PDB Short entry for 3JW1 HEADER HYDROLASE 17-SEP-09 3JW1 TITLE CRYSTAL STRUCTURE OF BOVINE PANCREATIC RIBONUCLEASE COMPLEXED WITH TITLE 2 URIDINE-5'-MONOPHOSPHATE AT 1.60 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE PANCREATIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNASE 1, RNASE A; COMPND 5 EC: 3.1.27.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS RIBONUCLEASE A, URIDINE-5'-MONOPHOSPHATE, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, CENTER FOR HIGH-THROUGHPUT STRUCTURAL KEYWDS 3 BIOLOGY, CHTSB, ENDONUCLEASE, GLYCATION, GLYCOPROTEIN, HYDROLASE, KEYWDS 4 NUCLEASE, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR S.B.LARSON,J.S.DAY,C.NGUYEN,R.CUDNEY,A.MCPHERSON,CENTER FOR HIGH- AUTHOR 2 THROUGHPUT STRUCTURAL BIOLOGY (CHTSB) REVDAT 5 06-SEP-23 3JW1 1 REMARK REVDAT 4 01-NOV-17 3JW1 1 REMARK REVDAT 3 13-JUL-11 3JW1 1 VERSN REVDAT 2 16-FEB-10 3JW1 1 JRNL REVDAT 1 06-OCT-09 3JW1 0 JRNL AUTH S.B.LARSON,J.S.DAY,C.NGUYEN,R.CUDNEY,A.MCPHERSON JRNL TITL STRUCTURE OF BOVINE PANCREATIC RIBONUCLEASE COMPLEXED WITH JRNL TITL 2 URIDINE 5'-MONOPHOSPHATE AT 1.60 A RESOLUTION. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 66 113 2010 JRNL REFN ESSN 1744-3091 JRNL PMID 20124705 JRNL DOI 10.1107/S174430910905194X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.B.LARSON,J.S.DAY,C.NGUYEN,R.CUDNEY,A.MCPHERSON REMARK 1 TITL PROGRESS IN THE DEVELOPMENT OF AN ALTERNATIVE APPROACH TO REMARK 1 TITL 2 MACROMOLECULAR CRYSTALLIZATION REMARK 1 REF CRYST.GROWTH DES. V. 8 3038 2008 REMARK 1 REFN ISSN 1528-7483 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.B.LARSON,J.S.DAY,R.CUDNEY,A.MCPHERSON REMARK 1 TITL A NOVEL STRATEGY FOR THE CRYSTALLIZATION OF PROTEINS: X-RAY REMARK 1 TITL 2 DIFFRACTION VALIDATION. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 63 310 2007 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 17327668 REMARK 1 DOI 10.1107/S0907444906053303 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.MCPHERSON,B.CUDNEY REMARK 1 TITL SEARCHING FOR SILVER BULLETS: AN ALTERNATIVE STRATEGY FOR REMARK 1 TITL 2 CRYSTALLIZING MACROMOLECULES. REMARK 1 REF J.STRUCT.BIOL. V. 156 387 2006 REMARK 1 REFN ISSN 1047-8477 REMARK 1 PMID 17101277 REMARK 1 DOI 10.1016/J.JSB.2006.09.006 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 23360 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2540 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1126 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.4110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 211 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 33.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.85000 REMARK 3 B22 (A**2) : -1.64000 REMARK 3 B33 (A**2) : -0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.94000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.133 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.709 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2026 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1884 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2751 ; 1.549 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4275 ; 0.689 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 6.662 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;35.458 ;25.055 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 349 ;15.327 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;12.911 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2241 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 471 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 441 ; 0.220 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1846 ; 0.216 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 985 ; 0.192 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1296 ; 0.096 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 284 ; 0.209 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 8 ; 0.165 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.163 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 62 ; 0.201 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.234 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 2 ; 0.091 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1254 ; 3.430 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 502 ; 0.925 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2033 ; 4.409 ; 8.