PDB Short entry for 3I5G HEADER CONTRACTILE PROTEIN 05-JUL-09 3I5G TITLE CRYSTAL STRUCTURE OF RIGOR-LIKE SQUID MYOSIN S1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN HEAVY CHAIN ISOFORM A; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: MYOSIN REGULATORY LIGHT CHAIN LC-2, MANTLE MUSCLE; COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: MYOSIN CATALYTIC LIGHT CHAIN LC-1, MANTLE MUSCLE; COMPND 9 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LOLIGO PEALEI; SOURCE 3 ORGANISM_COMMON: LONGFIN INSHORE SQUID; SOURCE 4 ORGANISM_TAXID: 6621; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: TODARODES PACIFICUS; SOURCE 7 ORGANISM_COMMON: JAPANESE FLYING SQUID; SOURCE 8 ORGANISM_TAXID: 6637; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: TODARODES PACIFICUS; SOURCE 11 ORGANISM_COMMON: JAPANESE FLYING SQUID; SOURCE 12 ORGANISM_TAXID: 6637 KEYWDS RIGOR-LIKE, SQUID, MUSCLE MYOSIN, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.YANG,S.GOURINATH,M.KOVACS,L.NYITRAY,R.REUTZEL,D.M.HIMMEL,E.O'NEALL- AUTHOR 2 HENNESSEY,L.RESHETNIKOVA,A.G.SZENT-GYORGYI,J.H.BROWN,C.COHEN REVDAT 4 06-SEP-23 3I5G 1 REMARK SEQADV REVDAT 3 09-FEB-10 3I5G 1 SPRSDE REVDAT 2 04-AUG-09 3I5G 1 REMARK REVDAT 1 28-JUL-09 3I5G 0 SPRSDE 09-FEB-10 3I5G 2OVK JRNL AUTH Y.YANG,S.GOURINATH,M.KOVACS,L.NYITRAY,R.REUTZEL,D.M.HIMMEL, JRNL AUTH 2 E.O'NEALL-HENNESSEY,L.RESHETNIKOVA,A.G.SZENT-GYORGYI, JRNL AUTH 3 J.H.BROWN,C.COHEN JRNL TITL RIGOR-LIKE STRUCTURES FROM MUSCLE MYOSINS REVEAL KEY JRNL TITL 2 MECHANICAL ELEMENTS IN THE TRANSDUCTION PATHWAYS OF THIS JRNL TITL 3 ALLOSTERIC MOTOR. JRNL REF STRUCTURE V. 15 553 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17502101 JRNL DOI 10.1016/J.STR.2007.03.010 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 42948 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.252 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4327 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8898 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 79 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.538 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3I5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000053987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42948 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 46.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1S5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 5K MME, 150MM NACL, 100MM HEPES REMARK 280 (PH 7.6), 5% ETHYLENE GLYCOL, 5MM MGAC2, 2MM CAAC2, 2MM NAN3, REMARK 280 2MM BETA-MERCAPTOETHANOL, 50MM NA MALONATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 97.06900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.87550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 