PDB Short entry for 3JWR HEADER HYDROLASE 18-SEP-09 3JWR TITLE CRYSTAL STRUCTURE OF CHIMERIC PDE5/PDE6 CATALYTIC DOMAIN COMPLEXED TITLE 2 WITH 3-ISOBUTYL-1-METHYLXANTHINE (IBMX) AND PDE6 GAMMA-SUBUNIT TITLE 3 INHIBITORY PEPTIDE 70-87. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE CATALYTIC COMPND 3 DOMAIN, CONE CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE SUBUNIT COMPND 4 ALPHA CHIMERA; COMPND 5 CHAIN: A, B; COMPND 6 SYNONYM: CGMP-BINDING CGMP-SPECIFIC PHOSPHODIESTERASE, CGB-PDE, CGMP COMPND 7 PHOSPHODIESTERASE 6C; COMPND 8 EC: 3.1.4.35; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC COMPND 12 PHOSPHODIESTERASE SUBUNIT GAMMA; COMPND 13 CHAIN: C, D; COMPND 14 FRAGMENT: SEQUENCE DATABASE RESIDUES 70-87; COMPND 15 SYNONYM: GMP-PDE GAMMA; COMPND 16 EC: 3.1.4.17; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS MOSTLY ALPHA, CGMP, HYDROLASE, POLYMORPHISM, SENSORY TRANSDUCTION, KEYWDS 2 VISION EXPDTA X-RAY DIFFRACTION AUTHOR B.BARREN,L.GAKHAR,H.MURADOV,K.K.BOYD,S.RAMASWAMY,N.O.ARTEMYEV REVDAT 5 06-SEP-23 3JWR 1 REMARK SEQADV LINK REVDAT 4 01-NOV-17 3JWR 1 REMARK REVDAT 3 16-AUG-17 3JWR 1 SOURCE REMARK REVDAT 2 01-DEC-09 3JWR 1 JRNL REVDAT 1 13-OCT-09 3JWR 0 JRNL AUTH B.BARREN,L.GAKHAR,H.MURADOV,K.K.BOYD,S.RAMASWAMY, JRNL AUTH 2 N.O.ARTEMYEV JRNL TITL STRUCTURAL BASIS OF PHOSPHODIESTERASE 6 INHIBITION BY THE JRNL TITL 2 C-TERMINAL REGION OF THE GAMMA-SUBUNIT JRNL REF EMBO J. V. 28 3613 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19798052 JRNL DOI 10.1038/EMBOJ.2009.284 REMARK 2 REMARK 2 RESOLUTION. 2.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.4_161) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.610 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 17894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4166 - 5.7223 0.92 2579 115 0.1687 0.2130 REMARK 3 2 5.7223 - 4.5439 0.94 2467 149 0.1825 0.2452 REMARK 3 3 4.5439 - 3.9701 0.95 2454 133 0.1939 0.2646 REMARK 3 4 3.9701 - 3.6074 0.95 2444 126 0.2127 0.3161 REMARK 3 5 3.6074 - 3.3489 0.94 2390 142 0.2220 0.2815 REMARK 3 6 3.3489 - 3.1516 0.93 2381 124 0.2569 0.3251 REMARK 3 7 3.1516 - 2.9938 0.88 2258 132 0.3187 0.3672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 36.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5783 REMARK 3 ANGLE : 1.038 7826 REMARK 3 CHIRALITY : 0.064 870 REMARK 3 PLANARITY : 0.003 993 REMARK 3 DIHEDRAL : 20.150 2117 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 537:859 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 537:859 ) REMARK 3 ATOM PAIRS NUMBER : 2629 REMARK 3 RMSD : 0.042 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C AND (RESSEQ 71:87 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 71:87 ) REMARK 3 ATOM PAIRS NUMBER : 141 REMARK 3 RMSD : 0.031 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3JWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055256. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17916 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.990 REMARK 200 RESOLUTION RANGE LOW (A) : 40.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3JWQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 1 M SODIUM CITRATE, 2.5% REMARK 280 ETHANOL, PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.62850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.92700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.82550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.92700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.62850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.82550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 531 REMARK 465 SER A 532 REMARK 465 HIS A 533 REMARK 465 MET A 534 REMARK 465 GLU A 535 REMARK 465 GLU A 536 REMARK 465 GLN A 860 REMARK 465 GLY B 531 REMARK 465 GLN B 860 REMARK 465 TRP C 70 REMARK 465 TRP D 70 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 544 29.31 -76.50 REMARK 500 ALA A 545 -2.94 -153.96 REMARK 500 LYS A 630 -83.44 -87.93 REMARK 500 LYS A 633 76.15 57.00 REMARK 500 ASN A 636 1.26 -61.53 REMARK 500 CYS A 677 -76.97 -87.35 REMARK 500 GLN A 699 73.41 -62.44 REMARK 500 CYS A 825 -71.19 -102.84 REMARK 500 GLN A 827 -55.22 -26.38 REMARK 500 ALA B 544 29.95 -75.50 REMARK 500 ALA B 545 -3.00 -153.56 REMARK 500 ASN B 614 -168.75 -107.46 REMARK 500 LYS B 630 -81.88 -88.37 REMARK 500 LYS B 633 77.38 56.88 REMARK 500 ASN B 636 2.25 -62.21 REMARK 500 CYS B 677 -77.21 -88.38 REMARK 500 GLN B 699 76.24 -63.41 REMARK 500 ARG B 810 -18.19 -48.18 REMARK 500 CYS B 825 -72.56 -103.48 REMARK 500 GLN B 827 -53.22 -29.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 899 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 653 NE2 REMARK 620 2 ASP A 654 OD2 70.0 REMARK 620 3 ASP A 764 OD2 75.4 145.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 900 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 11 O REMARK 620 2 HOH B 12 O 128.5 REMARK 620 3 HOH B 15 O 112.5 67.2 REMARK 620 4 HOH B 16 O 76.1 62.8 118.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 899 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 12 O REMARK 620 2 HIS B 617 NE2 169.9 REMARK 620 3 HIS B 653 NE2 98.7 76.2 REMARK 620 4 ASP B 654 OD2 90.7 79.7 77.0 REMARK 620 5 ASP B 764 OD2 94.0 93.2 76.2 153.