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 772 ; 5.312 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 716 ; 7.017 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 14 REMARK 3 RESIDUE RANGE : A 49 A 80 REMARK 3 RESIDUE RANGE : A 103 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): -22.0753 -24.7645 21.2675 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.0520 REMARK 3 T33: 0.0652 T12: -0.0452 REMARK 3 T13: -0.0137 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.6553 L22: 1.7301 REMARK 3 L33: 4.3702 L12: -0.0671 REMARK 3 L13: -0.2462 L23: -0.6987 REMARK 3 S TENSOR REMARK 3 S11: -0.0971 S12: 0.1771 S13: 0.2328 REMARK 3 S21: -0.1240 S22: 0.1011 S23: 0.0125 REMARK 3 S31: 0.0953 S32: 0.0418 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 48 REMARK 3 RESIDUE RANGE : A 81 A 102 REMARK 3 ORIGIN FOR THE GROUP (A): -24.2179 -42.5451 23.7912 REMARK 3 T TENSOR REMARK 3 T11: 0.2080 T22: 0.0586 REMARK 3 T33: 0.1301 T12: 0.0000 REMARK 3 T13: 0.0117 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 1.9681 L22: 3.4723 REMARK 3 L33: 0.7566 L12: 0.4799 REMARK 3 L13: 0.4189 L23: 1.5884 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: 0.1741 S13: -0.1984 REMARK 3 S21: 0.4300 S22: -0.0382 S23: 0.1719 REMARK 3 S31: 0.1976 S32: 0.0160 S33: 0.0241 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 14 REMARK 3 RESIDUE RANGE : B 49 B 80 REMARK 3 RESIDUE RANGE : B 103 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1527 -14.3844 -3.8036 REMARK 3 T TENSOR REMARK 3 T11: 0.0185 T22: 0.0623 REMARK 3 T33: 0.0946 T12: -0.0294 REMARK 3 T13: -0.0128 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 3.0913 L22: 1.8855 REMARK 3 L33: 9.4566 L12: 0.7678 REMARK 3 L13: -1.5124 L23: -3.4246 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.0333 S13: 0.3538 REMARK 3 S21: -0.1313 S22: 0.2751 S23: 0.1262 REMARK 3 S31: 0.3482 S32: -0.4785 S33: -0.2436 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 15 B 48 REMARK 3 RESIDUE RANGE : B 81 B 102 REMARK 3 ORIGIN FOR THE GROUP (A): -17.1586 -32.5503 -1.9196 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.0399 REMARK 3 T33: 0.2197 T12: -0.0222 REMARK 3 T13: 0.0263 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 5.1114 L22: 3.9482 REMARK 3 L33: 2.1747 L12: 2.0594 REMARK 3 L13: 0.4737 L23: 2.5735 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: -0.0096 S13: -0.8544 REMARK 3 S21: 0.2699 S22: -0.0637 S23: -0.0955 REMARK 3 S31: 0.1505 S32: -0.0266 S33: 0.1007 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): -24.7746 -34.2988 15.0848 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.0120 REMARK 3 T33: 0.0321 T12: -0.0139 REMARK 3 T13: -0.0195 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 3.3252 L22: 7.1874 REMARK 3 L33: 13.9761 L12: -4.6890 REMARK 3 L13: 2.6885 L23: -1.1851 REMARK 3 S TENSOR REMARK 3 S11: 0.1060 S12: -0.1204 S13: -0.3094 REMARK 3 S21: -0.2457 S22: 0.1280 S23: 0.4394 REMARK 3 S31: -0.3528 S32: -0.2875 S33: -0.2340 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 201 B 201 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3638 -23.8364 -10.2339 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: 0.0551 REMARK 3 T33: 0.0540 T12: -0.0601 REMARK 3 T13: 0.0094 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 14.1911 L22: 11.7580 REMARK 3 L33: 11.0827 L12: -0.4972 REMARK 3 L13: 12.4496 L23: 0.9179 REMARK 3 S TENSOR REMARK 3 S11: 0.1163 S12: 0.0483 S13: 0.1577 REMARK 3 S21: -0.2405 S22: -0.2251 S23: -0.1227 REMARK 3 S31: 0.0685 S32: 0.0170 S33: 0.1088 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JW1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25900 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 2.610 REMARK 200 R MERGE (I) : 0.02700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.15 REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DIRECT PLACEMENT IN UNIT CELL REMARK 200 STARTING MODEL: PDB ENTRY 1U1B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES BUFFER; RESERVOIR OF 25% REMARK 280 PEG3350 IN WATER; DROPLETS WERE 