PDB Short entry for 3I7Z HEADER HYDROLASE 09-JUL-09 3I7Z TITLE PROTEIN TYROSINE PHOSPHATASE 1B - TRANSITION STATE ANALOG FOR THE TITLE 2 FIRST CATALYTIC STEP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-321; COMPND 5 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1B, PTP-1B; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: EGFR RECEPTOR FRAGMENT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTP1B, PTPN1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-19B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS HYDROLASE, P-LOOP, WPD-LOOP, PROTEIN PHOSPHATASE, EGFR RECEPTOR, KEYWDS 2 VANADATE, ACETYLATION, ENDOPLASMIC RETICULUM, MEMBRANE, OXIDATION, KEYWDS 3 PHOSPHOPROTEIN, POLYMORPHISM EXPDTA X-RAY DIFFRACTION AUTHOR T.A.S.BRANDAO,S.J.JOHNSON,A.C.HENGGE REVDAT 3 06-SEP-23 3I7Z 1 REMARK LINK REVDAT 2 09-JUN-10 3I7Z 1 JRNL REVDAT 1 16-MAR-10 3I7Z 0 JRNL AUTH T.A.BRANDAO,A.C.HENGGE,S.J.JOHNSON JRNL TITL INSIGHTS INTO THE REACTION OF PROTEIN-TYROSINE PHOSPHATASE JRNL TITL 2 1B: CRYSTAL STRUCTURES FOR TRANSITION STATE ANALOGS OF BOTH JRNL TITL 3 CATALYTIC STEPS. JRNL REF J.BIOL.CHEM. V. 285 15874 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20236928 JRNL DOI 10.1074/JBC.M109.066951 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 52.8 REMARK 3 NUMBER OF REFLECTIONS : 24156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.6390 - 4.7750 0.55 2699 120 0.1560 0.1850 REMARK 3 2 4.7750 - 3.7930 0.54 2571 145 0.1520 0.1610 REMARK 3 3 3.7930 - 3.3150 0.53 2549 143 0.1910 0.2440 REMARK 3 4 3.3150 - 3.0120 0.53 2528 157 0.2380 0.2800 REMARK 3 5 3.0120 - 2.7960 0.52 2524 133 0.2580 0.3060 REMARK 3 6 2.7960 - 2.6320 0.52 2513 146 0.2680 0.3080 REMARK 3 7 2.6320 - 2.5000 0.52 2497 129 0.2960 0.3050 REMARK 3 8 2.5000 - 2.3910 0.52 2497 136 0.2960 0.3140 REMARK 3 9 2.3910 - 2.3000 0.52 2544 125 0.3360 0.3490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 62.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 75.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.90800 REMARK 3 B22 (A**2) : -6.90800 REMARK 3 B33 (A**2) : 8.99400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2561 REMARK 3 ANGLE : 1.268 3450 REMARK 3 CHIRALITY : 0.079 362 REMARK 3 PLANARITY : 0.005 443 REMARK 3 DIHEDRAL : 18.064 965 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:20) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1746 -9.8832 -8.8728 REMARK 3 T TENSOR REMARK 3 T11: 0.4807 T22: 0.6693 REMARK 3 T33: 0.6831 T12: 0.1452 REMARK 3 T13: 0.1740 T23: 0.0827 REMARK 3 L TENSOR REMARK 3 L11: 0.1678 L22: 0.1325 REMARK 3 L33: 0.0567 L12: -0.0123 REMARK 3 L13: 0.0540 L23: 0.0585 REMARK 3 S TENSOR REMARK 3 S11: 0.3991 S12: 0.0342 S13: 0.3113 REMARK 3 S21: 0.1841 S22: -0.0569 S23: -0.1354 REMARK 3 S31: 0.0063 S32: -0.2302 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 21:31) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2273 -27.8128 -8.6173 REMARK 3 T TENSOR REMARK 3 T11: 0.4268 T22: 0.8644 REMARK 3 T33: 0.4867 T12: 0.0189 