PDB Short entry for 3IIK HEADER PROTEIN BINDING, TRANSFERASE 02-AUG-09 3IIK TITLE THE STRUCTURE OF HCINAP-SO4 COMPLEX AT 1.95 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: COILIN-INTERACTING NUCLEAR ATPASE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: COILIN-INTERACTING NUCLEAR ATPASE PROTEIN, TAF9 RNA COMPND 5 POLYMERASE II, TATA BOX BINDING PROTEIN (TBP)-ASSOCIATED FACTOR, COMPND 6 32KDA, ISOFORM CRA_B, HUMAN ADENYLATE KINASE 6; COMPND 7 EC: 2.7.4.3; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CINAP, TAF9, HCG_37060; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-3 KEYWDS ALPHA AND BETA PROTEINS (A/B), PROTEIN BINDING, TRANSFERASE, KEYWDS 2 PHOSPHOTRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.E.ZOGRAPHOS,C.E.DRAKOU,D.D.LEONIDAS REVDAT 5 06-SEP-23 3IIK 1 REMARK SEQADV REVDAT 4 18-JAN-12 3IIK 1 JRNL REVDAT 3 23-NOV-11 3IIK 1 JRNL REVDAT 2 05-OCT-11 3IIK 1 JRNL VERSN REMARK REVDAT 1 06-OCT-10 3IIK 0 JRNL AUTH C.E.DRAKOU,A.MALEKKOU,J.M.HAYES,C.W.LEDERER,D.D.LEONIDAS, JRNL AUTH 2 N.G.OIKONOMAKOS,A.I.LAMOND,N.SANTAMA,S.E.ZOGRAPHOS JRNL TITL HCINAP IS AN ATYPICAL MAMMALIAN NUCLEAR ADENYLATE KINASE JRNL TITL 2 WITH AN ATPASE MOTIF: STRUCTURAL AND FUNCTIONAL STUDIES. JRNL REF PROTEINS V. 80 206 2012 JRNL REFN ISSN 0887-3585 JRNL PMID 22038794 JRNL DOI 10.1002/PROT.23186 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1202 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1648 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1441 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1521 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2074 ; 1.113 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 184 ; 4.896 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 85 ;38.816 ;25.765 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 267 ;13.523 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;10.399 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 221 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1171 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 886 ; 0.499 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1445 ; 0.946 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 635 ; 1.583 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 624 ; 2.659 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 2 REMARK 3 ORIGIN FOR THE GROUP (A): -43.7582 17.3413 -9.2689 REMARK 3 T TENSOR REMARK 3 T11: 0.4611 T22: 0.5637 REMARK 3 T33: 0.5495 T12: 0.1508 REMARK 3 T13: 0.0325 T23: -0.2642 REMARK 3 L TENSOR REMARK 3 L11: 9.5266 L22: 12.7422 REMARK 3 L33: 11.5860 L12: -3.5611 REMARK 3 L13: -2.4991 L23: 6.5030 REMARK 3 S TENSOR REMARK 3 S11: -0.1414 S12: -1.2451 S13: 1.2751 REMARK 3 S21: 0.9325 S22: -0.0188 S23: 0.5540 REMARK 3 S31: -1.2248 S32: -1.1271 S33: 0.1602 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): -35.6967 2.5772 1.3983 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.1208 REMARK 3 T33: 0.1507 T12: 0.0039 REMARK 3 T13: -0.0039 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 0.9085 L22: 1.6862 REMARK 3 L33: 1.3016 L12: 0.0784 REMARK 3 L13: -0.0439 L23: -0.4799 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: -0.0933 S13: 0.1610 REMARK 3 S21: 0.2210 S22: 0.0337 S23: -0.1052 REMARK 3 S31: -0.1836 S32: 0.0352 S33: 0.0612 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -49.2947 -2.6392 10.0971 REMARK 