97.06900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.87550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 52890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 203 REMARK 465 LYS A 204 REMARK 465 ASP A 205 REMARK 465 LYS A 206 REMARK 465 LYS A 207 REMARK 465 GLU A 208 REMARK 465 GLU A 209 REMARK 465 GLU A 210 REMARK 465 LYS A 211 REMARK 465 LYS A 212 REMARK 465 LYS A 213 REMARK 465 ASP A 214 REMARK 465 GLU A 215 REMARK 465 LYS A 216 REMARK 465 PRO A 626 REMARK 465 PRO A 627 REMARK 465 ARG A 628 REMARK 465 ILE A 629 REMARK 465 LEU A 630 REMARK 465 THR A 631 REMARK 465 PRO A 632 REMARK 465 GLY A 633 REMARK 465 GLY A 634 REMARK 465 LYS A 635 REMARK 465 LYS A 636 REMARK 465 LYS A 637 REMARK 465 LYS A 638 REMARK 465 GLY A 639 REMARK 465 LYS A 640 REMARK 465 SER A 641 REMARK 465 ALA A 642 REMARK 465 ALA B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 ALA B 4 REMARK 465 PRO B 5 REMARK 465 ARG B 6 REMARK 465 GLU B 152 REMARK 465 ASP B 153 REMARK 465 LYS C 157 REMARK 465 SER C 158 REMARK 465 ASP C 159 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 239 N ARG A 241 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 100 N - CA - C ANGL. DEV. = -19.8 DEGREES REMARK 500 GLY C 138 N - CA - C ANGL. DEV. = -17.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 3 -104.47 67.21 REMARK 500 MET A 10 16.85 -69.58 REMARK 500 CYS A 14 -71.48 -94.66 REMARK 500 LEU A 15 131.87 101.95 REMARK 500 LYS A 32 -44.46 -138.69 REMARK 500 ASP A 40 -70.05 -99.40 REMARK 500 PHE A 41 35.71 -89.09 REMARK 500 GLN A 49 -62.18 -105.81 REMARK 500 LYS A 52 129.69 -171.73 REMARK 500 ASP A 54 52.21 -98.03 REMARK 500 ASP A 61 -93.67 -85.23 REMARK 500 LYS A 62 -13.54 -33.45 REMARK 500 GLN A 64 123.51 62.51 REMARK 500 GLU A 65 122.17 173.48 REMARK 500 ASP A 72 36.44 -79.10 REMARK 500 LEU A 94 43.71 -106.93 REMARK 500 ARG A 127 139.04 166.76 REMARK 500 ILE A 131 -25.06 -12.29 REMARK 500 GLN A 134 2.60 -69.55 REMARK 500 ARG A 145 -47.81 -26.42 REMARK 500 HIS A 151 133.99 -171.94 REMARK 500 SER A 178 -97.31 2.17 REMARK 500 LEU A 200 -84.85 -6.32 REMARK 500 ALA A 201 69.73 -171.98 REMARK 500 ASN A 228 -37.36 -28.23 REMARK 500 THR A 240 -58.01 14.42 REMARK 500 ARG A 247 41.29 -97.76 REMARK 500 SER A 282 -98.76 43.68 REMARK 500 ALA A 283 49.34 -92.79 REMARK 500 ASN A 286 -171.52 -59.47 REMARK 500 LEU A 294 33.72 -87.34 REMARK 500 ALA A 297 -33.53 -140.50 REMARK 500 PHE A 298 57.96 -142.99 REMARK 500 LEU A 306 44.12 83.07 REMARK 500 PRO A 309 69.21 -51.90 REMARK 500 ASP A 310 80.75 -151.48 REMARK 500 THR A 346 120.89 -25.93 REMARK 500 ASP A 347 -6.75 -55.68 REMARK 500 GLU A 373 33.50 -163.31 REMARK 500 ALA A 377 -176.75 -53.86 REMARK 500 ASP A 378 78.89 179.09 REMARK 500 THR A 380 -12.15 53.87 REMARK 500 LYS A 403 82.63 -158.18 REMARK 500 