REMARK 3 T13: 0.0122 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.0684 L22: 0.1219 REMARK 3 L33: -0.0154 L12: 0.1088 REMARK 3 L13: -0.1322 L23: -0.0039 REMARK 3 S TENSOR REMARK 3 S11: -0.0195 S12: 0.2818 S13: -0.0288 REMARK 3 S21: 0.7476 S22: -0.1801 S23: -0.1579 REMARK 3 S31: 0.0109 S32: -0.8765 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 32:40) REMARK 3 ORIGIN FOR THE GROUP (A): -15.8004 -48.4971 -9.7383 REMARK 3 T TENSOR REMARK 3 T11: 0.3083 T22: 0.7622 REMARK 3 T33: 0.8938 T12: -0.1485 REMARK 3 T13: 0.1562 T23: 0.0779 REMARK 3 L TENSOR REMARK 3 L11: 0.0574 L22: -0.0017 REMARK 3 L33: 0.0500 L12: 0.0129 REMARK 3 L13: -0.0347 L23: -0.0598 REMARK 3 S TENSOR REMARK 3 S11: -0.5211 S12: 0.6444 S13: -0.6640 REMARK 3 S21: 0.1268 S22: -0.2328 S23: -0.4290 REMARK 3 S31: -0.1078 S32: -0.0358 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 41:55) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6127 -41.9136 -8.8352 REMARK 3 T TENSOR REMARK 3 T11: 0.3167 T22: 0.9966 REMARK 3 T33: 0.5785 T12: 0.0134 REMARK 3 T13: 0.0315 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 0.0959 L22: 0.3152 REMARK 3 L33: 0.0478 L12: 0.1492 REMARK 3 L13: -0.2039 L23: 0.2056 REMARK 3 S TENSOR REMARK 3 S11: -0.2427 S12: -0.3317 S13: -0.7270 REMARK 3 S21: 0.0946 S22: 0.2954 S23: 0.4669 REMARK 3 S31: -0.0793 S32: -0.6764 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 56:65) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8821 -49.8823 -20.2578 REMARK 3 T TENSOR REMARK 3 T11: 0.2823 T22: 0.9246 REMARK 3 T33: 0.7484 T12: -0.0558 REMARK 3 T13: 0.0567 T23: -0.1945 REMARK 3 L TENSOR REMARK 3 L11: -0.0303 L22: -0.0913 REMARK 3 L33: 0.1027 L12: 0.1152 REMARK 3 L13: 0.0500 L23: 0.0808 REMARK 3 S TENSOR REMARK 3 S11: -0.4268 S12: 0.2382 S13: -0.6557 REMARK 3 S21: 0.0765 S22: 0.6331 S23: 0.3569 REMARK 3 S31: -0.0104 S32: -0.5036 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 66:127) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5971 -37.3853 -16.2913 REMARK 3 T TENSOR REMARK 3 T11: 0.2410 T22: 0.8362 REMARK 3 T33: 0.4168 T12: 0.0042 REMARK 3 T13: -0.0271 T23: -0.0806 REMARK 3 L TENSOR REMARK 3 L11: 1.1786 L22: 0.3316 REMARK 3 L33: 0.2990 L12: -0.2349 REMARK 3 L13: -0.9507 L23: -0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.1911 S12: 0.1205 S13: -0.1177 REMARK 3 S21: 0.0534 S22: 0.1174 S23: -0.0237 REMARK 3 S31: 0.0530 S32: 0.0536 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 128:147) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2287 -45.2278 -19.0383 REMARK 3 T TENSOR REMARK 3 T11: 0.3017 T22: 0.9867 REMARK 3 T33: 0.6297 T12: 0.0965 REMARK 3 T13: 0.0884 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 0.2636 L22: 0.0027 REMARK 3 L33: 0.3839 L12: -0.2266 REMARK 3 L13: 0.1959 L23: -0.1450 REMARK 3 S TENSOR REMARK 3 S11: -0.4790 S12: -0.3991 S13: 0.0863 REMARK 3 S21: -0.1590 S22: -0.0484 S23: 0.4250 REMARK 3 S31: 0.2702 S32: 0.5241 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 