PDB Short entry for 3J46 HEADER RIBOSOME/PROTEIN TRANSPORT 18-JUN-13 3J46 TITLE STRUCTURE OF THE SECY PROTEIN TRANSLOCATION CHANNEL IN ACTION CAVEAT 3J46 SOME RESIDUES IN THIS ENTRY ARE NOT PROPERLY LINKED. SEVERAL CAVEAT 2 3J46 AMINO ACID RESIDUES IN THIS ENTRY HAVE INCORRECT CAVEAT 3 3J46 STEREOCHEMISTRY AT THEIR CA CHIRAL CENTERS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TRANSLOCASE SUBUNIT SECY; COMPND 3 CHAIN: y; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECE; COMPND 8 CHAIN: E; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: PROTEIN-EXPORT MEMBRANE PROTEIN SECG; COMPND 12 CHAIN: G; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: NC100; COMPND 16 CHAIN: n; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 5; COMPND 19 MOLECULE: P-TRNA; COMPND 20 CHAIN: p; COMPND 21 MOL_ID: 6; COMPND 22 MOLECULE: A-TRNA; COMPND 23 CHAIN: a; COMPND 24 MOL_ID: 7; COMPND 25 MOLECULE: 50S RIBOSOMAL PROTEIN L1; COMPND 26 CHAIN: 5; COMPND 27 MOL_ID: 8; COMPND 28 MOLECULE: 50S RIBOSOMAL PROTEIN L23P; COMPND 29 CHAIN: T; COMPND 30 MOL_ID: 9; COMPND 31 MOLECULE: 50S RIBOSOMAL PROTEIN L24P; COMPND 32 CHAIN: U; COMPND 33 MOL_ID: 10; COMPND 34 MOLECULE: 50S RIBOSOMAL PROTEIN L29P; COMPND 35 CHAIN: Y; COMPND 36 MOL_ID: 11; COMPND 37 MOLECULE: 23S RIBOSOMAL RNA; COMPND 38 CHAIN: 1; COMPND 39 FRAGMENT: HELIX 6 - HELIX 7; COMPND 40 MOL_ID: 12; COMPND 41 MOLECULE: 23S RIBOSOMAL RNA; COMPND 42 CHAIN: 2; COMPND 43 FRAGMENT: HELIX 50; COMPND 44 MOL_ID: 13; COMPND 45 MOLECULE: 23S RIBOSOMAL RNA; COMPND 46 CHAIN: 3; COMPND 47 FRAGMENT: HELIX 59; COMPND 48 MOL_ID: 14; COMPND 49 MOLECULE: 23S RIBOSOMAL RNA; COMPND 50 CHAIN: 4; COMPND 51 FRAGMENT: HELIX 76 - HELIX 78 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: EP72; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD(MAZF)-NC100; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: EP72; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PBAD(MAZF)-NC100; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 19 ORGANISM_TAXID: 562; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: EP72; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PBAD(MAZF)-NC100; SOURCE 25 MOL_ID: 4; SOURCE 26 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 27 ORGANISM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 30 EXPRESSION_SYSTEM_STRAIN: EP72; SOURCE 31 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 32 EXPRESSION_SYSTEM_PLASMID: PBAD(MAZF)-NC100; SOURCE 33 MOL_ID: 5; SOURCE 34 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 35 ORGANISM_TAXID: 562; SOURCE 36 MOL_ID: 6; SOURCE 37 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 38 ORGANISM_TAXID: 562; SOURCE 39 MOL_ID: 7; SOURCE 40 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 41 ORGANISM_TAXID: 562; SOURCE 42 MOL_ID: 8; SOURCE 43 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 44 ORGANISM_TAXID: 562; SOURCE 45 MOL_ID: 9; SOURCE 46 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 47 ORGANISM_TAXID: 562; SOURCE 48 MOL_ID: 10; SOURCE 49 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 50 ORGANISM_TAXID: 562; SOURCE 51 MOL_ID: 11; SOURCE 52 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 53 ORGANISM_TAXID: 562; SOURCE 54 MOL_ID: 12; SOURCE 55 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 56 ORGANISM_TAXID: 562; SOURCE 57 MOL_ID: 13; SOURCE 58 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 59 ORGANISM_TAXID: 562; SOURCE 60 MOL_ID: 14; SOURCE 61 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 62 ORGANISM_TAXID: 562 KEYWDS 70S, PREPROTEIN TRANSLOCASE, SECYEG, PROTEIN TRANSLOCATION CHANNEL, KEYWDS 2 NASCENT CHAIN, RIBOSOME-PROTEIN TRANSPORT COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR C.W.AKEY,E.PARK,J.F.MENETRET,J.C.GUMBART,S.J.LUDTKE,W.LI,A.WHYNOT, AUTHOR 2 T.A.RAPOPORT REVDAT 5 03-JUL-19 3J46 1 COMPND FORMUL LINK REVDAT 4 18-JUL-18 3J46 1 REMARK REVDAT 3 05-FEB-14 3J46 1 JRNL REVDAT 2 06-NOV-13 3J46 1 JRNL REVDAT 1 23-OCT-13 3J46 0 JRNL AUTH E.PARK,J.F.MENETRET,J.C.GUMBART,S.J.LUDTKE,W.LI,A.WHYNOT, JRNL AUTH 2 T.A.RAPOPORT,C.W.AKEY JRNL TITL STRUCTURE OF THE SECY CHANNEL DURING INITIATION OF PROTEIN JRNL TITL 2 TRANSLOCATION. JRNL REF NATURE V. 506 102 2013 JRNL REFN ISSN 0028-0836 JRNL PMID 24153188 JRNL DOI 10.1038/NATURE12720 REMARK 2 REMARK 2 RESOLUTION. 10.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : MDFF, UCSF CHIMERA, EMAN REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 2I2P REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : REFINEMENT PROTOCOL--FLEXIBLE REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 2.120 REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 10.10 REMARK 3 NUMBER OF PARTICLES : 53000 REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: THE STRUCTURE WAS SOLVED TWICE: FIRST WITH A MODEL REMARK 3 STARTING FROM A 25-ANGSTROM FILTERED E. COLI RIBOSOME MAP REMARK 3 GENERATED IN HOUSE, AND THEN A SECOND TIME USING A FILTERED REMARK 3 RIBOSOME MODEL (EMD-5036). IN EACH CASE, AFTER CONVERGENCE, MAPS REMARK 3 FROM TWO EMAN2 REFINEMENTS WITH DIFFERENT PARAMETERS WERE REMARK 3 AVERAGED AFTER ALIGNMENT IN CHIMERA. FOUR MAPS IN TOTAL WERE REMARK 3 AVERAGED TO REDUCE THE NOISE. RESOLUTION METHOD WAS FSC AT 0.5 REMARK 3 CUT-OFF FOR A COMPARISON BETWEEN THE FULL EXPERIMENTAL 3D REMARK 3 DENSITY MAP AND A CALCULATED MAP OF THE DOCKED E. COLI RIBOSOME REMARK 3 MODEL (THIS MAP WAS CALCULATED TO 7 ANGSTROM RESOLUTION WITH REMARK 3 EMAN). REMARK 4 REMARK 4 3J46 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000160228. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : ACTIVE RIBOSOME-NASCENT CHAIN REMARK 245 -SECYEG COMPLEX; 70S RIBOSOME; REMARK 245 SECYEG CHANNEL; NC100- NASCENT REMARK 245 CHAIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 8.00 REMARK 245 SAMPLE SUPPORT DETAILS : 400 MESH QUANTIFOIL HOLEY GRIDS REMARK 245 WITH 2/1 OR 1.2/1.2 REMARK 245 SAMPLE VITRIFICATION DETAILS : BLOT 1-2 SECONDS BEFORE REMARK 245 PLUNGING INTO LIQUID ETHANE REMARK 245 (FEI VITROBOT MARK III). REMARK 245 SAMPLE BUFFER : 50 MM TRIS-ACETATE, 10 MM REMARK 245 MG(OAC)2, 80 MM KOAC, 0.06% DDM REMARK 245 PH : 7.20 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : 10-FEB-12 REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : 94.00 REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 20.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 42000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 160 REMARK 245 IMAGING DETAILS : LOW DOSE IMAGING: AUTOMATED REMARK 245 SINGLE PARTICLE DATA COLLECTION PROGRAM FROM TVIPS WAS USED. REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRADECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: y, E, G, n, p, a, 5, T, U, Y, REMARK 350 AND CHAINS: 1, 2, 3, 4 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG y 256 O2 U 1 92 0.53 REMARK 500 CB ILE y 356 OE2 GLU T 18 0.56 REMARK 500 OE2 GLU E 78 CD2 LEU T 93 0.98 REMARK 500 CG1 ILE y 356 CD GLU T 18 1.02 REMARK 500 CG1 ILE y 356 OE2 GLU T 18 1.11 REMARK 500 CD1 ILE y 356 CA GLU T 18 1.16 REMARK 500 NH2 ARG y 242 OE1 GLN Y 36 1.44 REMARK 500 OH TYR y 365 OG1 THR T 22 1.53 REMARK 500 CG1 ILE y 356 OE1 GLU T 18 1.67 REMARK 500 C ARG y 256 O2 U 1 92 1.68 REMARK 500 C GLY y 355 CG GLU T 18 1.69 REMARK 500 CD1 ILE y 356 N GLU T 18 1.72 REMARK 500 CD1 ILE y 356 CB GLU T 18 1.74 REMARK 500 O ARG y 256 C2 U 1 92 1.75 REMARK 500 CA ILE y 356 OE2 GLU T 18 1.76 REMARK 500 CB ILE y 356 CD GLU T 18 1.76 REMARK 