PDB Short entry for 3J1R HEADER CELL ADHESION, STRUCTURAL PROTEIN 18-MAY-12 3J1R TITLE FILAMENTS FROM IGNICOCCUS HOSPITALIS SHOW DIVERSITY OF PACKING IN TITLE 2 PROTEINS CONTAINING N-TERMINAL TYPE IV PILIN HELICES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAEAL ADHESION FILAMENT CORE; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U; COMPND 4 FRAGMENT: SEE REMARK 999 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: IGNICOCCUS HOSPITALIS; SOURCE 3 ORGANISM_TAXID: 160233 KEYWDS HELICAL POLYMER, FLAGELLAR FILAMENT, CELL ADHESION, STRUCTURAL KEYWDS 2 PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.YU,C.GOFORTH,C.MEYER,R.RACHEL,R.WIRTH,G.F.SCHROEDER,E.H.EGELMAN REVDAT 3 18-JUL-18 3J1R 1 REMARK REVDAT 2 29-AUG-12 3J1R 1 JRNL REVDAT 1 20-JUN-12 3J1R 0 JRNL AUTH X.YU,C.GOFORTH,C.MEYER,R.RACHEL,R.WIRTH,G.F.SCHRODER, JRNL AUTH 2 E.H.EGELMAN JRNL TITL FILAMENTS FROM IGNICOCCUS HOSPITALIS SHOW DIVERSITY OF JRNL TITL 2 PACKING IN PROTEINS CONTAINING N-TERMINAL TYPE IV PILIN JRNL TITL 3 HELICES. JRNL REF J.MOL.BIOL. V. 422 274 2012 JRNL REFN ISSN 0022-2836 JRNL PMID 22659006 JRNL DOI 10.1016/J.JMB.2012.05.031 REMARK 2 REMARK 2 RESOLUTION. 7.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : IHRSR, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 1.250 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.500 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: TMV REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 3J1R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000160141. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : ADHESION FILAMENT REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 01-JAN-11 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1700.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3400.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : NULL REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 55000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR HELICAL REMARK 300 SYMMETRY WITH THE FOLLOWING PARAMETERS: ROTATION PER SUBUNIT (TWIST) REMARK 300 = 106.65 DEGREES; RISE PER SUBUNIT (HEIGHT) = 5.3 ANGSTROM REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 21-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L, M, N, O, P, Q, R, S, REMARK 350 AND CHAINS: T, U REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5423 RELATED DB: EMDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THOUGH THE FULL PROTEIN (UNP RESIDUES 1-310) WAS PRESENT, ONLY REMARK 999 RESIDUES 8-33 WERE MODELED. DBREF 3J1R A 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R B 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R C 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R D 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R E 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R F 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R G 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R H 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R I 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R J 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R K 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R L 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R M 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R N 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R O 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R P 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R Q 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R R 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R S 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R T 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 DBREF 3J1R U 8 33 UNP A8AAA0 A8AAA0_IGNH4 8 33 SEQRES 1 A 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 A 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 B 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 B 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 C 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 C 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 D 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 D 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 E 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 E 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 F 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 F 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 G 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 G 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 H 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 H 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 I 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 I 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 J 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 J 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 K 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 K 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 L 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 L 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 M 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 M 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 N 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 N 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 O 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 O 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 P 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 P 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 Q 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 Q 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 R 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 R 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 S 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 S 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 T 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 T 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER SEQRES 1 U 26 VAL SER PRO VAL ILE ALA THR LEU LEU LEU ILE LEU ILE SEQRES 2 U 26 ALA VAL ALA ALA ALA VAL LEU LEU TYR THR TRP VAL SER HELIX 1 1 SER A 9 SER A 33 1 25 HELIX 2 2 SER B 9 SER B 33 1 25 HELIX 3 3 SER C 9 SER C 33 1 25 HELIX 4 4 SER D 9 SER D 33 1 25 HELIX 5 5 SER E 9 SER E 33 1 25 HELIX 6 6 SER F 9 SER F 33 1 25 HELIX 7 7 SER G 9 SER G 33 1 25 HELIX 8 8 SER H 9 SER H 33 1 25 HELIX 9 9 SER I 9 SER I 33 1 25 HELIX 10 10 SER J 9 SER J 33 1 25 HELIX 11 11 SER K 9 SER K 33 1 25 HELIX 12 12 SER L 9 SER L 33 1 25 HELIX 13 13 SER M 9 SER M 33 1 25 HELIX 14 14 SER N 9 SER N 33 1 25 HELIX 15 15 SER O 9 SER O 33 1 25 HELIX 16 16 SER P 9 SER P 33 1 25 HELIX 17 17 SER Q 9 SER Q 33 1 25 HELIX 18 18 SER R 9 SER R 33 1 25 HELIX 19 19 SER S 9 SER S 33 1 25 HELIX 20 20 SER T 9 SER T 33 1 25 HELIX 21 21 SER U 9 SER U 33 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000