PDB Short entry for 3JPW HEADER TRANSPORT PROTEIN 04-SEP-09 3JPW TITLE CRYSTAL STRUCTURE OF AMINO TERMINAL DOMAIN OF THE NMDA RECEPTOR TITLE 2 SUBUNIT NR2B CAVEAT 3JPW NAG A 501 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE [NMDA] RECEPTOR SUBUNIT EPSILON-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: AMINO TERMINAL DOMAIN; COMPND 5 SYNONYM: N-METHYL D-ASPARTATE RECEPTOR SUBTYPE 2B, NMDAR2B, NR2B; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIN2B; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS NMDA RECEPTOR, AMINO TERMINAL DOMAIN, PHENYLETHANOLAMINE, CELL KEYWDS 2 JUNCTION, CELL MEMBRANE, GLYCOPROTEIN, ION TRANSPORT, IONIC CHANNEL, KEYWDS 3 MAGNESIUM, MEMBRANE, PHOSPHOPROTEIN, POSTSYNAPTIC CELL MEMBRANE, KEYWDS 4 RECEPTOR, SYNAPSE, TRANSMEMBRANE, TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.KARAKAS,N.SIMOROWSKI,H.FURUKAWA REVDAT 6 13-OCT-21 3JPW 1 SEQADV HETSYN REVDAT 5 29-JUL-20 3JPW 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 01-NOV-17 3JPW 1 REMARK REVDAT 3 13-JUL-11 3JPW 1 VERSN REVDAT 2 29-DEC-09 3JPW 1 JRNL REVDAT 1 08-DEC-09 3JPW 0 JRNL AUTH E.KARAKAS,N.SIMOROWSKI,H.FURUKAWA JRNL TITL STRUCTURE OF THE ZINC-BOUND AMINO-TERMINAL DOMAIN OF THE JRNL TITL 2 NMDA RECEPTOR NR2B SUBUNIT. JRNL REF EMBO J. V. 28 3910 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19910922 JRNL DOI 10.1038/EMBOJ.2009.338 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 25898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 1338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9323 - 6.0226 0.99 2591 115 0.2103 0.2565 REMARK 3 2 6.0226 - 4.7873 1.00 2514 136 0.1687 0.1964 REMARK 3 3 4.7873 - 4.1842 1.00 2481 130 0.1437 0.1557 REMARK 3 4 4.1842 - 3.8026 1.00 2472 140 0.1571 0.1875 REMARK 3 5 3.8026 - 3.5305 1.00 2464 135 0.1954 0.2365 REMARK 3 6 3.5305 - 3.3227 1.00 2435 138 0.2152 0.2571 REMARK 3 7 3.3227 - 3.1565 1.00 2483 138 0.2369 0.3265 REMARK 3 8 3.1565 - 3.0193 1.00 2429 141 0.2831 0.2928 REMARK 3 9 3.0193 - 2.9031 0.99 2400 136 0.3020 0.3499 REMARK 3 10 2.9031 - 2.8030 0.94 2291 129 0.3254 0.3198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 62.14 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.780 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 82.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -19.84000 REMARK 3 B22 (A**2) : -19.84000 REMARK 3 B33 (A**2) : 39.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2879 REMARK 3 ANGLE : 1.218 3933 REMARK 3 CHIRALITY : 0.077 458 REMARK 3 PLANARITY : 0.004 499 REMARK 3 DIHEDRAL : 19.378 1009 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055009. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25955 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.76700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP, SOLOMON REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.3M NACL, 2% PEG400, 0.1M MGCL2, 0.1M REMARK 280 ACETATE, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 303K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.75433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.50867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 59.50867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.75433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -356.