500 O GLY y 355 CG GLU T 18 1.85 REMARK 500 OE2 GLU E 78 CG LEU T 93 1.90 REMARK 500 CB ALA y 418 O ARG n 41 1.91 REMARK 500 CB GLN y 253 N6 A 1 91 1.93 REMARK 500 CD LYS E 81 CD1 LEU T 93 1.94 REMARK 500 CB LEU y 52 CB GLU n 29 1.95 REMARK 500 CD1 ILE y 356 CD GLU T 18 1.96 REMARK 500 NH2 ARG y 242 CD GLN Y 36 1.96 REMARK 500 N ILE y 356 CG GLU T 18 1.99 REMARK 500 CG2 ILE y 356 OE2 GLU T 18 2.00 REMARK 500 NE1 TRP y 293 CD2 TYR n 22 2.02 REMARK 500 CZ TYR y 365 OG1 THR T 22 2.06 REMARK 500 CG1 VAL n 73 O2' A 2 1322 2.07 REMARK 500 N ILE y 356 CD GLU T 18 2.10 REMARK 500 CD1 ILE y 356 CG GLU T 18 2.10 REMARK 500 CZ2 TRP y 293 CD2 TYR n 22 2.12 REMARK 500 CE2 TRP y 293 CD2 TYR n 22 2.12 REMARK 500 CD1 PHE n 85 CG2 THR n 87 2.13 REMARK 500 NZ LYS E 81 CD1 LEU T 93 2.13 REMARK 500 C GLY n 100 O3' A p 76 2.13 REMARK 500 NH1 ARG n 32 ND1 HIS n 34 2.16 REMARK 500 CZ ARG y 242 OE1 GLN Y 36 2.16 REMARK 500 CG GLU n 23 O GLU n 29 2.16 REMARK 500 CB GLN y 253 C6 A 1 91 2.19 REMARK 500 CD GLU E 78 CD2 LEU T 93 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER y 37 CA SER y 37 CB 0.092 REMARK 500 ARG y 74 CD ARG y 74 NE 0.112 REMARK 500 TYR y 157 CG TYR y 157 CD1 0.088 REMARK 500 ARG y 181 NE ARG y 181 CZ 0.092 REMARK 500 PHE y 233 CG PHE y 233 CD1 0.092 REMARK 500 ARG y 242 CD ARG y 242 NE 0.102 REMARK 500 GLY y 350 CA GLY y 350 C -0.097 REMARK 500 GLU y 360 CB GLU y 360 CG 0.115 REMARK 500 ARG y 372 NE ARG y 372 CZ 0.087 REMARK 500 TYR y 400 CZ TYR y 400 OH 0.107 REMARK 500 LEU G 19 N LEU G 19 CA -0.122 REMARK 500 G p 1 N1 G p 1 C2 0.062 REMARK 500 G p 1 C8 G p 1 N9 0.044 REMARK 500 G p 1 N9 G p 1 C4 0.081 REMARK 500 G p 1 C2 G p 1 N2 0.083 REMARK 500 C p 2 C5' C p 2 C4' 0.090 REMARK 500 C p 2 C1' C p 2 N1 0.097 REMARK 500 G p 3 C4' G p 3 C3' 0.077 REMARK 500 G p 3 C2 G p 3 N3 0.053 REMARK 500 G p 3 C5 G p 3 C6 0.068 REMARK 500 G p 3 C5 G p 3 N7 -0.049 REMARK 500 G p 3 N9 G p 3 C4 0.049 REMARK 500 G p 5 C6 G p 5 N1 0.083 REMARK 500 G p 5 C5 G p 5 N7 -0.056 REMARK 500 A p 6 C5 A p 6 N7 -0.072 REMARK 500 A p 7 C6 A p 7 N1 0.062 REMARK 500 A p 7 C5 A p 7 N7 -0.037 REMARK 500 A p 7 C8 A p 7 N9 -0.055 REMARK 500 A p 7 C6 A p 7 N6 0.088 REMARK 500 A p 9 C4' A p 9 C3' 0.089 REMARK 500 A p 9 C5 A p 9 N7 -0.049 REMARK 500 A p 9 N9 A p 9 C4 0.050 REMARK 500 G p 10 C2' G p 10 C1' -0.049 REMARK 500 G p 10 N1 G p 10 C2 0.064 REMARK 500 G p 10 C2 G p 10 N3 0.049 REMARK 500 G p 10 C6 G p 10 N1 0.049 REMARK 500 G p 10 C5 G p 10 N7 -0.056 REMARK 500 C p 11 O4' C p 11 C1' 0.075 REMARK 500 C p 11 N3 C p 11 C4 0.089 REMARK 500 U p 12 C2 U p 12 N3 0.056 REMARK 500 C p 13 C4 C p 13 N4 0.091 REMARK 500 C p 13 C4 C p 13 C5 0.062 REMARK 500 G p 15 C2' G p 15 C1' -0.049 REMARK 500 G p 15 N1 G p 15 C2 0.059 REMARK 500 G p 15 N3 G p 15 C4 0.055 REMARK 500 G p 15 C6 G p 15 N1 0.080 REMARK 500 G p 15 C5 G p 15 N7 -0.063 REMARK 500 G p 15 C8 G p 15 N9 -0.060 REMARK 500 G p 15 C2 G p 15 N2 0.061 REMARK 500 U p 16 C3' U p 16 C2' 0.071 REMARK 500 REMARK 500 THIS ENTRY HAS 512 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP y 8 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG y 22 NH1 - CZ - NH2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG y 22 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG y 22 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 PHE y 25 CB - CG - CD1 ANGL. DEV. = -6.5 DEGREES REMARK 500 PRO y 40 C - N - CA ANGL. DEV. = 11.9 DEGREES REMARK 500 PRO y 40 N - CD - CG ANGL. DEV. = 9.0 DEGREES REMARK 500 ASP y 45 N - CA - CB ANGL. DEV. = 12.2 DEGREES REMARK 500 ALA y 47 CB - CA - C ANGL. DEV. = -10.3 DEGREES REMARK 500 ALA y 47 N - CA - CB ANGL. DEV. = 9.7 DEGREES REMARK 500 GLN y 55 N - CA - C ANGL. DEV. = 25.2 DEGREES REMARK 500 GLN y 56 N - CA - CB ANGL. DEV. = 