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 899 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IBM A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IBM A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IBM A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IBM B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IBM B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JWQ RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH SILDENAFIL DBREF 3JWR A 535 786 UNP O76074 PDE5A_HUMAN 535 786 DBREF 3JWR A 787 826 UNP P51160 PDE6C_HUMAN 746 785 DBREF 3JWR A 827 860 UNP O76074 PDE5A_HUMAN 827 860 DBREF 3JWR B 535 786 UNP O76074 PDE5A_HUMAN 535 786 DBREF 3JWR B 787 826 UNP P51160 PDE6C_HUMAN 746 785 DBREF 3JWR B 827 860 UNP O76074 PDE5A_HUMAN 827 860 DBREF 3JWR C 70 87 UNP P18545 CNRG_HUMAN 70 87 DBREF 3JWR D 70 87 UNP P18545 CNRG_HUMAN 70 87 SEQADV 3JWR GLY A 531 UNP O76074 EXPRESSION TAG SEQADV 3JWR SER A 532 UNP O76074 EXPRESSION TAG SEQADV 3JWR HIS A 533 UNP O76074 EXPRESSION TAG SEQADV 3JWR MET A 534 UNP O76074 EXPRESSION TAG SEQADV 3JWR GLY B 531 UNP O76074 EXPRESSION TAG SEQADV 3JWR SER B 532 UNP O76074 EXPRESSION TAG SEQADV 3JWR HIS B 533 UNP O76074 EXPRESSION TAG SEQADV 3JWR MET B 534 UNP O76074 EXPRESSION TAG SEQRES 1 A 330 GLY SER HIS MET GLU GLU THR ARG GLU LEU GLN SER LEU SEQRES 2 A 330 ALA ALA ALA VAL VAL PRO SER ALA GLN THR LEU LYS ILE SEQRES 3 A 330 THR ASP PHE SER PHE SER ASP PHE GLU LEU SER ASP LEU SEQRES 4 A 330 GLU THR ALA LEU CYS THR ILE ARG MET PHE THR ASP LEU SEQRES 5 A 330 ASN LEU VAL GLN ASN PHE GLN MET LYS HIS GLU VAL LEU SEQRES 6 A 330 CYS ARG TRP ILE LEU SER VAL LYS LYS ASN TYR ARG LYS SEQRES 7 A 330 ASN VAL ALA TYR HIS ASN TRP ARG HIS ALA PHE ASN THR SEQRES 8 A 330 ALA GLN CYS MET PHE ALA ALA LEU LYS ALA GLY LYS ILE SEQRES 9 A 330 GLN ASN LYS LEU THR ASP LEU GLU ILE LEU ALA LEU LEU SEQRES 10 A 330 ILE ALA ALA LEU SER HIS ASP LEU ASP HIS ARG GLY VAL SEQRES 11 A 330 ASN ASN SER TYR ILE GLN ARG SER GLU HIS PRO LEU ALA SEQRES 12 A 330 GLN LEU TYR CYS HIS SER ILE MET GLU HIS HIS HIS PHE SEQRES 13 A 330 ASP GLN CYS LEU MET ILE LEU ASN SER PRO GLY ASN GLN SEQRES 14 A 330 ILE LEU SER GLY LEU SER ILE GLU GLU TYR LYS THR THR SEQRES 15 A 330 LEU LYS ILE ILE LYS GLN ALA ILE LEU ALA THR ASP LEU SEQRES 16 A 330 ALA LEU TYR ILE LYS ARG ARG GLY GLU PHE PHE GLU LEU SEQRES 17 A 330 ILE ARG LYS ASN GLN PHE ASN LEU GLU ASP PRO HIS GLN SEQRES 18 A 330 LYS GLU LEU PHE LEU ALA MET LEU MET THR ALA CYS ASP SEQRES 19 A 330 LEU SER ALA ILE THR LYS PRO TRP PRO ILE GLN GLN ARG SEQRES 20 A 330 ILE ALA GLU LEU VAL ALA THR GLU PHE TRP GLU GLN GLY SEQRES 21 A 330 ASP LEU GLU ARG THR VAL LEU GLN GLN GLN PRO ILE PRO SEQRES 22 A 330 MET MET ASP ARG ASN LYS ARG ASP GLU LEU PRO LYS LEU SEQRES 23 A 330 GLN VAL GLY PHE ILE ASP PHE VAL CYS THR GLN