3 T TENSOR REMARK 3 T11: 0.2896 T22: 0.1458 REMARK 3 T33: 0.1390 T12: 0.0616 REMARK 3 T13: 0.0679 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 6.1521 L22: 1.5511 REMARK 3 L33: 4.1460 L12: 3.0586 REMARK 3 L13: -1.5597 L23: -0.7108 REMARK 3 S TENSOR REMARK 3 S11: 0.3153 S12: -0.5202 S13: -0.1273 REMARK 3 S21: 0.2381 S22: -0.2304 S23: -0.0187 REMARK 3 S31: 0.0320 S32: -0.0299 S33: -0.0849 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 46 A 55 REMARK 3 ORIGIN FOR THE GROUP (A): -48.0823 -17.3934 13.0969 REMARK 3 T TENSOR REMARK 3 T11: 0.5325 T22: 0.6907 REMARK 3 T33: 0.8616 T12: 0.4356 REMARK 3 T13: -0.1701 T23: -0.0922 REMARK 3 L TENSOR REMARK 3 L11: 7.1903 L22: 5.0338 REMARK 3 L33: 4.4321 L12: -3.6869 REMARK 3 L13: -3.2439 L23: 3.1681 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: -0.0051 S13: -0.7742 REMARK 3 S21: 0.9117 S22: 0.3080 S23: -0.7008 REMARK 3 S31: 1.0773 S32: 1.3556 S33: -0.2603 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 56 A 71 REMARK 3 ORIGIN FOR THE GROUP (A): -52.2417 -0.4587 -0.6358 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1868 REMARK 3 T33: 0.1556 T12: 0.0208 REMARK 3 T13: 0.0244 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 4.4886 L22: 6.8818 REMARK 3 L33: 5.7393 L12: 0.4636 REMARK 3 L13: -2.0296 L23: -3.7387 REMARK 3 S TENSOR REMARK 3 S11: -0.1718 S12: 0.0785 S13: 0.1036 REMARK 3 S21: 0.1031 S22: 0.2162 S23: 0.5280 REMARK 3 S31: 0.0050 S32: -0.4640 S33: -0.0444 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 72 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): -40.7648 -3.8983 -3.6791 REMARK 3 T TENSOR REMARK 3 T11: 0.1588 T22: 0.1278 REMARK 3 T33: 0.1279 T12: -0.0020 REMARK 3 T13: 0.0135 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.4860 L22: 1.1750 REMARK 3 L33: 0.9442 L12: -0.2287 REMARK 3 L13: -0.1482 L23: -0.2311 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: -0.0032 S13: -0.0857 REMARK 3 S21: -0.0231 S22: 0.0613 S23: 0.0628 REMARK 3 S31: 0.0703 S32: -0.1299 S33: 0.0097 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): -26.7629 -12.1590 11.8406 REMARK 3 T TENSOR REMARK 3 T11: 0.1976 T22: 0.1564 REMARK 3 T33: 0.1528 T12: 0.0395 REMARK 3 T13: -0.0229 T23: -0.0149 REMARK 3 L TENSOR REMARK 3 L11: 5.4050 L22: 3.6229 REMARK 3 L33: 5.2906 L12: -1.5545 REMARK 3 L13: -1.6095 L23: -1.9292 REMARK 3 S TENSOR REMARK 3 S11: -0.1776 S12: -0.5614 S13: 0.2394 REMARK 3 S21: 0.5973 S22: 0.1758 S23: -0.2370 REMARK 3 S31: -0.2661 S32: 0.0104 S33: 0.0018 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): -34.7473 -18.2292 13.1566 REMARK 3 T TENSOR REMARK 3 T11: 0.4076 T22: 0.1905 REMARK 3 T33: 0.2356 T12: 0.0108 REMARK 3 T13: 0.0559 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 6.1357 L22: 2.4648 REMARK 3 L33: 10.3662 L12: -1.0049 REMARK 3 L13: 0.0030 L23: 3.5987 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.8365 S13: -0.0622 REMARK 3 S21: 0.6946 S22: 0.0451 S23: 0.1613 REMARK 3 S31: 0.1548 S32: -0.2849 S33: -0.0499 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 121 A 135 REMARK 3 ORIGIN FOR THE GROUP (A): -34.7983 -16.4164 -2.5392 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.1350 REMARK 3 T33: 0.2003 T12: 0.0054 REMARK 3 T13: 0.0849 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 4.8597 L22: 2.9716 REMARK 3 L33: 4.7467 L12: -2.7294 REMARK 3 L13: 4.5540 L23: -1.9300 