34.0 DEGREES REMARK 500 ARG y 57 NE - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 PHE y 64 CB - CG - CD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 PHE y 67 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 CYS y 68 CA - CB - SG ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG y 113 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG y 113 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR y 119 CB - CG - CD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 TYR y 119 CB - CG - CD1 ANGL. DEV. = 9.5 DEGREES REMARK 500 PRO y 152 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 THR y 166 N - CA - CB ANGL. DEV. = 11.8 DEGREES REMARK 500 THR y 168 CA - CB - CG2 ANGL. DEV. = 8.6 DEGREES REMARK 500 PHE y 233 CB - CG - CD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 PHE y 233 CB - CG - CD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 PHE y 236 CG - CD1 - CE1 ANGL. DEV. = -7.2 DEGREES REMARK 500 GLU y 238 N - CA - CB ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG y 242 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG y 242 NE - CZ - NH2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG y 243 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 TYR y 248 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG y 251 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG y 255 N - CA - CB ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG y 255 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG y 256 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ALA y 272 CB - CA - C ANGL. DEV. = -9.2 DEGREES REMARK 500 PHE y 294 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 THR y 298 N - CA - CB ANGL. DEV. = 13.1 DEGREES REMARK 500 TRP y 300 CB - CG - CD2 ANGL. DEV. = 9.5 DEGREES REMARK 500 TRP y 300 CB - CG - CD1 ANGL. DEV. = -8.5 DEGREES REMARK 500 LEU y 316 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 PHE y 327 CB - CG - CD2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG y 340 NH1 - CZ - NH2 ANGL. DEV. = -7.0 DEGREES REMARK 500 ARG y 340 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 PHE y 352 CB - CG - CD1 ANGL. DEV. = -4.9 DEGREES REMARK 500 TYR y 365 CB - CG - CD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 TYR y 365 CB - CG - CD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP y 367 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 TYR y 380 CG - CD2 - CE2 ANGL. DEV. = 5.5 DEGREES REMARK 500 PHE y 390 CB - CG - CD2 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 1253 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO y 40 -179.79 -50.86 REMARK 500 ILE y 44 -60.55 -130.45 REMARK 500 ASP y 45 95.14 126.45 REMARK 500 GLN y 55 -63.05 -23.67 REMARK 500 GLN y 56 -87.64 175.82 REMARK 500 ARG y 57 -12.42 63.79 REMARK 500 LEU y 72 38.78 -142.44 REMARK 500 ALA y 75 35.64 -151.72 REMARK 500 PHE y 78 -150.43 43.31 REMARK 500 ALA y 79 10.70 -163.65 REMARK 500 LEU y 148 7.35 -173.89 REMARK 500 ASN y 185 -48.26 -27.01 REMARK 500 ALA y 210 -153.05 38.71 REMARK 500 GLN y 212 -1.48 -173.46 REMARK 500 ASP y 214 -163.98 -124.87 REMARK 500 ALA y 249 -162.96 51.92 REMARK 500 ARG y 251 48.89 70.59 REMARK 500 GLN y 252 -162.51 64.41 REMARK 500 ARG y 255 111.57 88.07 REMARK 500 ARG y 256 -103.67 70.29 REMARK 500 TYR y 258 127.02 162.43 REMARK 500 THR y 298 97.90 108.50 REMARK 500 TRP y 300 64.97 -101.40 REMARK 500 PRO y 315 -134.16 21.24 REMARK 500 LEU y 316 145.70 -9.59 REMARK 500 LYS y 396 152.34 142.71 REMARK 500 PHE y 399 7.19 -171.97 REMARK 500 TYR y 400 -2.24 -167.15 REMARK 500 LEU y 438 98.67 101.21 REMARK 500 LYS y 439 119.77 167.36 REMARK 500 GLN E 88 -153.37 -143.86 REMARK 500 THR E 90 154.97 -38.55 REMARK 500 LEU E 91 68.63 -111.47 REMARK 500 PHE G 