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 29.75433 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 210 REMARK 465 ASP A 211 REMARK 465 GLY A 212 REMARK 465 ASP A 213 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 45 OG REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 PHE A 194 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 209 CG CD1 CD2 REMARK 470 SER A 214 OG REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 LYS A 222 CG CD CE NZ REMARK 470 SER A 312 OG REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 HIS A 325 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 328 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 337 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 LYS A 361 CG CD CE NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 GLU A 370 CG CD OE1 OE2 REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 LYS A 378 CD CE NZ REMARK 470 LYS A 380 CG CD CE NZ REMARK 470 LYS A 382 CG CD CE NZ REMARK 470 SER A 383 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 61 -1.55 79.28 REMARK 500 ASP A 136 34.66 -96.67 REMARK 500 THR A 174 -159.33 -96.55 REMARK 500 GLU A 200 -73.30 -72.98 REMARK 500 CYS A 232 -168.85 -177.85 REMARK 500 TYR A 282 28.85 -148.22 REMARK 500 TYR A 322 -69.95 -122.09 REMARK 500 HIS A 325 4.73 -55.54 REMARK 500 GLU A 326 74.73 -67.98 REMARK 500 LYS A 327 51.18 -114.37 REMARK 500 ARG A 328 30.28 -92.80 REMARK 500 ASN A 333 -29.15 -39.47 REMARK 500 LYS A 380 91.24 -165.45 REMARK 500 ASP A 381 67.43 65.72 REMARK 500 LYS A 382 7.78 57.80 REMARK 500 PRO A 392 170.36 -57.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 701 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 131 O REMARK 620 2 PHE A 146 O 109.2 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JPY RELATED DB: PDB DBREF 3JPW A 32 394 UNP Q00960 NMDE2_RAT 32 394 SEQADV 3JPW ASP A 348 UNP Q00960 ASN 348 ENGINEERED MUTATION SEQRES 1 A 363 PRO PRO SER ILE GLY ILE ALA VAL ILE LEU VAL GLY THR SEQRES 2 A 363 SER ASP GLU VAL ALA ILE LYS ASP ALA HIS GLU LYS ASP SEQRES 3 A 363 ASP PHE HIS HIS LEU SER VAL VAL PRO ARG VAL GLU LEU SEQRES 4 A 363 VAL ALA MET ASN GLU THR ASP PRO LYS SER ILE ILE THR SEQRES 5 A 363 ARG ILE CYS ASP LEU MET SER ASP ARG LYS ILE GLN GLY SEQRES 6 A 363 VAL VAL PHE ALA ASP ASP THR ASP GLN GLU ALA ILE ALA SEQRES 7 A 363 GLN ILE LEU ASP PHE ILE SER ALA GLN THR LEU THR PRO SEQRES 8 A 363 ILE LEU GLY ILE HIS GLY GLY SER SER MET ILE MET ALA SEQRES 9 A 363 ASP LYS ASP GLU SER SER MET PHE PHE GLN PHE GLY PRO SEQRES 10 A 363 SER ILE GLU GLN GLN ALA SER VAL MET LEU ASN ILE MET SEQRES 11 A 363 GLU GLU TYR ASP TRP TYR ILE PHE SER ILE VAL THR THR SEQRES 12 A 363 TYR PHE PRO GLY TYR GLN ASP PHE VAL ASN LYS ILE ARG SEQRES 13 A 363 SER THR ILE GLU ASN SER PHE VAL GLY TRP GLU LEU GLU SEQRES 14 A 363 GLU VAL LEU LEU LEU ASP MET SER LEU ASP ASP GLY ASP