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: 0.0653 S13: -0.1301 REMARK 3 S21: -0.2350 S22: -0.0483 S23: -0.0700 REMARK 3 S31: 0.1668 S32: 0.0550 S33: -0.0305 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 136 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): -37.8780 -7.0126 -13.7291 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.1498 REMARK 3 T33: 0.1556 T12: 0.0080 REMARK 3 T13: -0.0099 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 13.0849 L22: 8.1829 REMARK 3 L33: 13.8332 L12: 3.6343 REMARK 3 L13: -4.8748 L23: 2.3096 REMARK 3 S TENSOR REMARK 3 S11: -0.1628 S12: 0.5752 S13: -0.3786 REMARK 3 S21: -0.5690 S22: 0.0999 S23: -0.2505 REMARK 3 S31: 0.4127 S32: 0.3021 S33: 0.0629 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 141 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): -24.4841 -2.3032 -1.0353 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.1416 REMARK 3 T33: 0.2141 T12: 0.0035 REMARK 3 T13: 0.0082 T23: 0.0264 REMARK 3 L TENSOR REMARK 3 L11: 3.0928 L22: 3.7236 REMARK 3 L33: 4.2815 L12: -0.4659 REMARK 3 L13: 0.8488 L23: -0.7340 REMARK 3 S TENSOR REMARK 3 S11: -0.0674 S12: -0.0346 S13: 0.0399 REMARK 3 S21: 0.1779 S22: -0.0629 S23: -0.6375 REMARK 3 S31: -0.0922 S32: 0.5073 S33: 0.1303 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): -32.7904 8.9312 -11.9040 REMARK 3 T TENSOR REMARK 3 T11: 0.1655 T22: 0.1302 REMARK 3 T33: 0.1510 T12: -0.0252 REMARK 3 T13: 0.0247 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 4.8124 L22: 3.5871 REMARK 3 L33: 3.5590 L12: -0.7356 REMARK 3 L13: 1.7489 L23: -0.1907 REMARK 3 S TENSOR REMARK 3 S11: -0.0199 S12: 0.2767 S13: 0.0852 REMARK 3 S21: -0.2292 S22: -0.0504 S23: -0.1783 REMARK 3 S31: -0.0155 S32: 0.1302 S33: 0.0703 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3IIK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-09. REMARK 100 THE DEPOSITION ID IS D_1000054455. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX10.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04498 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 WITH SAGITTAL FOCUSSING REMARK 200 OPTICS : RH COATED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23444 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 85.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.44900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RKB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.5 M LI2SO4, 0.2 REMARK 280 M NACL, 0.5 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.21667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.43333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.82500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.04167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 9.60833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -7 REMARK 465 PRO A -6 REMARK 465 LEU A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 52 75.12 55.07 REMARK 500 HIS A 79 42.56 -89.54 REMARK 500 CYS A 81 -7.32 -153.