ILE A 406 -114.25 -118.87 REMARK 500 LYS A 407 -163.89 -170.59 REMARK 500 VAL A 408 -121.27 175.49 REMARK 500 GLN A 415 -10.70 -39.94 REMARK 500 ARG A 417 132.51 -28.15 REMARK 500 ASN A 418 -161.09 -124.83 REMARK 500 ALA A 453 156.14 -33.32 REMARK 500 REMARK 500 THIS ENTRY HAS 118 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 19 O REMARK 620 2 ASP C 22 OD1 91.9 REMARK 620 3 GLY C 23 O 80.3 103.7 REMARK 620 4 ASP C 25 OD1 144.4 122.1 81.4 REMARK 620 5 ASP C 27 O 118.8 85.3 159.0 77.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MLI A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OY6 RELATED DB: PDB REMARK 900 RELATED ID: 3I5F RELATED DB: PDB REMARK 900 RELATED ID: 3I5H RELATED DB: PDB REMARK 900 RELATED ID: 3I5I RELATED DB: PDB DBREF 3I5G A 1 839 UNP O44934 O44934_LOLPE 1 839 DBREF 3I5G B 1 153 UNP P08052 MLR_TODPA 1 153 DBREF 3I5G C 1 159 UNP P05945 MLE_TODPA 2 160 SEQADV 3I5G LYS A 238 UNP O44934 GLU 238 CONFLICT SEQADV 3I5G ALA A 744 UNP O44934 VAL 744 CONFLICT SEQRES 1 A 839 MET THR MET ASP PHE SER ASP PRO ASP MET GLU PHE LEU SEQRES 2 A 839 CYS LEU THR ARG GLN LYS LEU MET GLU ALA THR SER ILE SEQRES 3 A 839 PRO PHE ASP GLY LYS LYS ASN CYS TRP VAL PRO ASP PRO SEQRES 4 A 839 ASP PHE GLY PHE VAL GLY ALA GLU ILE GLN SER THR LYS SEQRES 5 A 839 GLY ASP GLU VAL THR VAL LYS THR ASP LYS THR GLN GLU SEQRES 6 A 839 THR ARG VAL VAL LYS LYS ASP ASP ILE GLY GLN ARG ASN SEQRES 7 A 839 PRO PRO LYS PHE GLU MET ASN MET ASP MET ALA ASN LEU SEQRES 8 A 839 THR PHE LEU ASN GLU ALA SER ILE LEU HIS ASN LEU ARG SEQRES 9 A 839 SER ARG TYR GLU SER GLY PHE ILE TYR THR TYR SER GLY SEQRES 10 A 839 LEU PHE CYS ILE ALA ILE ASN PRO TYR ARG ARG LEU PRO SEQRES 11 A 839 ILE TYR THR GLN GLY LEU VAL ASP LYS TYR ARG GLY LYS SEQRES 12 A 839 ARG ARG ALA GLU MET PRO PRO HIS LEU PHE SER ILE ALA SEQRES 13 A 839 ASP ASN ALA TYR GLN TYR MET LEU GLN ASP ARG GLU ASN SEQRES 14 A 839 GLN SER MET LEU ILE THR GLY GLU SER GLY ALA GLY LYS SEQRES 15 A 839 THR GLU ASN THR LYS LYS VAL ILE GLN TYR PHE ALA LEU SEQRES 16 A 839 VAL ALA ALA SER LEU ALA GLY LYS LYS ASP LYS LYS GLU SEQRES 17 A 839 GLU GLU LYS LYS LYS ASP GLU LYS LYS GLY THR LEU GLU SEQRES 18 A 839 ASP GLN ILE VAL GLN CYS ASN PRO VAL LEU GLU ALA TYR SEQRES 19 A 839 GLY ASN ALA LYS THR THR ARG ASN ASN ASN SER SER ARG SEQRES 20 A 839 PHE GLY LYS PHE ILE ARG ILE HIS PHE GLY THR GLN GLY SEQRES 21 A 839 LYS ILE ALA GLY ALA ASP ILE GLU THR TYR LEU LEU GLU SEQRES 22 A 839 LYS SER ARG VAL THR TYR GLN GLN SER ALA GLU ARG ASN SEQRES 23 A 839 TYR HIS ILE PHE TYR GLN LEU LEU SER PRO ALA PHE PRO SEQRES 24 A 839 GLU ASN ILE GLU LYS ILE LEU ALA VAL PRO ASP PRO GLY SEQRES 25 A 839 LEU TYR GLY PHE ILE ASN GLN GLY THR LEU THR VAL ASP SEQRES 26 A 839 GLY ILE ASP ASP GLU GLU GLU MET GLY LEU THR ASP THR