34 147.93 117.96 REMARK 500 ALA G 38 -50.46 166.94 REMARK 500 SER G 39 -18.35 -160.22 REMARK 500 SER G 45 -25.90 -165.96 REMARK 500 ASN G 72 117.32 -37.27 REMARK 500 SER n 16 8.56 -179.58 REMARK 500 SER n 18 -165.84 71.22 REMARK 500 ALA n 20 38.57 -143.12 REMARK 500 ASP n 24 -177.52 137.14 REMARK 500 SER n 26 82.11 170.39 REMARK 500 SER n 27 -5.40 163.24 REMARK 500 GLU n 29 121.35 107.00 REMARK 500 LEU n 30 168.17 -40.02 REMARK 500 ARG n 32 -128.82 -113.62 REMARK 500 GLN n 33 -10.74 179.50 REMARK 500 HIS n 34 167.66 69.09 REMARK 500 THR n 35 -137.73 -89.05 REMARK 500 REMARK 500 THIS ENTRY HAS 155 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU y 265 PRO y 266 137.08 REMARK 500 THR G 41 LEU G 42 149.49 REMARK 500 VAL U 48 PRO U 49 -110.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG y 22 0.09 SIDE CHAIN REMARK 500 ARG y 34 0.09 SIDE CHAIN REMARK 500 PHE y 38 0.07 SIDE CHAIN REMARK 500 ASP y 45 0.07 SIDE CHAIN REMARK 500 ARG y 57 0.10 SIDE CHAIN REMARK 500 PHE y 67 0.11 SIDE CHAIN REMARK 500 TYR y 85 0.15 SIDE CHAIN REMARK 500 PHE y 232 0.11 SIDE CHAIN REMARK 500 ARG y 243 0.10 SIDE CHAIN REMARK 500 TYR y 248 0.07 SIDE CHAIN REMARK 500 TYR y 309 0.10 SIDE CHAIN REMARK 500 TYR y 321 0.07 SIDE CHAIN REMARK 500 TYR y 332 0.08 SIDE CHAIN REMARK 500 ARG y 357 0.10 SIDE CHAIN REMARK 500 TYR y 365 0.07 SIDE CHAIN REMARK 500 ARG E 87 0.08 SIDE CHAIN REMARK 500 G p 1 0.09 SIDE CHAIN REMARK 500 G p 3 0.14 SIDE CHAIN REMARK 500 C p 13 0.08 SIDE CHAIN REMARK 500 G p 24 0.08 SIDE CHAIN REMARK 500 A p 26 0.07 SIDE CHAIN REMARK 500 C p 27 0.09 SIDE CHAIN REMARK 500 G p 28 0.10 SIDE CHAIN REMARK 500 A p 29 0.07 SIDE CHAIN REMARK 500 C p 31 0.12 SIDE CHAIN REMARK 500 U p 33 0.10 SIDE CHAIN REMARK 500 G p 34 0.10 SIDE CHAIN REMARK 500 C p 36 0.07 SIDE CHAIN REMARK 500 A p 38 0.06 SIDE CHAIN REMARK 500 G p 39 0.12 SIDE CHAIN REMARK 500 G p 40 0.10 SIDE CHAIN REMARK 500 U p 41 0.09 SIDE CHAIN REMARK 500 G p 44 0.05 SIDE CHAIN REMARK 500 G p 45 0.10 SIDE CHAIN REMARK 500 C p 48 0.09 SIDE CHAIN REMARK 500 G p 49 0.10 SIDE CHAIN REMARK 500 G p 53 0.10 SIDE CHAIN REMARK 500 U p 55 0.12 SIDE CHAIN REMARK 500 A p 58 0.14 SIDE CHAIN REMARK 500 C p 63 0.08 SIDE CHAIN REMARK 500 U p 65 0.10 SIDE CHAIN REMARK 500 C p 69 0.07 SIDE CHAIN REMARK 500 C p 70 0.08 SIDE CHAIN REMARK 500 C p 74 0.12 SIDE CHAIN REMARK 500 A p 76 0.07 SIDE CHAIN REMARK 500 U a 66 0.07 SIDE CHAIN REMARK 500 ARG 5 122 0.08 SIDE CHAIN REMARK 500 TYR 5 163 0.08 SIDE CHAIN REMARK 500 TYR 5 208 0.07 SIDE CHAIN REMARK 500 G 1 60 0.09 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 135 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO y 266 -11.51 REMARK 500 MET y 424 15.74 REMARK 500 THR E 93 10.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-5693 RELATED DB: EMDB REMARK 900 MAP OF ACTIVE RIBOSOME WITH A NASCENT CHAIN INSERTED INTO THE OPEN REMARK 900 SECYEG CHANNEL REMARK 900 RELATED ID: 2I2P RELATED DB: PDB REMARK 900 DOCKED INTO THE 30S SMALL RIBOSOMAL SUBUNIT REMARK 900 RELATED ID: 3J01 RELATED DB: PDB REMARK 900 DOCKED INTO THE 50S LARGE RIBOSOMAL SUBUNIT REMARK 900 RELATED ID: 3I8G RELATED DB: PDB REMARK 900 CHAINS B AND C ARE THE A- AND P-SITE T-RNAS DOCKED INTO THE MAP REMARK 900 RELATED ID: EMD-5692 RELATED DB: EMDB REMARK 900 EM MAP OF CLOSED SECYEG CHANNEL BOUND TO THE NON-TRANSLOCATING 70S REMARK 900 RIBOSOME. REMARK 900 RELATED ID: 3J45 RELATED DB: PDB REMARK 900 MODEL FOR CLOSED SECYEG DBREF 3J46 y 6 440 UNP P0AGA2 SECY_ECOLI 6 440 DBREF 3J46 E 74 127 UNP P0AG96 SECE_ECOLI 74 127 DBREF 3J46 G 9 73 UNP P0AG99 SECG_ECOLI 9 73 DBREF 3J46 5 1 234 UNP P0A7L0 RL1_ECOLI 1 234 DBREF 3J46 T 1 100 UNP P0ADZ0 RL23_ECOLI 1 100 DBREF 3J46 U 1 103 UNP P60624 RL24_ECOLI 2 104 DBREF 3J46 Y 1 63 UNP P0A7M6 