148:230) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8326 -29.4556 -19.2286 REMARK 3 T TENSOR REMARK 3 T11: 0.2495 T22: 0.8856 REMARK 3 T33: 0.4425 T12: -0.0495 REMARK 3 T13: -0.0061 T23: -0.0494 REMARK 3 L TENSOR REMARK 3 L11: 0.9682 L22: 0.7577 REMARK 3 L33: 0.2568 L12: -1.0140 REMARK 3 L13: -1.0802 L23: -0.1721 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.3057 S13: 0.1935 REMARK 3 S21: -0.0060 S22: 0.0980 S23: -0.1863 REMARK 3 S31: 0.0005 S32: 0.1896 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 231:248) REMARK 3 ORIGIN FOR THE GROUP (A): -14.2705 -15.2306 -24.4698 REMARK 3 T TENSOR REMARK 3 T11: 0.4442 T22: 0.9003 REMARK 3 T33: 0.5254 T12: 0.1442 REMARK 3 T13: 0.0042 T23: 0.1544 REMARK 3 L TENSOR REMARK 3 L11: -0.0579 L22: 0.0342 REMARK 3 L33: 0.0806 L12: 0.0463 REMARK 3 L13: -0.0033 L23: -0.0620 REMARK 3 S TENSOR REMARK 3 S11: 0.2633 S12: -0.0273 S13: 0.0861 REMARK 3 S21: -0.1212 S22: -0.2643 S23: -0.0586 REMARK 3 S31: -0.0761 S32: -0.4594 S33: -0.0000 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 249:298) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3971 -17.5021 -16.5877 REMARK 3 T TENSOR REMARK 3 T11: 0.2993 T22: 0.7655 REMARK 3 T33: 0.5857 T12: -0.0458 REMARK 3 T13: -0.0018 T23: 0.0801 REMARK 3 L TENSOR REMARK 3 L11: -0.0440 L22: 0.9571 REMARK 3 L33: -0.0741 L12: -0.5203 REMARK 3 L13: 0.1779 L23: 0.9102 REMARK 3 S TENSOR REMARK 3 S11: -0.2189 S12: 0.3043 S13: 0.0582 REMARK 3 S21: -0.0736 S22: 0.0820 S23: -0.4375 REMARK 3 S31: -0.0351 S32: -0.0012 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2900 -36.6707 0.1512 REMARK 3 T TENSOR REMARK 3 T11: 0.6953 T22: 0.7792 REMARK 3 T33: 0.8884 T12: 0.0261 REMARK 3 T13: 0.0800 T23: 0.1975 REMARK 3 L TENSOR REMARK 3 L11: 0.0046 L22: -0.0676 REMARK 3 L33: -0.0526 L12: 0.0951 REMARK 3 L13: 0.0053 L23: -0.1039 REMARK 3 S TENSOR REMARK 3 S11: -0.2270 S12: 0.3098 S13: -0.9998 REMARK 3 S21: 0.3591 S22: -0.0706 S23: 0.5467 REMARK 3 S31: -0.1763 S32: 0.0693 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3I7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-09. REMARK 100 THE DEPOSITION ID IS D_1000054078. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC BLUE OPTICS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.4SSI REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24185 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.580 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.58 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: PDB ENTRY 2CM2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP: 2 UL OF PROTEIN SOLUTION, 0.5 UL REMARK 280 SUCROSE 30% (W/V) AND 3 UL OF PRECIPITANT SOLUTION (0.1 M HEPES REMARK 280 PH 7.5, 0.2 M MAGNESIUM ACETATE AND 15-17% POLYETHYLENE GLYCOL REMARK 280 8000). WELL: 500 UL OF PRECIPITANT SOLUTION. THE PROTEIN REMARK 280 SOLUTION WAS PREPARED AS FOLLOWS: 0.36 UL OF 100 MM OF NA3VO4 REMARK 280 AND 10 UL OF 50 MM OF DADEYL PEPTIDE (AT PH 8.5-9.0) WERE MIXED REMARK 280 AND ALLOWED TO REACT FOR 1-1.5 HOUR; THEN, 50 UL OF