LEU TYR SEQRES 24 A 330 GLU ALA LEU THR HIS VAL SER GLU ASP CYS PHE PRO LEU SEQRES 25 A 330 LEU ASP GLY CYS ARG LYS ASN ARG GLN LYS TRP GLN ALA SEQRES 26 A 330 LEU ALA GLU GLN GLN SEQRES 1 B 330 GLY SER HIS MET GLU GLU THR ARG GLU LEU GLN SER LEU SEQRES 2 B 330 ALA ALA ALA VAL VAL PRO SER ALA GLN THR LEU LYS ILE SEQRES 3 B 330 THR ASP PHE SER PHE SER ASP PHE GLU LEU SER ASP LEU SEQRES 4 B 330 GLU THR ALA LEU CYS THR ILE ARG MET PHE THR ASP LEU SEQRES 5 B 330 ASN LEU VAL GLN ASN PHE GLN MET LYS HIS GLU VAL LEU SEQRES 6 B 330 CYS ARG TRP ILE LEU SER VAL LYS LYS ASN TYR ARG LYS SEQRES 7 B 330 ASN VAL ALA TYR HIS ASN TRP ARG HIS ALA PHE ASN THR SEQRES 8 B 330 ALA GLN CYS MET PHE ALA ALA LEU LYS ALA GLY LYS ILE SEQRES 9 B 330 GLN ASN LYS LEU THR ASP LEU GLU ILE LEU ALA LEU LEU SEQRES 10 B 330 ILE ALA ALA LEU SER HIS ASP LEU ASP HIS ARG GLY VAL SEQRES 11 B 330 ASN ASN SER TYR ILE GLN ARG SER GLU HIS PRO LEU ALA SEQRES 12 B 330 GLN LEU TYR CYS HIS SER ILE MET GLU HIS HIS HIS PHE SEQRES 13 B 330 ASP GLN CYS LEU MET ILE LEU ASN SER PRO GLY ASN GLN SEQRES 14 B 330 ILE LEU SER GLY LEU SER ILE GLU GLU TYR LYS THR THR SEQRES 15 B 330 LEU LYS ILE ILE LYS GLN ALA ILE LEU ALA THR ASP LEU SEQRES 16 B 330 ALA LEU TYR ILE LYS ARG ARG GLY GLU PHE PHE GLU LEU SEQRES 17 B 330 ILE ARG LYS ASN GLN PHE ASN LEU GLU ASP PRO HIS GLN SEQRES 18 B 330 LYS GLU LEU PHE LEU ALA MET LEU MET THR ALA CYS ASP SEQRES 19 B 330 LEU SER ALA ILE THR LYS PRO TRP PRO ILE GLN GLN ARG SEQRES 20 B 330 ILE ALA GLU LEU VAL ALA THR GLU PHE TRP GLU GLN GLY SEQRES 21 B 330 ASP LEU GLU ARG THR VAL LEU GLN GLN GLN PRO ILE PRO SEQRES 22 B 330 MET MET ASP ARG ASN LYS ARG ASP GLU LEU PRO LYS LEU SEQRES 23 B 330 GLN VAL GLY PHE ILE ASP PHE VAL CYS THR GLN LEU TYR SEQRES 24 B 330 GLU ALA LEU THR HIS VAL SER GLU ASP CYS PHE PRO LEU SEQRES 25 B 330 LEU ASP GLY CYS ARG LYS ASN ARG GLN LYS TRP GLN ALA SEQRES 26 B 330 LEU ALA GLU GLN GLN SEQRES 1 C 18 TRP GLU ALA PHE ASN HIS LEU GLU LEU HIS GLU LEU ALA SEQRES 2 C 18 GLN TYR GLY ILE ILE SEQRES 1 D 18 TRP GLU ALA PHE ASN HIS LEU GLU LEU HIS GLU LEU ALA SEQRES 2 D 18 GLN TYR GLY ILE ILE HET ZN A 899 1 HET MG A 900 1 HET IBM A 901 16 HET IBM A 902 16 HET IBM A 903 16 HET ZN B 899 1 HET MG B 900 1 HET IBM B 901 16 HET IBM B 902 16 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM IBM 3-ISOBUTYL-1-METHYLXANTHINE FORMUL 5 ZN 2(ZN 2+) FORMUL 6 MG 2(MG 2+) FORMUL 7 IBM 5(C10 H14 N4 O2) FORMUL 14 HOH *17(H2 O) HELIX 1 1 THR A 537 ALA A 544 1 8 HELIX 2 2 SER A 550 LYS A 555 1 6 HELIX 3 3 SER A 567 LEU A 582 1 16 HELIX 4 4 ASN A 583 PHE A 588 1 6 HELIX 5 5 LYS A 591 ASN A 605 1 15 HELIX 6 6 ASN A 614 ALA A 631 1 18 HELIX 7 7 ILE A 634 LEU A 638 5 5 