PDB Short entry for 3JYM HEADER ISOMERASE 22-SEP-09 3JYM TITLE CRYSTAL STRUCTURE OF THE 3 FKBP DOMAINS OF WHEAT FKBP73 CAVEAT 3JYM CHIRALITY ERROR AT CB CENTER OF RESIDUE 268 IN CHAIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FK506-BINDING PROTEIN (FKBP) FROM WHEAT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM AESTIVUM; SOURCE 3 ORGANISM_COMMON: WHEAT; SOURCE 4 ORGANISM_TAXID: 4565; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KBP- BINDING DOMAIN FIVE-STRANDED ANTI-PARALLEL -SHEET AND AN -HELIX KEYWDS 2 CROSSING THIS SHEET, STRUCTURAL GENOMICS, ISRAEL STRUCTURAL KEYWDS 3 PROTEOMICS CENTER, ISPC, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR O.DYM,A.BREIMAN,ISRAEL STRUCTURAL PROTEOMICS CENTER (ISPC) REVDAT 4 21-FEB-24 3JYM 1 REMARK REVDAT 3 21-JUL-10 3JYM 1 DBREF REVDAT 2 30-JUN-10 3JYM 1 JRNL REVDAT 1 16-JUN-10 3JYM 0 JRNL AUTH T.UNGER,O.DYM,S.ALBECK,Y.JACOBOVITCH,R.BERNEHIM,D.MAROM, JRNL AUTH 2 O.PISANTY,A.BREIMAN JRNL TITL CRYSTAL STRUCTURE OF THE THREE FK506 BINDING PROTEIN DOMAINS JRNL TITL 2 OF WHEAT FKBP73: EVIDENCE FOR A UNIQUE WFK73_2 DOMAIN JRNL REF J.STRUCT.FUNCT.GENOM. V. 11 113 2010 JRNL REFN ISSN 1345-711X JRNL PMID 20306145 JRNL DOI 10.1007/S10969-010-9085-8 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 34900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.274 REMARK 3 R VALUE (WORKING SET) : 0.270 REMARK 3 FREE R VALUE : 0.343 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1834 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.28 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.34 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 123 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4726 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.15000 REMARK 3 B22 (A**2) : 1.38000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.342 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.314 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.889 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.828 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4819 ; 0.035 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6498 ; 2.810 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 602 ;10.156 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 204 ;38.138 ;26.422 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 895 ;22.546 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.649 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 725 ; 0.232 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3552 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2034 ; 0.255 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3088 ; 0.330 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 164 ; 0.197 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.228 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.202 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3165 ; 1.689 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4862 ; 2.597 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1974 ; 4.000 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1636 ; 5.881 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3JYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-09. REMARK 100 THE DEPOSITION ID IS D_1000055323. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9334 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36745 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 46.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.05900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 21.