SEQRES 27 A 839 ALA PHE ASP VAL LEU GLY PHE THR ASP GLU GLU LYS LEU SEQRES 28 A 839 SER MET TYR LYS CYS THR GLY CYS ILE LEU HIS LEU GLY SEQRES 29 A 839 GLU MET LYS TRP LYS GLN ARG GLY GLU GLN ALA GLU ALA SEQRES 30 A 839 ASP GLY THR ALA GLU ALA GLU LYS VAL ALA PHE LEU LEU SEQRES 31 A 839 GLY VAL ASN ALA GLY ASP LEU LEU LYS CYS LEU LEU LYS SEQRES 32 A 839 PRO LYS ILE LYS VAL GLY THR GLU TYR VAL THR GLN GLY SEQRES 33 A 839 ARG ASN LYS ASP GLN VAL THR ASN SER ILE ALA ALA LEU SEQRES 34 A 839 ALA LYS SER LEU TYR ASP ARG MET PHE ASN TRP LEU VAL SEQRES 35 A 839 ARG ARG VAL ASN GLN THR LEU ASP THR LYS ALA LYS ARG SEQRES 36 A 839 GLN PHE PHE ILE GLY VAL LEU ASP ILE ALA GLY PHE GLU SEQRES 37 A 839 ILE PHE ASP PHE ASN SER PHE GLU GLN LEU CYS ILE ASN SEQRES 38 A 839 TYR THR ASN GLU ARG LEU GLN GLN PHE PHE ASN HIS HIS SEQRES 39 A 839 MET PHE VAL LEU GLU GLN GLU GLU TYR LYS LYS GLU GLY SEQRES 40 A 839 ILE VAL TRP GLU PHE ILE ASP PHE GLY LEU ASP LEU GLN SEQRES 41 A 839 ALA CYS ILE GLU LEU ILE GLU LYS PRO MET GLY ILE LEU SEQRES 42 A 839 SER ILE LEU GLU GLU GLU CYS MET PHE PRO LYS ALA SER SEQRES 43 A 839 ASP THR SER PHE LYS ASN LYS LEU TYR ASP ASN HIS LEU SEQRES 44 A 839 GLY LYS ASN PRO MET PHE GLY LYS PRO LYS PRO PRO LYS SEQRES 45 A 839 ALA GLY CYS ALA GLU ALA HIS PHE CYS LEU HIS HIS TYR SEQRES 46 A 839 ALA GLY SER VAL SER TYR SER ILE ALA GLY TRP LEU ASP SEQRES 47 A 839 LYS ASN LYS ASP PRO ILE ASN GLU ASN VAL VAL GLU LEU SEQRES 48 A 839 LEU GLN ASN SER LYS GLU PRO ILE VAL LYS MET LEU PHE SEQRES 49 A 839 THR PRO PRO ARG ILE LEU THR PRO GLY GLY LYS LYS LYS SEQRES 50 A 839 LYS GLY LYS SER ALA ALA PHE GLN THR ILE SER SER VAL SEQRES 51 A 839 HIS LYS GLU SER LEU ASN LYS LEU MET LYS ASN LEU TYR SEQRES 52 A 839 SER THR HIS PRO HIS PHE VAL ARG CYS ILE ILE PRO ASN SEQRES 53 A 839 GLU LEU LYS THR PRO GLY LEU ILE ASP ALA ALA LEU VAL SEQRES 54 A 839 LEU HIS GLN LEU ARG CYS ASN GLY VAL LEU GLU GLY ILE SEQRES 55 A 839 ARG ILE CYS ARG LYS GLY PHE PRO ASN ARG ILE ILE TYR SEQRES 56 A 839 SER GLU PHE LYS GLN ARG TYR SER ILE LEU ALA PRO ASN SEQRES 57 A 839 ALA VAL PRO SER GLY PHE ALA ASP GLY LYS VAL VAL THR SEQRES 58 A 839 ASP LYS ALA LEU SER ALA LEU GLN LEU ASP PRO ASN GLU SEQRES 59 A 839 TYR ARG LEU GLY ASN THR LYS VAL PHE PHE LYS ALA GLY SEQRES 60 A 839 VAL LEU GLY MET LEU GLU ASP MET ARG ASP GLU ARG LEU SEQRES 61 A 839 SER LYS ILE ILE SER MET PHE GLN ALA HIS ILE ARG GLY SEQRES 62 A 839 TYR LEU MET ARG LYS ALA TYR LYS LYS LEU GLN ASP GLN SEQRES 63 A 839 ARG ILE GLY LEU THR LEU ILE GLN ARG ASN VAL ARG LYS SEQRES 64 A 839 TRP LEU VAL LEU ARG ASN TRP GLU TRP TRP ARG LEU PHE SEQRES 65 A 839 ASN LYS VAL LYS PRO LEU LEU SEQRES 1 B 153 ALA GLU GLU ALA PRO ARG ARG VAL LYS LEU SER GLN ARG SEQRES 2 B 153 GLN MET GLN GLU LEU LYS GLU ALA PHE THR MET ILE ASP