HELIX 8 8 THR A 639 HIS A 653 1 15 HELIX 9 9 ASN A 661 SER A 668 1 8 HELIX 10 10 HIS A 670 TYR A 676 1 7 HELIX 11 11 SER A 679 ASN A 694 1 16 HELIX 12 12 SER A 705 THR A 723 1 19 HELIX 13 13 ASP A 724 LYS A 741 1 18 HELIX 14 14 ASP A 748 LEU A 765 1 18 HELIX 15 15 SER A 766 LYS A 770 5 5 HELIX 16 16 PRO A 771 VAL A 796 1 26 HELIX 17 17 ILE A 802 ASP A 811 5 10 HELIX 18 18 GLU A 812 CYS A 825 1 14 HELIX 19 19 CYS A 825 SER A 836 1 12 HELIX 20 20 CYS A 839 GLU A 858 1 20 HELIX 21 21 SER B 532 ALA B 544 1 13 HELIX 22 22 SER B 550 LYS B 555 1 6 HELIX 23 23 SER B 567 LEU B 582 1 16 HELIX 24 24 ASN B 583 PHE B 588 1 6 HELIX 25 25 LYS B 591 ASN B 605 1 15 HELIX 26 26 ASN B 614 ALA B 631 1 18 HELIX 27 27 ILE B 634 LEU B 638 5 5 HELIX 28 28 THR B 639 HIS B 653 1 15 HELIX 29 29 ASN B 661 SER B 668 1 8 HELIX 30 30 HIS B 670 TYR B 676 1 7 HELIX 31 31 SER B 679 ASN B 694 1 16 HELIX 32 32 SER B 705 THR B 723 1 19 HELIX 33 33 ASP B 724 LYS B 741 1 18 HELIX 34 34 ASP B 748 LEU B 765 1 18 HELIX 35 35 SER B 766 LYS B 770 5 5 HELIX 36 36 PRO B 771 VAL B 796 1 26 HELIX 37 37 ILE B 802 ASP B 811 5 10 HELIX 38 38 GLU B 812 CYS B 825 1 14 HELIX 39 39 CYS B 825 SER B 836 1 12 HELIX 40 40 CYS B 839 GLU B 858 1 20 HELIX 41 41 GLU C 77 TYR C 84 1 8 HELIX 42 42 GLU D 77 TYR D 84 1 8 SSBOND 1 CYS A 677 CYS B 677 1555 3454 2.03 LINK NE2 HIS A 653 ZN ZN A 899 1555 1555 2.30 LINK OD2 ASP A 654 ZN ZN A 899 1555 1555 2.07 LINK OD2 ASP A 764 ZN ZN A 899 1555 1555 2.05 LINK O HOH B 11 MG MG B 900 1555 1555 2.49 LINK O HOH B 12 ZN ZN B 899 1555 1555 2.04 LINK O HOH B 12 MG MG B 900 1555 1555 2.36 LINK O HOH B 15 MG MG B 900 1555 1555 2.44 LINK O HOH B 16 MG MG B 900 1555 1555 2.37 LINK NE2 HIS B 617 ZN ZN B 899 1555 1555 2.38 LINK NE2 HIS B 653 ZN ZN B 899 1555 1555 2.21 LINK OD2 ASP B 654 ZN ZN B 899 1555 1555 2.09 LINK OD2 ASP B 764 ZN ZN B 899 1555 1555 2.05 SITE 1 AC1 4 HIS A 617 HIS A 653 ASP A 654 ASP A 764 SITE 1 AC2 6 HOH B 12 HOH B 18 HIS B 617 HIS B 653 SITE 2 AC2 6 ASP B 654 ASP B 764 SITE 1 AC3 4 HOH A 5 ASP A 654 GLU A 682 THR A 723 SITE 1 AC4 4 HIS A 613 LEU A 765 GLN A 817 PHE A 820 SITE 1 AC5 6 LEU A 693 GLN A 699 LEU A 701 SER A 702 SITE 2 AC5 6 LEU A 704 TYR A 709 SITE 1 AC6 6 ASP A 687 LEU A 690 ALA B 545 ALA B 546 SITE 2 AC6 6 VAL B 547 HIS B 592 SITE 1 AC7 7 HOH B 11 HOH B 12 HOH B 15 HOH B 16 SITE 2 AC7 7 ASP B 654 GLU B 682 THR B 723 SITE 1 AC8 5 LEU B 765 VAL B 782 PHE B 786 GLN B 817 SITE 2 AC8 5 PHE B 820 SITE 1 AC9 6 GLN B 699 LEU B 701 SER B 702 LEU B 704 SITE 2 AC9 6 ILE B 706 TYR B 709 CRYST1 47.257 125.651 153.854 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021161 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006500 0.00000