5-10 MM IN BASIC FUCHSIN, REMARK 280 TOBRAMYCIN, URIDINE-5'-MONOPHOSPHATE AND 1 MM IN RIBONUCLEASE A, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.42500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD21 ASN B 27 O CYS B 95 1.44 REMARK 500 H ARG B 39 O HOH B 220 1.52 REMARK 500 HH TYR B 76 O HOH B 213 1.55 REMARK 500 HZ2 LYS A 98 O HOH A 216 1.55 REMARK 500 H ASP B 38 O HOH B 220 1.57 REMARK 500 OG1 THR B 45 HN3 U5P B 201 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 166.33 178.95 REMARK 500 GLN A 60 -134.25 -103.48 REMARK 500 ASN A 94 72.34 -100.54 REMARK 500 ALA B 20 126.60 -33.22 REMARK 500 SER B 21 -84.83 -72.02 REMARK 500 ASN B 24 42.64 -100.33 REMARK 500 HIS B 48 65.17 -103.20 REMARK 500 GLN B 60 -138.15 -106.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE U5P B 201 DBREF 3JW1 A 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 3JW1 B 1 124 UNP P61823 RNAS1_BOVIN 27 150 SEQRES 1 A 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 A 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 A 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 A 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 A 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 A 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 A 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 A 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 A 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 A 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 B 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 B 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 B 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 B 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 B 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 B 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 B 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 B 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 B 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 B 124 VAL HIS PHE ASP ALA SER VAL HET U5P A 201 32 HET U5P B 201 39 HETNAM U5P URIDINE-5'-MONOPHOSPHATE FORMUL 3 U5P 2(C9 H13 N2 O9 P) FORMUL 5 HOH *211(H2 O) HELIX 1 1 THR A 3 MET A 13 1 11 HELIX 2 2 ASN A 24 ARG A 33 1 10 HELIX 3 3 SER A 50 ALA A 56 1 7 HELIX 4 4 VAL A 57 GLN A 60 5 4 HELIX 5 5 THR B 3 MET B 13 1 11 HELIX 6 6 ASN B 24 ARG B 33 1 10 HELIX 7 7 SER B 50 ALA B 56 1 7 HELIX 8 8 VAL B 57 GLN B 60 5 4 SHEET 1 A 3 VAL A 43 VAL A 47 0 SHEET 2 A 3 MET A 79 GLU A 86 -1 O CYS A 84 N ASN A 44 SHEET 3 A 3 TYR A 97 LYS A 104 -1 O LYS A 104 N MET A 79 SHEET 1 B 4 LYS A 61 VAL A 63 0 SHEET 2 B 4 CYS A 72 GLN A 74 -1 O GLN A 74 N LYS A 61 SHEET 3 B 4 ILE A 106 GLU A 111 -1 O VAL A 108 N TYR A 73 SHEET 4 B 4 VAL A 116 SER A 123 -1 O VAL A 118 N ALA A 109 SHEET 1 C 3 VAL B 43 VAL B 47 0 SHEET 2 C 3 MET B 79 GLU B 86 -1 O CYS B 84 N ASN B 44 SHEET 3 C 3 TYR B 97 LYS B 104 -1 O LYS B 104 N MET B 79 SHEET 1 D 4 LYS B 61 VAL B 63 0 SHEET 2 D 4 CYS B 72 GLN B 74 -1 O GLN B 74 N LYS B 61 SHEET 3 D 4 ILE B 106 GLU B 111 -1 O VAL B 108 N TYR B 73 SHEET 4 D 4 VAL B 116 SER B 123 -1 O VAL B 118 N ALA B 109 SSBOND 1 CYS A 26 CYS A 84 1555 1555 2.05 SSBOND 2 CYS A 40 CYS A 95 1555 1555 2.05 SSBOND 3 CYS A 58 CYS A 110 1555 1555 2.02 SSBOND 4 CYS A 65 CYS A 72 1555 1555 2.06 SSBOND 5 CYS B 26 CYS B 84 1555 1555 2.05 SSBOND 6 CYS B 40 CYS B 95 1555 1555 2.04 SSBOND 7 CYS B 58 CYS B 110 1555 1555 2.03 SSBOND 8 CYS B 65 CYS B 72 1555 1555 2.05 CISPEP 1 TYR A 92 PRO A 93 0 9.07 CISPEP 2 ASN A 113 PRO A 114 0 9.24 CISPEP 3 TYR B 92 PRO B 93 0 10.89 CISPEP 4 ASN B 113 PRO B 114 0 4.75 SITE 1 AC1 15 HIS A 12 LYS A 41 VAL A 43 ASN A 44 SITE 2 AC1 15 THR A 45 HIS A 119 PHE A 120 HOH A 136 SITE 3 AC1 15 HOH A 144 HOH A 156 HOH A 158 HOH A 167 SITE 4 AC1 15 HOH A 174 HOH A 219 HOH A 220 SITE 1 AC2 15 HOH A 232 HIS B 12 LYS B 41 VAL B 43 SITE 2 AC2 15 ASN B 44 THR B 45 LYS B 66 HIS B 119 SITE 3 AC2 15 PHE B 120 HOH B 175 HOH B 178 HOH B 187 SITE 4 AC2 15 HOH B 202 HOH B 207 HOH B 214 CRYST1 30.730 74.850 50.520 90.00 107.80 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032541 0.000000 0.010448 0.00000 SCALE2 0.000000 0.013360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020789 0.00000