NATIVE PTP1B REMARK 280 (12 MG/ML IN 10 MM TRIS PH 7.5, 25 MM NACL, 0.2 MM EDTA AND 3 MM REMARK 280 DTT) WAS ADDED AND THE SOLUTION USED IMMEDIATELY FOR REMARK 280 CRYSTALLIZATION. VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.54000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.08000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 79.08000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.54000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 PRO A 302 REMARK 465 PRO A 303 REMARK 465 GLU A 304 REMARK 465 HIS A 305 REMARK 465 ILE A 306 REMARK 465 PRO A 307 REMARK 465 PRO A 308 REMARK 465 PRO A 309 REMARK 465 PRO A 310 REMARK 465 ARG A 311 REMARK 465 PRO A 312 REMARK 465 PRO A 313 REMARK 465 LYS A 314 REMARK 465 ARG A 315 REMARK 465 ILE A 316 REMARK 465 LEU A 317 REMARK 465 GLU A 318 REMARK 465 PRO A 319 REMARK 465 HIS A 320 REMARK 465 ASN A 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 31 CD PRO A 31 N -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 31 CA - N - CD ANGL. DEV. = -8.6 DEGREES REMARK 500 PRO A 31 N - CD - CG ANGL. DEV. = 11.2 DEGREES REMARK 500 TYR B 992 CB - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 215 -137.38 -132.53 REMARK 500 VAL A 244 116.43 -38.60 REMARK 500 ILE A 261 107.73 73.36 REMARK 500 GLU A 297 26.61 -77.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 VO4 A 322 V REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 992 OH REMARK 620 2 VO4 A 322 O1 91.1 REMARK 620 3 VO4 A 322 O2 92.2 116.6 REMARK 620 4 VO4 A 322 O3 86.7 117.8 125.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE VO4 A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 323 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CM2 RELATED DB: PDB REMARK 900 PROTEIN TYROSINE PHOSPHATASE 1B APO FORM REMARK 900 RELATED ID: 1PTU RELATED DB: PDB REMARK 900 PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH PHOSPHOTYROSINE- REMARK 900 CONTAINING HEXA-PEPTIDE (DADEPYL-NH2) REMARK 900 RELATED ID: 1A5Y RELATED DB: PDB REMARK 900 PROTEIN TYROSINE PHOSPHATASE 1B CYSTEINYL-PHOSPHATE INTERMEDIATE REMARK 900 RELATED ID: 2HNQ RELATED DB: PDB REMARK 900 PROTEIN TYROSINE PHOSPHATASE 1B COMPLEXED WITH TUNGSTATE REMARK 900 RELATED ID: 3I80 RELATED DB: PDB REMARK 900 PROTEIN TYROSINE PHOSPHATASE 1B - TRANSITION STATE ANALOG FOR THE REMARK 900 SECOND CATALYTIC STEP DBREF 3I7Z A 1 321 UNP P18031 PTN1_HUMAN 1 321 DBREF 3I7Z B 988 993 PDB 3I7Z 3I7Z 988 993 SEQRES 1 A 321 MET GLU MET GLU LYS GLU PHE GLU GLN ILE ASP LYS SER SEQRES 2 A 321 GLY SER TRP ALA ALA ILE TYR GLN ASP ILE ARG HIS GLU SEQRES 3 A 321 ALA SER ASP PHE PRO CYS ARG VAL ALA LYS LEU PRO LYS SEQRES 4 A 321 ASN LYS ASN ARG ASN ARG TYR ARG ASP VAL SER PRO PHE SEQRES 5 A 321 ASP HIS SER ARG ILE LYS LEU HIS GLN GLU ASP ASN ASP SEQRES 6 A 321 TYR ILE ASN ALA SER LEU ILE LYS MET GLU GLU ALA GLN SEQRES 7 A 321 ARG SER TYR ILE LEU THR GLN GLY PRO LEU PRO ASN THR SEQRES 8 A 321 CYS GLY HIS PHE TRP GLU MET VAL TRP GLU GLN LYS SER SEQRES 9 A 321 ARG GLY VAL