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48400 REMARK 200 R SYM FOR SHELL (I) : 0.43300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PHASER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NANITRAT 0.1M BIS TRIS PH=6.5 20% REMARK 280 PEG 3500, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 15.50600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 15 REMARK 465 GLY A 16 REMARK 465 ASP A 17 REMARK 465 GLY A 18 REMARK 465 MET A 19 REMARK 465 GLY A 20 REMARK 465 ASP A 21 REMARK 465 PHE A 22 REMARK 465 GLY A 23 REMARK 465 GLY A 24 REMARK 465 ALA A 25 REMARK 465 GLU A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 MET A 30 REMARK 465 LYS A 31 REMARK 465 VAL A 32 REMARK 465 ILE A 38 REMARK 465 GLY A 39 REMARK 465 LYS A 40 REMARK 465 GLN A 41 REMARK 465 GLY A 42 REMARK 465 LEU A 43 REMARK 465 LYS A 44 REMARK 465 LYS A 45 REMARK 465 LYS A 46 REMARK 465 LEU A 47 REMARK 465 LEU A 48 REMARK 465 LYS A 49 REMARK 465 GLU A 50 REMARK 465 GLY A 51 REMARK 465 GLU A 52 REMARK 465 GLY A 53 REMARK 465 GLY A 69 REMARK 465 THR A 70 REMARK 465 LEU A 71 REMARK 465 LEU A 72 REMARK 465 ASP A 73 REMARK 465 GLY A 74 REMARK 465 LYS A 75 REMARK 465 LYS A 76 REMARK 465 PHE A 77 REMARK 465 ASP A 78 REMARK 465 SER A 79 REMARK 465 SER A 80 REMARK 465 ARG A 81 REMARK 465 ASP A 82 REMARK 465 ARG A 83 REMARK 465 ASP A 84 REMARK 465 ASP A 85 REMARK 465 THR A 86 REMARK 465 PRO A 119 REMARK 465 GLU A 120 REMARK 465 LEU A 121 REMARK 465 ALA A 122 REMARK 465 TYR A 123 REMARK 465 GLY A 124 REMARK 465 GLU A 125 REMARK 465 SER A 126 REMARK 465 GLY A 127 REMARK 465 SER A 128 REMARK 465 PRO A 129 REMARK 465 PRO A 130 REMARK 465 THR A 131 REMARK 465 ILE A 132 REMARK 465 PRO A 133 REMARK 465 ALA A 134 REMARK 465 ASN A 135 REMARK 465 ALA A 136 REMARK 465 THR A 137 REMARK 465 LYS A 387 REMARK 465 GLU A 388 REMARK 465 SER A 389 REMARK 465 TRP A 390 REMARK 465 ASP A 391 REMARK 465 MET B 15 REMARK 465 GLY B 16 REMARK 465 ASP B 17 REMARK 465 GLY B 18 REMARK 465 MET B 19 REMARK 465 GLY B 20 REMARK 465 ASP B 21 REMARK 465 PHE B 22 REMARK 465 GLY B 23 REMARK 465 GLY B 24 REMARK 465 ALA B 25 REMARK 465 GLU B 26 REMARK 465 GLY B 27 REMARK 465 PRO B 28 REMARK 465 GLY B 29 REMARK 465 MET B 30 REMARK 465 LYS B 31 REMARK 465 VAL B 32 REMARK 465 GLY B 39 REMARK 465 LYS B 40 REMARK 465 GLN B 41 REMARK 465 GLY B 42 REMARK 465 LEU B 43 REMARK 465 LYS B 44 REMARK 465 LYS B 45 REMARK 465 LYS B 46 REMARK 465 LEU B 47 REMARK 465 LEU B 48 REMARK 465 LYS B 49 REMARK 465 GLU B 50 REMARK 465 GLY B 51 REMARK 465 GLU B 52 REMARK 465 GLY B 53 REMARK 465 TRP B 54 REMARK 465 THR B 70 REMARK 465 LEU B 71 REMARK 465 LEU B 72 REMARK 465 ASP B 73 REMARK 465 GLY B 74 REMARK 465 LYS B 75 REMARK 465 LYS B 76 REMARK 465 PHE B 77 REMARK 465 ASP B 78 REMARK 465 SER B 79 REMARK 465 SER B 80 REMARK 465 ARG B 81 REMARK 465 ASP B 82 REMARK 465 ARG B 83 REMARK 465 ASP B 84 REMARK 465 ASP B 85 REMARK 465 THR B 86 REMARK 465 PRO B 119 REMARK 465 GLU B 120 REMARK 465 LEU B 121 REMARK 465 ALA B 122 REMARK 465 TYR B 123 REMARK 465 GLY B 124 REMARK 465 GLU B 125 REMARK 465 SER B 126 REMARK 465 GLY B 127 REMARK 465 SER B 128 REMARK 465 PRO B 129 REMARK 465 PRO B 130 REMARK 465 THR B 131 REMARK 465 LYS B 387 REMARK 465 GLU B 388 REMARK 465 SER B 389 REMARK 465 TRP B 390 REMARK 465 ASP B 391 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP B 273 CD LYS B 275 1.90 REMARK 500 O VAL A 65 N PHE A 87 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 209 CB CYS A 209 SG -0.195 REMARK 500 