SEQRES 3 B 153 GLN ASP ARG ASP GLY PHE ILE GLY MET GLU ASP LEU LYS SEQRES 4 B 153 ASP MET PHE SER SER LEU GLY ARG VAL PRO PRO ASP ASP SEQRES 5 B 153 GLU LEU ASN ALA MET LEU LYS GLU CYS PRO GLY GLN LEU SEQRES 6 B 153 ASN PHE THR ALA PHE LEU THR LEU PHE GLY GLU LYS VAL SEQRES 7 B 153 SER GLY THR ASP PRO GLU ASP ALA LEU ARG ASN ALA PHE SEQRES 8 B 153 SER MET PHE ASP GLU ASP GLY GLN GLY PHE ILE PRO GLU SEQRES 9 B 153 ASP TYR LEU LYS ASP LEU LEU GLU ASN MET GLY ASP ASN SEQRES 10 B 153 PHE SER LYS GLU GLU ILE LYS ASN VAL TRP LYS ASP ALA SEQRES 11 B 153 PRO LEU LYS ASN LYS GLN PHE ASN TYR ASN LYS MET VAL SEQRES 12 B 153 ASP ILE LYS GLY LYS ALA GLU ASP GLU ASP SEQRES 1 C 159 SER GLN LEU THR LYS ASP GLU ILE GLU GLU VAL ARG GLU SEQRES 2 C 159 VAL PHE ASP LEU PHE ASP PHE TRP ASP GLY ARG ASP GLY SEQRES 3 C 159 ASP VAL ASP ALA ALA LYS VAL GLY ASP LEU LEU ARG CYS SEQRES 4 C 159 LEU GLY MET ASN PRO THR GLU ALA GLN VAL HIS GLN HIS SEQRES 5 C 159 GLY GLY THR LYS LYS MET GLY GLU LYS ALA TYR LYS LEU SEQRES 6 C 159 GLU GLU ILE LEU PRO ILE TYR GLU GLU MET SER SER LYS SEQRES 7 C 159 ASP THR GLY THR ALA ALA ASP GLU PHE MET GLU ALA PHE SEQRES 8 C 159 LYS THR PHE ASP ARG GLU GLY GLN GLY LEU ILE SER SER SEQRES 9 C 159 ALA GLU ILE ARG ASN VAL LEU LYS MET LEU GLY GLU ARG SEQRES 10 C 159 ILE THR GLU ASP GLN CYS ASN ASP ILE PHE THR PHE CYS SEQRES 11 C 159 ASP ILE ARG GLU ASP ILE ASP GLY ASN ILE LYS TYR GLU SEQRES 12 C 159 ASP LEU MET LYS LYS VAL MET ALA GLY PRO PHE PRO ASP SEQRES 13 C 159 LYS SER ASP HET MLI A1001 7 HET CA C1001 1 HETNAM MLI MALONATE ION HETNAM CA CALCIUM ION FORMUL 4 MLI C3 H2 O4 2- FORMUL 5 CA CA 2+ FORMUL 6 HOH *79(H2 O) HELIX 1 1 ASP A 7 PHE A 12 5 6 HELIX 2 2 THR A 16 THR A 24 1 9 HELIX 3 3 LYS A 70 ILE A 74 5 5 HELIX 4 4 PRO A 79 GLU A 83 5 5 HELIX 5 5 ASP A 87 LEU A 91 5 5 HELIX 6 6 ASN A 95 GLU A 108 1 14 HELIX 7 7 LEU A 136 TYR A 140 5 5 HELIX 8 8 ARG A 144 MET A 148 5 5 HELIX 9 9 HIS A 151 ARG A 167 1 17 HELIX 10 10 GLU A 177 ALA A 180 5 4 HELIX 11 11 GLY A 181 ALA A 198 1 18 HELIX 12 12 THR A 219 GLN A 226 1 8 HELIX 13 13 CYS A 227 GLY A 235 1 9 HELIX 14 14 GLU A 273 TYR A 279 5 7 HELIX 15 15 TYR A 287 LEU A 294 1 8 HELIX 16 16 PHE A 298 ILE A 305 1 8 HELIX 17 17 ASP A 310 LEU A 313 5 4 HELIX 18 18 TYR A 314 GLN A 319 1 6 HELIX 19 19 ASP A 328 LEU A 343 1 16 HELIX 20 20 GLU A 348 GLY A 364 1 17 HELIX 21 21 THR A 380 GLY A 391 1 12 HELIX 22 22 ASN A 393 LYS A 403 1 11 HELIX 23 23 ASN A 418 ASP A 450 1 33 HELIX 24 24 SER A 474 GLU A 506 1 33 HELIX 25 25 ASP A 514 ASP A 518 5 5 HELIX 26 26 LEU A 519 LYS A 528 1 10 HELIX 27 27 GLY A 531 GLU A 539 1 9 HELIX 28 28 CYS A 540 PHE A 542 5 3 HELIX 29 29 SER A 546 LEU A 559 1 14 HELIX 30 30 GLY A 595 LYS A 601 1 7 HELIX 31 31 ASN A 605 GLN A 613 1 9 HELIX 32 32 LYS A 616 LEU