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 173 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 174 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 175 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 176 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 177 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RKB RELATED DB: PDB REMARK 900 THE STRUCTURE OF ADRENAL GLAND PROTEIN AD-004 REMARK 900 RELATED ID: 3IIJ RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-ADP COMPLEX AT 1.76 ANGSTROMS RESOLUTION. REMARK 900 RELATED ID: 3IIL RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-MGADP-PI COMPLEX AT 2.0 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 3IIM RELATED DB: PDB REMARK 900 THE STRUCTURE OF HCINAP-DADP COMPLEX AT 2.0 ANGSTROMS RESOLUTION DBREF 3IIK A 1 172 UNP Q5F2S9 Q5F2S9_HUMAN 1 172 SEQADV 3IIK GLY A -7 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIK PRO A -6 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIK LEU A -5 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIK GLY A -4 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIK SER A -3 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIK PRO A -2 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIK GLU A -1 UNP Q5F2S9 EXPRESSION TAG SEQADV 3IIK PHE A 0 UNP Q5F2S9 EXPRESSION TAG SEQRES 1 A 180 GLY PRO LEU GLY SER PRO GLU PHE MET LEU LEU PRO ASN SEQRES 2 A 180 ILE LEU LEU THR GLY THR PRO GLY VAL GLY LYS THR THR SEQRES 3 A 180 LEU GLY LYS GLU LEU ALA SER LYS SER GLY LEU LYS TYR SEQRES 4 A 180 ILE ASN VAL GLY ASP LEU ALA ARG GLU GLU GLN LEU TYR SEQRES 5 A 180 ASP GLY TYR ASP GLU GLU TYR ASP CYS PRO ILE LEU ASP SEQRES 6 A 180 GLU ASP ARG VAL VAL ASP GLU LEU ASP ASN GLN MET ARG SEQRES 7 A 180 GLU GLY GLY VAL ILE VAL ASP TYR HIS GLY CYS ASP PHE SEQRES 8 A 180 PHE PRO GLU ARG TRP PHE HIS ILE VAL PHE VAL LEU ARG SEQRES 9 A 180 THR ASP THR ASN VAL LEU TYR GLU ARG LEU GLU THR ARG SEQRES 10 A 180 GLY TYR ASN GLU LYS LYS LEU THR ASP ASN ILE GLN CYS SEQRES 11 A 180 GLU ILE PHE GLN VAL LEU TYR GLU GLU ALA THR ALA SER SEQRES 12 A 180 TYR LYS GLU GLU ILE VAL HIS GLN LEU PRO SER ASN LYS SEQRES 13 A 180 PRO GLU GLU LEU GLU ASN ASN VAL ASP GLN ILE LEU LYS SEQRES 14 A 180 TRP ILE GLU GLN TRP ILE LYS ASP HIS ASN SER HET SO4 A 173 5 HET SO4 A 174 5 HET SO4 A 175 5 HET SO4 A 176 5 HET SO4 A 177 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 HOH *199(H2 O) HELIX 1 1 GLY A 15 GLY A 28 1 14 HELIX 2 2 VAL A 34 GLN A 42 1 9 HELIX 3 3 ASP A 57 GLY A 72 1 16 HELIX 4 4 PRO A 85 PHE A 89 5 5 HELIX 5 5 ASP A 98 ARG A 109 1 12 HELIX 6 6 ASN A 112 PHE A 125 1 14 HELIX 7 7 GLN A 126 TYR A 136 1 11 HELIX 8 8 LYS A 137 GLU A 139 5 3 HELIX 9 9 LYS A 148 HIS A 170 1 23 SHEET 1 A 5 LYS A 30 ASN A 33 0 SHEET 2 A 5 VAL A 74 ASP A 77 1 O ILE A 75 N ILE A 32 SHEET 3 A 5 ILE A 6 THR A 9 1 N LEU A 8 O VAL A 76 SHEET 4 A 5 ILE A 91 ARG A 96 1 O PHE A 93 N LEU A 7 SHEET 5 A 5 VAL A 141 PRO A 145 1 O LEU A 144 N ARG A 96 SHEET 1 B 2 TYR A 44 ASP A 48 0 SHEET 2 B 2 CYS A 53 LEU A 56 -1 O ILE A 55 N GLY A 46 SITE 1 AC1 10 PRO A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC1 10 LYS A 16 THR A 17 ARG A 109 HOH A 208 SITE 3 AC1 10 HOH A 212 HOH A 218 SITE 1 AC2 6 GLY A 35 ARG A 39 HIS A 79 HOH A 204 SITE 2 AC2 6 HOH A 207 HOH A 231 SITE 1 AC3 6 TYR A 129 VAL A 141 HIS A 142 GLN A 143 SITE 2 AC3 6 HOH A 340 HOH A 341 SITE 1 AC4 6 LYS A 137 GLU A 138 GLU A 139 HOH A 249 SITE 2 AC4 6 HOH A 299 HOH A 342 SITE 1 AC5 5 ARG A 105 ASN A 147 LYS A 148 PRO A 149 SITE 2 AC5 5 HOH A 363 CRYST1 98.670 98.670 57.650 90.00 90.00 120.00 P 61 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010135 0.005851 0.000000 0.00000 SCALE2 0.000000 0.011703 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017346 0.00000