SEQRES 15 A 363 SER LYS ILE GLN ASN GLN LEU LYS LYS LEU GLN SER PRO SEQRES 16 A 363 ILE ILE LEU LEU TYR CYS THR LYS GLU GLU ALA THR TYR SEQRES 17 A 363 ILE PHE GLU VAL ALA ASN SER VAL GLY LEU THR GLY TYR SEQRES 18 A 363 GLY TYR THR TRP ILE VAL PRO SER LEU VAL ALA GLY ASP SEQRES 19 A 363 THR ASP THR VAL PRO SER GLU PHE PRO THR GLY LEU ILE SEQRES 20 A 363 SER VAL SER TYR ASP GLU TRP ASP TYR GLY LEU PRO ALA SEQRES 21 A 363 ARG VAL ARG ASP GLY ILE ALA ILE ILE THR THR ALA ALA SEQRES 22 A 363 SER ASP MET LEU SER GLU HIS SER PHE ILE PRO GLU PRO SEQRES 23 A 363 LYS SER SER CYS TYR ASN THR HIS GLU LYS ARG ILE TYR SEQRES 24 A 363 GLN SER ASN MET LEU ASN ARG TYR LEU ILE ASN VAL THR SEQRES 25 A 363 PHE GLU GLY ARG ASP LEU SER PHE SER GLU ASP GLY TYR SEQRES 26 A 363 GLN MET HIS PRO LYS LEU VAL ILE ILE LEU LEU ASN LYS SEQRES 27 A 363 GLU ARG LYS TRP GLU ARG VAL GLY LYS TRP LYS ASP LYS SEQRES 28 A 363 SER LEU GLN MET LYS TYR TYR VAL TRP PRO ARG MET MODRES 3JPW ASN A 74 ASN GLYCOSYLATION SITE MODRES 3JPW ASN A 341 ASN GLYCOSYLATION SITE HET NAG A 501 14 HET NAG A 502 14 HET CL A 601 1 HET CL A 602 1 HET CL A 603 1 HET CL A 604 1 HET CL A 605 1 HET CL A 606 1 HET CL A 607 1 HET CL A 608 1 HET CL A 609 1 HET CL A 610 1 HET CL A 611 1 HET CL A 612 1 HET CL A 613 1 HET CL A 614 1 HET CL A 615 1 HET CL A 616 1 HET CL A 617 1 HET NA A 701 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 4 CL 17(CL 1-) FORMUL 21 NA NA 1+ FORMUL 22 HOH *18(H2 O) HELIX 1 1 ALA A 53 GLU A 55 5 3 HELIX 2 2 PRO A 78 ASP A 91 1 14 HELIX 3 3 ALA A 107 THR A 119 1 13 HELIX 4 4 GLY A 128 SER A 131 5 4 HELIX 5 5 ILE A 150 GLU A 162 1 13 HELIX 6 6 TYR A 179 GLU A 191 1 13 HELIX 7 7 GLN A 217 LEU A 220 1 4 HELIX 8 8 LYS A 234 ASN A 245 1 12 HELIX 9 9 SER A 260 ALA A 263 1 4 HELIX 10 10 LEU A 289 HIS A 311 1 23 HELIX 11 11 ILE A 329 LEU A 339 1 11 SHEET 1 A 5 ARG A 67 MET A 73 0 SHEET 2 A 5 GLY A 36 VAL A 42 1 N VAL A 39 O VAL A 71 SHEET 3 A 5 VAL A 97 ASP A 101 1 O VAL A 98 N ALA A 38 SHEET 4 A 5 ILE A 123 HIS A 127 1 O LEU A 124 N VAL A 97 SHEET 5 A 5 PHE A 143 GLN A 145 1 O PHE A 144 N GLY A 125 SHEET 1 B 8 GLU A 198 LEU A 204 0 SHEET 2 B 8 ILE A 168 THR A 173 1 N ILE A 171 O LEU A 203 SHEET 3 B 8 ILE A 227 TYR A 231 1 O LEU A 229 N VAL A 172 SHEET 4 B 8 THR A 255 VAL A 258 1 O THR A 255 N ILE A 228 SHEET 5 B 8 LEU A 277 SER A 281 1 O ILE A 278 N TRP A 256 SHEET 6 B 8 LEU A 362 LEU A 367 -1 O ILE A 365 N SER A 279 SHEET 7 B 8 TRP A 373 TRP A 379 -1 O GLU A 374 N LEU A 366 SHEET 8 B 8 LEU A 384 MET A 386 -1 O GLN A 385 N LYS A 378 SHEET 1 C 2 THR A 343 PHE A 344 0 SHEET 2 C 2 ARG A 347 ASP A 348 -1 O ARG A 347 N PHE A 344 SSBOND 1 CYS A 86 CYS A 321 1555 1555 2.05 LINK ND2 ASN A 74 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 341 C1 NAG A 502 1555 1555 1.44 LINK O SER A 131 NA NA A 701 1555 1555 2.19 LINK O PHE A 146 NA NA A 701 1555 1555 2.31 CRYST1 142.975 142.975 89.263 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006994 0.004038 0.000000 0.00000 SCALE2 0.000000 0.008076 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011203 0.00000