RL29_ECOLI 1 63 DBREF 3J46 n 0 100 PDB 3J46 3J46 0 100 DBREF 3J46 p 1 76 PDB 3J46 3J46 1 76 DBREF 3J46 a 1 76 PDB 3J46 3J46 1 76 DBREF 3J46 1 52 114 PDB 3J46 3J46 52 114 DBREF 3J46 2 1307 1342 PDB 3J46 3J46 1307 1342 DBREF 3J46 3 1515 1558 PDB 3J46 3J46 1515 1558 DBREF 3J46 4 2091 2199 PDB 3J46 3J46 2091 2199 SEQADV 3J46 ACE y 5 UNP P0AGA2 ACETYLATION SEQADV 3J46 CYS y 68 UNP P0AGA2 SER 68 ENGINEERED MUTATION SEQADV 3J46 NH2 y 441 UNP P0AGA2 AMIDATION SEQADV 3J46 ACE E 73 UNP P0AG96 ACETYLATION SEQADV 3J46 NH2 E 128 UNP P0AG96 AMIDATION SEQADV 3J46 ACE G 8 UNP P0AG99 ACETYLATION SEQADV 3J46 NH2 G 74 UNP P0AG99 AMIDATION SEQRES 1 y 437 ACE GLY LEU ASP PHE GLN SER ALA LYS GLY GLY LEU GLY SEQRES 2 y 437 GLU LEU LYS ARG ARG LEU LEU PHE VAL ILE GLY ALA LEU SEQRES 3 y 437 ILE VAL PHE ARG ILE GLY SER PHE ILE PRO ILE PRO GLY SEQRES 4 y 437 ILE ASP ALA ALA VAL LEU ALA LYS LEU LEU GLU GLN GLN SEQRES 5 y 437 ARG GLY THR ILE ILE GLU MET PHE ASN MET PHE CYS GLY SEQRES 6 y 437 GLY ALA LEU SER ARG ALA SER ILE PHE ALA LEU GLY ILE SEQRES 7 y 437 MET PRO TYR ILE SER ALA SER ILE ILE ILE GLN LEU LEU SEQRES 8 y 437 THR VAL VAL HIS PRO THR LEU ALA GLU ILE LYS LYS GLU SEQRES 9 y 437 GLY GLU SER GLY ARG ARG LYS ILE SER GLN TYR THR ARG SEQRES 10 y 437 TYR GLY THR LEU VAL LEU ALA ILE PHE GLN SER ILE GLY SEQRES 11 y 437 ILE ALA THR GLY LEU PRO ASN MET PRO GLY MET GLN GLY SEQRES 12 y 437 LEU VAL ILE ASN PRO GLY PHE ALA PHE TYR PHE THR ALA SEQRES 13 y 437 VAL VAL SER LEU VAL THR GLY THR MET PHE LEU MET TRP SEQRES 14 y 437 LEU GLY GLU GLN ILE THR GLU ARG GLY ILE GLY ASN GLY SEQRES 15 y 437 ILE SER ILE ILE ILE PHE ALA GLY ILE VAL ALA GLY LEU SEQRES 16 y 437 PRO PRO ALA ILE ALA HIS THR ILE GLU GLN ALA ARG GLN SEQRES 17 y 437 GLY ASP LEU HIS PHE LEU VAL LEU LEU LEU VAL ALA VAL SEQRES 18 y 437 LEU VAL PHE ALA VAL THR PHE PHE VAL VAL PHE VAL GLU SEQRES 19 y 437 ARG GLY GLN ARG ARG ILE VAL VAL ASN TYR ALA LYS ARG SEQRES 20 y 437 GLN GLN GLY ARG ARG VAL TYR ALA ALA GLN SER THR HIS SEQRES 21 y 437 LEU PRO LEU LYS VAL ASN MET ALA GLY VAL ILE PRO ALA SEQRES 22 y 437 ILE PHE ALA SER SER ILE ILE LEU PHE PRO ALA THR ILE SEQRES 23 y 437 ALA SER TRP PHE GLY GLY GLY THR GLY TRP ASN TRP LEU SEQRES 24 y 437 THR THR ILE SER LEU TYR LEU GLN PRO GLY GLN PRO LEU SEQRES 25 y 437 TYR VAL LEU LEU TYR ALA SER ALA ILE ILE PHE PHE CYS SEQRES 26 y 437 PHE PHE TYR THR ALA LEU VAL PHE ASN PRO ARG GLU THR SEQRES 27 y 437 ALA ASP ASN LEU LYS LYS SER GLY ALA PHE VAL PRO GLY SEQRES 28 y 437 ILE ARG PRO GLY GLU GLN THR ALA LYS TYR ILE ASP LYS SEQRES 29 y 437 VAL MET THR ARG LEU THR LEU VAL GLY ALA LEU TYR ILE SEQRES 30 y 437 THR PHE ILE CYS LEU ILE PRO GLU PHE MET ARG ASP ALA SEQRES 31 y 437 MET LYS VAL PRO PHE TYR PHE GLY GLY THR SER LEU LEU SEQRES 32 y 437 ILE VAL VAL VAL VAL ILE MET ASP PHE MET ALA GLN VAL SEQRES 33 y 437 GLN THR LEU MET MET SER SER GLN TYR GLU SER ALA LEU SEQRES 34 y 437 LYS LYS ALA ASN LEU LYS GLY NH2 SEQRES 1 E 56 ACE GLU ALA ARG THR GLU VAL ARG LYS VAL ILE TRP PRO SEQRES 2 E 56 THR ARG GLN GLU THR LEU HIS THR THR LEU ILE VAL ALA SEQRES 3 E 56 ALA VAL THR ALA VAL MET SER LEU ILE LEU TRP GLY LEU SEQRES 4 E 56 ASP GLY ILE LEU VAL ARG LEU VAL SER PHE ILE THR GLY SEQRES 5 E 56 LEU ARG PHE NH2 SEQRES 1 G 67 ACE PHE LEU ILE VAL ALA ILE GLY LEU VAL GLY LEU ILE SEQRES 2 G 67 MET LEU GLN GLN GLY LYS GLY ALA ASP MET GLY ALA SER SEQRES 3 G 67 PHE GLY ALA GLY ALA SER ALA THR LEU PHE GLY SER SER SEQRES 4 G 67 GLY SER GLY ASN PHE MET THR ARG MET THR ALA LEU LEU SEQRES 5 G 67 ALA THR LEU PHE PHE ILE ILE SER LEU VAL LEU GLY ASN SEQRES 6 G 67 ILE NH2 SEQRES 1 n 101 ACE ALA LYS LYS ILE TRP LEU ALA LEU ALA GLY LEU VAL SEQRES 2 n 101 LEU ALA PHE SER ALA SER CYS ALA GLN TYR GLU ASP GLY SEQRES 3 n 101 SER SER GLY GLU LEU GLU