VAL MET LEU ASN ARG VAL MET GLU LYS GLY SEQRES 10 A 321 SER LEU LYS CYS ALA GLN TYR TRP PRO GLN LYS GLU GLU SEQRES 11 A 321 LYS GLU MET ILE PHE GLU ASP THR ASN LEU LYS LEU THR SEQRES 12 A 321 LEU ILE SER GLU ASP ILE LYS SER TYR TYR THR VAL ARG SEQRES 13 A 321 GLN LEU GLU LEU GLU ASN LEU THR THR GLN GLU THR ARG SEQRES 14 A 321 GLU ILE LEU HIS PHE HIS TYR THR THR TRP PRO ASP PHE SEQRES 15 A 321 GLY VAL PRO GLU SER PRO ALA SER PHE LEU ASN PHE LEU SEQRES 16 A 321 PHE LYS VAL ARG GLU SER GLY SER LEU SER PRO GLU HIS SEQRES 17 A 321 GLY PRO VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG SEQRES 18 A 321 SER GLY THR PHE CYS LEU ALA ASP THR CYS LEU LEU LEU SEQRES 19 A 321 MET ASP LYS ARG LYS ASP PRO SER SER VAL ASP ILE LYS SEQRES 20 A 321 LYS VAL LEU LEU GLU MET ARG LYS PHE ARG MET GLY LEU SEQRES 21 A 321 ILE GLN THR ALA ASP GLN LEU ARG PHE SER TYR LEU ALA SEQRES 22 A 321 VAL ILE GLU GLY ALA LYS PHE ILE MET GLY ASP SER SER SEQRES 23 A 321 VAL GLN ASP GLN TRP LYS GLU LEU SER HIS GLU ASP LEU SEQRES 24 A 321 GLU PRO PRO PRO GLU HIS ILE PRO PRO PRO PRO ARG PRO SEQRES 25 A 321 PRO LYS ARG ILE LEU GLU PRO HIS ASN SEQRES 1 B 6 ASP ALA ASP GLU TYR LEU HET VO4 A 322 4 HET TRS A 323 8 HET GOL A 324 6 HET GOL A 325 6 HET TRS B 323 8 HETNAM VO4 VANADATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 VO4 O4 V 3- FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 8 HOH *150(H2 O) HELIX 1 1 GLU A 2 SER A 13 1 12 HELIX 2 2 SER A 15 ALA A 27 1 13 HELIX 3 3 CYS A 32 LEU A 37 1 6 HELIX 4 4 PRO A 38 ASN A 44 5 7 HELIX 5 5 THR A 91 GLN A 102 1 12 HELIX 6 6 SER A 187 SER A 201 1 15 HELIX 7 7 ILE A 219 ARG A 238 1 20 HELIX 8 8 ASP A 240 VAL A 244 5 5 HELIX 9 9 ASP A 245 ARG A 254 1 10 HELIX 10 10 THR A 263 MET A 282 1 20 HELIX 11 11 SER A 286 HIS A 296 1 11 SHEET 1 A 9 ARG A 56 LYS A 58 0 SHEET 2 A 9 TYR A 66 MET A 74 -1 O ALA A 69 N ILE A 57 SHEET 3 A 9 ARG A 79 THR A 84 -1 O TYR A 81 N ILE A 72 SHEET 4 A 9 VAL A 211 HIS A 214 1 O VAL A 213 N ILE A 82 SHEET 5 A 9 GLY A 106 MET A 109 1 N VAL A 108 O VAL A 212 SHEET 6 A 9 GLU A 167 TYR A 176 1 O PHE A 174 N VAL A 107 SHEET 7 A 9 TYR A 153 ASN A 162 -1 N LEU A 160 O ARG A 169 SHEET 8 A 9 LEU A 140 ILE A 149 -1 N LYS A 141 O GLU A 161 SHEET 9 A 9 MET A 133 PHE A 135 -1 N MET A 133 O LEU A 142 SHEET 1 B 2 MET A 114 GLU A 115 0 SHEET 2 B 2 SER A 118 LEU A 119 -1 O SER A 118 N GLU A 115 LINK V VO4 A 322 OH TYR B 992 1555 1555 2.12 SITE 1 AC1 10 ASP A 181 CYS A 215 SER A 216 ALA A 217 SITE 2 AC1 10 GLY A 218 ILE A 219 GLY A 220 ARG A 221 SITE 3 AC1 10 HOH A 465 TYR B 992 SITE 1 AC2 3 HIS A 54 LYS A 128 GLU A 130 SITE 1 AC3 6 GLU A 26 ALA A 27 GLU A 159 GLU A 161 SITE 2 AC3 6 HOH A 383 ASP B 988 SITE 1 AC4 4 PRO A 89 CYS A 92 HOH A 357 HOH A 401 SITE 1 AC5 5 ARG A 24 HIS A 25 ALA A 27 GLU B 991 SITE 2 AC5 5 LEU B 993 CRYST1 88.020 88.020 118.620 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011361 0.006559 0.000000 0.00000 SCALE2 0.000000 0.013119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008430 0.00000