GLY ARG VAL SEQRES 13 A 316 VAL MET LEU PHE ASN ILE GLU ASN TRP GLN SER GLN GLU SEQRES 14 A 316 ILE THR PHE ASP GLU ILE LEU GLN ALA TYR CYS PHE ILE SEQRES 15 A 316 LEU GLU LYS LEU LEU GLU ASN GLU GLU THR GLN ILE ASN SEQRES 16 A 316 GLY PHE CYS ILE ILE GLU ASN PHE LYS GLY PHE THR MET SEQRES 17 A 316 GLN GLN ALA ALA SER LEU ARG THR SER ASP LEU ARG LYS SEQRES 18 A 316 MET VAL ASP MET LEU GLN ASP SER PHE PRO ALA ARG PHE SEQRES 19 A 316 LYS ALA ILE HIS PHE ILE HIS GLN PRO TRP TYR PHE THR SEQRES 20 A 316 THR THR TYR ASN VAL VAL LYS PRO PHE LEU LYS SER LYS SEQRES 21 A 316 LEU LEU GLU ARG VAL PHE VAL HIS GLY ASP ASP LEU SER SEQRES 22 A 316 GLY PHE TYR GLN GLU ILE ASP GLU ASN ILE LEU PRO SER SEQRES 23 A 316 ASP PHE GLY GLY THR LEU PRO LYS TYR ASP GLY LYS ALA SEQRES 24 A 316 VAL ALA GLU GLN LEU PHE GLY PRO GLN ALA GLN ALA GLU SEQRES 25 A 316 ASN THR ALA PHE HET RET A 400 21 HET TLA A 500 10 HETNAM RET RETINAL HETNAM TLA L(+)-TARTARIC ACID FORMUL 2 RET C20 H28 O FORMUL 3 TLA C4 H6 O6 HELIX 1 1 THR A 26 HIS A 30 5 5 HELIX 2 2 HIS A 43 ASP A 50 1 8 HELIX 3 3 GLU A 57 ALA A 75 1 19 HELIX 4 4 GLU A 78 VAL A 88 1 11 HELIX 5 5 ASP A 92 ARG A 103 1 12 HELIX 6 6 ASN A 106 TYR A 124 1 19 HELIX 7 7 SER A 132 GLY A 143 1 12 HELIX 8 8 THR A 172 LEU A 188 1 17 HELIX 9 9 ASN A 190 GLY A 197 1 8 HELIX 10 10 THR A 208 ALA A 213 1 6 HELIX 11 11 ARG A 216 GLN A 228 1 13 HELIX 12 12 TYR A 246 LYS A 255 1 10 HELIX 13 13 LYS A 259 GLU A 264 1 6 HELIX 14 14 ASP A 281 LEU A 285 5 5 HELIX 15 15 PRO A 286 GLY A 290 5 5 HELIX 16 16 ASP A 297 PHE A 306 1 10 SHEET 1 A 5 GLY A 146 ARG A 151 0 SHEET 2 A 5 VAL A 157 ASN A 162 -1 O LEU A 160 N GLY A 146 SHEET 3 A 5 PHE A 198 ASN A 203 1 O ILE A 201 N MET A 159 SHEET 4 A 5 PHE A 235 ILE A 241 1 O HIS A 239 N ILE A 200 SHEET 5 A 5 VAL A 266 VAL A 268 1 O PHE A 267 N ILE A 238 CISPEP 1 TYR A 144 PRO A 145 0 -0.22 SITE 1 AC1 10 PHE A 161 PHE A 173 TYR A 180 GLU A 202 SITE 2 AC1 10 PHE A 204 MET A 223 VAL A 224 ILE A 238 SITE 3 AC1 10 PHE A 240 PHE A 247 SITE 1 AC2 5 LYS A 104 ARG A 234 LYS A 236 LYS A 261 SITE 2 AC2 5 ARG A 265 CRYST1 71.930 71.930 303.160 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013902 0.008027 0.000000 0.00000 SCALE2 0.000000 0.016053 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003299 0.00000