ARG GLN HIS THR PHE ALA LEU SEQRES 4 n 101 HIS GLN ARG SER ILE SER GLY ASP GLY ASP SER PRO HIS SEQRES 5 n 101 SER TYR HIS SER LEU PRO GLU GLY VAL LYS MET THR LYS SEQRES 6 n 101 TYR LEU GLN GLU GLN LYS LEU ALA VAL ALA ALA VAL ALA SEQRES 7 n 101 ALA GLN ALA ASP LEU GLU LEU PHE SER THR PRO VAL TRP SEQRES 8 n 101 ILE SER GLN ALA GLN GLY ILE ARG ALA GLY SEQRES 1 p 76 G C G G G A A U A G C U C SEQRES 2 p 76 A G U U G G U A G A G C A SEQRES 3 p 76 C G A C C U U G C C A A G SEQRES 4 p 76 G U C G G G G U C G C G A SEQRES 5 p 76 G U U C G A G U C U C G U SEQRES 6 p 76 U U C C C G C U C C A SEQRES 1 a 76 G C C C G G A U A G C U C SEQRES 2 a 76 A G U C G G U A G A G C A SEQRES 3 a 76 G G G G A U U G A A MIA A U SEQRES 4 a 76 C C C C G U G U C C U U G SEQRES 5 a 76 G U U C G A U U C C G A G SEQRES 6 a 76 U C C G G G C A C C A SEQRES 1 5 234 MET ALA LYS LEU THR LYS ARG MET ARG VAL ILE ARG GLU SEQRES 2 5 234 LYS VAL ASP ALA THR LYS GLN TYR ASP ILE ASN GLU ALA SEQRES 3 5 234 ILE ALA LEU LEU LYS GLU LEU ALA THR ALA LYS PHE VAL SEQRES 4 5 234 GLU SER VAL ASP VAL ALA VAL ASN LEU GLY ILE ASP ALA SEQRES 5 5 234 ARG LYS SER ASP GLN ASN VAL ARG GLY ALA THR VAL LEU SEQRES 6 5 234 PRO HIS GLY THR GLY ARG SER VAL ARG VAL ALA VAL PHE SEQRES 7 5 234 THR GLN GLY ALA ASN ALA GLU ALA ALA LYS ALA ALA GLY SEQRES 8 5 234 ALA GLU LEU VAL GLY MET GLU ASP LEU ALA ASP GLN ILE SEQRES 9 5 234 LYS LYS GLY GLU MET ASN PHE ASP VAL VAL ILE ALA SER SEQRES 10 5 234 PRO ASP ALA MET ARG VAL VAL GLY GLN LEU GLY GLN VAL SEQRES 11 5 234 LEU GLY PRO ARG GLY LEU MET PRO ASN PRO LYS VAL GLY SEQRES 12 5 234 THR VAL THR PRO ASN VAL ALA GLU ALA VAL LYS ASN ALA SEQRES 13 5 234 LYS ALA GLY GLN VAL ARG TYR ARG ASN ASP LYS ASN GLY SEQRES 14 5 234 ILE ILE HIS THR THR ILE GLY LYS VAL ASP PHE ASP ALA SEQRES 15 5 234 ASP LYS LEU LYS GLU ASN LEU GLU ALA LEU LEU VAL ALA SEQRES 16 5 234 LEU LYS LYS ALA LYS PRO THR GLN ALA LYS GLY VAL TYR SEQRES 17 5 234 ILE LYS LYS VAL SER ILE SER THR THR MET GLY ALA GLY SEQRES 18 5 234 VAL ALA VAL ASP GLN ALA GLY LEU SER ALA SER VAL ASN SEQRES 1 T 100 MET ILE ARG GLU GLU ARG LEU LEU LYS VAL LEU ARG ALA SEQRES 2 T 100 PRO HIS VAL SER GLU LYS ALA SER THR ALA MET GLU LYS SEQRES 3 T 100 SER ASN THR ILE VAL LEU LYS VAL ALA LYS ASP ALA THR SEQRES 4 T 100 LYS ALA GLU ILE LYS ALA ALA VAL GLN LYS LEU PHE GLU SEQRES 5 T 100 VAL GLU VAL GLU VAL VAL ASN THR LEU VAL VAL LYS GLY SEQRES 6 T 100 LYS VAL LYS ARG HIS GLY GLN ARG ILE GLY ARG ARG SER SEQRES 7 T 100 ASP TRP LYS LYS ALA TYR VAL THR LEU LYS GLU GLY GLN SEQRES 8 T 100 ASN LEU ASP PHE VAL GLY GLY ALA GLU SEQRES 1 U 103 ALA ALA LYS ILE ARG ARG ASP ASP GLU VAL ILE VAL LEU SEQRES 2 U 103 THR GLY LYS ASP LYS GLY LYS ARG GLY LYS VAL LYS ASN SEQRES 3 U 103 VAL LEU SER SER GLY LYS VAL ILE VAL GLU GLY ILE ASN SEQRES 4 U 103 LEU VAL LYS LYS HIS GLN LYS PRO VAL PRO ALA LEU ASN SEQRES 5 U 103 GLN PRO GLY GLY ILE VAL GLU LYS GLU ALA ALA ILE GLN SEQRES 6 U 103 VAL SER ASN VAL ALA ILE PHE ASN ALA ALA THR GLY LYS SEQRES 7 U 103 ALA ASP ARG VAL GLY PHE ARG PHE GLU ASP GLY LYS LYS SEQRES 8 U 103 VAL ARG PHE PHE LYS SER ASN SER GLU THR ILE LYS SEQRES 1 Y 63 MET LYS ALA LYS GLU LEU ARG GLU LYS SER VAL GLU GLU SEQRES 2 Y 63 LEU ASN THR GLU LEU LEU ASN LEU LEU ARG GLU GLN PHE SEQRES 3 Y 63 ASN LEU ARG MET GLN ALA ALA SER GLY GLN LEU GLN GLN SEQRES 4 Y 63 SER HIS LEU LEU LYS GLN VAL ARG ARG ASP VAL ALA ARG SEQRES 5 Y 63 VAL LYS THR LEU LEU ASN GLU LYS ALA GLY ALA SEQRES 1 1 63 A A G G A C G U G C U A A SEQRES 2 1 63 U C U G C G A U A A G C G SEQRES 3 1 63 U C G G U A A G G U G A U SEQRES 4 1 63 A U G A A C C G U U A U A SEQRES 5 1 63 A C C G G C G A U U U SEQRES 1 2 36 A A G G G U U C C U G U C SEQRES 2 2 36 C A A C G U U A A U C G G SEQRES 3 2 36 G G C A G G G U G A SEQRES 1 3 