A 623 1 8 HELIX 33 33 THR A 646 TYR A 663 1 18 HELIX 34 34 ASP A 685 GLY A 697 1 13 HELIX 35 35 GLY A 697 LYS A 707 1 11 HELIX 36 36 TYR A 715 SER A 723 1 9 HELIX 37 37 ILE A 724 ALA A 726 5 3 HELIX 38 38 ASP A 736 ALA A 747 1 12 HELIX 39 39 GLY A 767 ARG A 824 1 58 HELIX 40 40 TRP A 826 LYS A 836 1 11 HELIX 41 41 SER B 11 ASP B 26 1 16 HELIX 42 42 GLY B 34 LEU B 45 1 12 HELIX 43 43 PRO B 50 GLU B 60 1 11 HELIX 44 44 PHE B 67 LEU B 73 1 7 HELIX 45 45 PRO B 83 MET B 93 1 11 HELIX 46 46 PRO B 103 ASN B 113 1 11 HELIX 47 47 SER B 119 LYS B 128 1 10 HELIX 48 48 ASN B 138 LYS B 148 1 11 HELIX 49 49 THR C 4 ASP C 22 1 19 HELIX 50 50 LYS C 32 LEU C 40 1 9 HELIX 51 51 THR C 45 GLN C 51 1 7 HELIX 52 52 LYS C 64 SER C 76 1 13 HELIX 53 53 ALA C 83 ASP C 95 1 13 HELIX 54 54 SER C 103 LEU C 114 1 12 HELIX 55 55 THR C 119 CYS C 130 1 12 HELIX 56 56 TYR C 142 GLY C 152 1 11 SHEET 1 A 4 ASN A 33 ASP A 38 0 SHEET 2 A 4 GLY A 42 SER A 50 -1 O VAL A 44 N VAL A 36 SHEET 3 A 4 THR A 57 THR A 60 -1 O LYS A 59 N GLU A 47 SHEET 4 A 4 THR A 66 ARG A 67 -1 O ARG A 67 N VAL A 58 SHEET 1 B 7 TYR A 113 SER A 116 0 SHEET 2 B 7 PHE A 119 ILE A 123 -1 O ILE A 121 N THR A 114 SHEET 3 B 7 HIS A 666 ILE A 673 1 O ARG A 671 N CYS A 120 SHEET 4 B 7 GLN A 170 THR A 175 1 N LEU A 173 O HIS A 668 SHEET 5 B 7 PHE A 457 ASP A 463 1 O LEU A 462 N MET A 172 SHEET 6 B 7 GLY A 249 PHE A 256 -1 N ILE A 252 O VAL A 461 SHEET 7 B 7 ILE A 262 TYR A 270 -1 O TYR A 270 N GLY A 249 SHEET 1 C 2 ASN A 236 THR A 239 0 SHEET 2 C 2 ASN A 242 SER A 246 -1 O ASN A 242 N THR A 239 SHEET 1 D 2 LYS A 369 ARG A 371 0 SHEET 2 D 2 GLN A 374 GLU A 376 -1 O GLU A 376 N LYS A 369 SHEET 1 E 3 PHE A 565 GLY A 566 0 SHEET 2 E 3 PHE A 580 HIS A 584 -1 O CYS A 581 N GLY A 566 SHEET 3 E 3 GLY A 587 TYR A 591 -1 O TYR A 591 N PHE A 580 SHEET 1 F 3 ASN A 711 ILE A 714 0 SHEET 2 F 3 LYS A 761 PHE A 764 -1 O PHE A 764 N ASN A 711 SHEET 3 F 3 TYR A 755 LEU A 757 -1 N ARG A 756 O PHE A 763 SHEET 1 G 2 LEU B 132 LYS B 133 0 SHEET 2 G 2 GLN B 136 PHE B 137 -1 O GLN B 136 N LYS B 133 SHEET 1 H 2 VAL C 28 ASP C 29 0 SHEET 2 H 2 ALA C 62 TYR C 63 -1 O TYR C 63 N VAL C 28 SHEET 1 I 2 LEU C 101 ILE C 102 0 SHEET 2 I 2 ILE C 140 LYS C 141 -1 O ILE C 140 N ILE C 102 LINK O ASP C 19 CA CA C1001 1555 1555 2.74 LINK OD1 ASP C 22 CA CA C1001 1555 1555 2.74 LINK O GLY C 23 CA CA C1001 1555 1555 2.69 LINK OD1 ASP C 25 CA CA C1001 1555 1555 2.83 LINK O ASP C 27 CA CA C1001 1555 1555 2.61 SITE 1 AC1 2 LYS A 798 ASP C 125 SITE 1 AC2 5 ASP C 19 ASP C 22 GLY C 23 ASP C 25 SITE 2 AC2 5 ASP C 27 CRYST1 194.138 101.751 80.651 90.00 105.74 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005151 0.000000 0.001452 0.00000 SCALE2 0.000000 0.009828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012882 0.00000