44 A G G C G U G A U G A C G SEQRES 2 3 44 A G G C A C U A C G G U G SEQRES 3 3 44 C U G A A G C A A C A A A SEQRES 4 3 44 U G C C C SEQRES 1 4 109 C U G A A C A U U G A G C SEQRES 2 4 109 C U U G A U G U G U A G G SEQRES 3 4 109 A U A G G U G G G A G G C SEQRES 4 4 109 U U U G A A G U G U G G A SEQRES 5 4 109 C G C C A G U C U G C A U SEQRES 6 4 109 G G A G C C G A C C U U G SEQRES 7 4 109 A A A U A C C A C C C U U SEQRES 8 4 109 U A A U G U U U G A U G U SEQRES 9 4 109 U C U A A MODRES 3J46 MIA a 37 A HET ACE y 5 3 HET NH2 y 441 1 HET ACE E 73 3 HET NH2 E 128 1 HET ACE G 8 3 HET NH2 G 74 1 HET ACE n 0 3 HET MIA a 37 29 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP HETNAM MIA 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE FORMUL 1 ACE 4(C2 H4 O) FORMUL 1 NH2 3(H2 N) FORMUL 6 MIA C16 H24 N5 O7 P S HELIX 1 1 GLY y 6 LEU y 16 1 11 HELIX 2 2 LEU y 16 ILE y 39 1 24 HELIX 3 3 ASP y 45 GLN y 55 1 11 HELIX 4 4 GLY y 58 GLY y 69 1 12 HELIX 5 5 GLY y 81 HIS y 99 1 19 HELIX 6 6 HIS y 99 GLU y 108 1 10 HELIX 7 7 GLU y 108 MET y 142 1 35 HELIX 8 8 GLY y 153 GLY y 182 1 30 HELIX 9 9 GLY y 186 ALA y 210 1 25 HELIX 10 10 ASP y 214 GLY y 240 1 27 HELIX 11 11 GLY y 273 THR y 298 1 26 HELIX 12 12 TRP y 300 GLN y 311 1 12 HELIX 13 13 LEU y 316 VAL y 336 1 21 HELIX 14 14 ARG y 340 SER y 349 1 10 HELIX 15 15 GLY y 359 LYS y 396 1 38 HELIX 16 16 THR y 404 LEU y 438 1 35 HELIX 17 17 GLU E 74 ARG E 87 1 14 HELIX 18 18 LEU E 91 THR E 93 5 3 HELIX 19 19 THR E 94 PHE E 127 1 34 HELIX 20 20 PHE G 9 ALA G 32 1 24 HELIX 21 21 MET G 52 ASN G 72 1 21 HELIX 22 22 ALA n 1 ALA n 14 1 14 HELIX 23 23 ALA n 74 ALA n 78 5 5 HELIX 24 24 THR 5 5 GLU 5 13 1 9 HELIX 25 25 ASP 5 22 LEU 5 33 1 12 HELIX 26 26 LEU 5 100 LYS 5 105 1 6 HELIX 27 27 ASN 5 148 GLY 5 159 1 12 HELIX 28 28 ASP 5 181 ALA 5 199 1 19 HELIX 29 29 THR T 22 SER T 27 1 6 HELIX 30 30 LYS T 40 ALA T 45 1 6 HELIX 31 31 ALA T 45 LEU T 50 1 6 HELIX 32 32 LYS Y 2 ARG Y 7 1 6 HELIX 33 33 LYS Y 9 LEU Y 22 1 14 HELIX 34 34 GLN Y 25 ALA Y 33 1 9 HELIX 35 35 GLN Y 39 ALA Y 61 1 23 SHEET 1 A 5 GLN 5 20 TYR 5 21 0 SHEET 2 A 5 GLY 5 221 VAL 5 224 1 O ALA 5 223 N TYR 5 21 SHEET 3 A 5 ILE 5 209 THR 5 216 -1 N ILE 5 214 O VAL 5 222 SHEET 4 A 5 VAL 5 42 LEU 5 48 -1 N ASN 5 47 O LYS 5 210 SHEET 5 A 5 ILE 5 170 GLY 5 176 -1 O GLY 5 176 N VAL 5 42 SHEET 1 B 2 GLY 5 61 VAL 5 64 0 SHEET 2 B 2 GLN 5 160 TYR 5 163 -1 O VAL 5 161 N THR 5 63 SHEET 1 C 2 VAL 5 75 VAL 5 77 0 SHEET 2 C 2 VAL 5 113 ILE 5 115 1 O ILE 5 115 N ALA 5 76 SHEET 1 D 3 VAL T 31 VAL T 34 0 SHEET 2 D 3 TRP T 80 TYR T 84 -1 O LYS T 81 N VAL T 34 SHEET 3 D 3 ASN T 59 VAL T 63 -1 N VAL T 63 O TRP T 80 SHEET 1 E 2 GLU T 54 VAL T 55 0 SHEET 2 E 2 LEU T 87 GLU T 89 -1 O LYS T 88 N GLU T 54 SHEET 1 F 3 VAL U 24 VAL U 27 0 SHEET 2 F 3 LYS U 32 VAL U 35 -1 O ILE U 34 N LYS U 25 SHEET 3 F 3 ILE U 64 GLN U 65 -1 O ILE U 64 N VAL U 33 SHEET 1 G 2 LEU U 40 HIS U 44 0 SHEET 2 G 2 ILE U 57 GLU U 61 -1 O LYS U 60 N VAL U 41 SHEET 1 H 2 VAL U 82 GLU U 87 0 SHEET 2 H 2 LYS U 91 PHE U 95 -1 O VAL U 92 N PHE U 86 SSBOND 1 CYS y 68 CYS n 19 1555 1555 2.30 LINK C ACE y 5 N GLY y 6 1555 1555 1.36 LINK C GLY y 440 N NH2 y 441 1555 1555 1.31 LINK C ACE E 73 N GLU E 74 1555 1555 1.37 LINK C PHE E 127 N NH2 E 128 1555 1555 1.35 LINK C ACE G 8 N PHE G 9 1555 1555 1.36 LINK C ILE G 73 N NH2 G 74 1555 1555 1.38 LINK C ACE n 0 N ALA n 1 1555 1555 1.34 LINK O3' A a 36 P MIA a 37 1555 1555 1.60 LINK O3' MIA a 37 P A a 38 1555 1555 1.60 CISPEP 1 SER n 44 GLY n 45 0 -0.08 CISPEP 2 VAL n 73 ALA n 74 0 -0.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 HETATM 1 C ACE y 5 28.233 -16.332 110.329 1.00 0.00 C HETATM 2 O ACE y 5 28.195 -16.973 109.281 1.00 0.00 O HETATM 3 CH3 ACE y 5 27.735 -14.925 110.430 1.00 0.00 C