GLY A 244 N GLY A 244 CA 0.112 REMARK 500 ASP A 273 CB ASP A 273 CG -0.129 REMARK 500 GLU A 283 CB GLU A 283 CG -0.135 REMARK 500 TYR A 355 CD1 TYR A 355 CE1 -0.098 REMARK 500 TYR A 355 CE2 TYR A 355 CD2 -0.112 REMARK 500 GLU A 377 CD GLU A 377 OE1 -0.068 REMARK 500 CYS B 209 CB CYS B 209 SG -0.200 REMARK 500 GLU B 379 CD GLU B 379 OE1 -0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 231 C - N - CA ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG A 240 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 240 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLY A 247 N - CA - C ANGL. DEV. = -20.3 DEGREES REMARK 500 LYS B 88 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 ASP B 156 CB - CG - OD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 PRO B 231 C - N - CA ANGL. DEV. = 10.7 DEGREES REMARK 500 GLY B 244 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 ASP B 306 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 316 CB - CG - OD1 ANGL. DEV. = -6.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 59 121.11 -18.19 REMARK 500 LYS A 88 101.32 174.11 REMARK 500 GLN A 93 -130.81 -86.44 REMARK 500 ILE A 97 108.39 -42.67 REMARK 500 LYS A 98 -14.56 -41.06 REMARK 500 LYS A 109 -88.38 -48.56 REMARK 500 LEU A 145 -80.02 -86.48 REMARK 500 LYS A 155 50.33 71.61 REMARK 500 ASP A 156 -15.54 -153.98 REMARK 500 LYS A 169 -131.92 70.92 REMARK 500 TRP A 170 -13.46 -148.44 REMARK 500 LEU A 208 -78.83 67.96 REMARK 500 ALA A 243 -83.08 -118.01 REMARK 500 PRO A 251 132.43 -21.27 REMARK 500 TYR A 287 -53.16 68.05 REMARK 500 GLU A 327 11.40 -144.72 REMARK 500 ALA A 356 -113.47 -125.05 REMARK 500 GLN A 364 -121.00 -122.29 REMARK 500 GLU B 34 -162.98 -166.58 REMARK 500 GLU B 37 159.41 -45.45 REMARK 500 ALA B 113 128.75 -178.27 REMARK 500 ALA B 134 161.98 50.76 REMARK 500 ASN B 135 55.26 -36.57 REMARK 500 SER B 146 170.88 159.51 REMARK 500 LYS B 155 26.85 88.46 REMARK 500 ASP B 156 -18.50 -158.82 REMARK 500 LYS B 165 112.27 -162.60 REMARK 500 LYS B 169 -131.15 43.40 REMARK 500 TRP B 170 -34.59 -130.90 REMARK 500 LEU B 208 -74.71 69.43 REMARK 500 MET B 238 -28.52 -35.60 REMARK 500 ALA B 243 -170.60 -63.68 REMARK 500 PRO B 251 124.67 -24.44 REMARK 500 ASP B 273 -32.84 -39.25 REMARK 500 UNK B 284 -150.28 -93.00 REMARK 500 TYR B 287 -94.45 107.64 REMARK 500 GLU B 327 2.38 -154.99 REMARK 500 ALA B 356 -119.46 -137.75 REMARK 500 GLN B 364 -132.69 -127.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 245 GLY A 246 142.67 REMARK 500 PHE B 87 LYS B 88 -32.18 REMARK 500 LYS B 155 ASP B 156 -126.18 REMARK 500 ALA B 243 GLY B 244 39.45 REMARK 500 GLY B 286 TYR B 287 -34.94 REMARK 500 REMARK 500 REMARK: NULL DBREF 3JYM A 15 391 UNP Q43207 FKB70_WHEAT 15 391 DBREF 3JYM B 15 391 UNP Q43207 FKB70_WHEAT 15 391 SEQRES 1 A 377 MET GLY ASP GLY MET GLY ASP PHE GLY GLY ALA GLU GLY SEQRES 2 A 377 PRO GLY MET LYS VAL GLY GLU GLU ASN GLU ILE GLY LYS SEQRES 3 A 377 GLN GLY LEU LYS LYS LYS LEU LEU LYS GLU GLY GLU GLY SEQRES 4 A 377 TRP ASP THR PRO GLU VAL GLY ASP GLU VAL GLU VAL HIS SEQRES 5 A 377 TYR THR GLY THR LEU LEU ASP GLY LYS LYS PHE ASP SER SEQRES 6 A 377 SER ARG ASP ARG ASP ASP THR PHE LYS PHE LYS LEU GLY SEQRES 7 A 377 GLN GLY GLN VAL ILE LYS GLY TRP ASP GLN GLY ILE LYS SEQRES 8 A 377 THR MET LYS LYS GLY GLU ASN ALA LEU PHE THR ILE PRO SEQRES 9 A 377 PRO GLU LEU ALA TYR GLY GLU SER GLY SER PRO PRO THR SEQRES 10 A 377 ILE PRO ALA ASN ALA THR LEU GLN PHE ASP VAL GLU LEU SEQRES 11 A 377 LEU SER TRP THR SER VAL ARG ASP ILE ALA LYS ASP GLY SEQRES 12 A 377 GLY ILE PHE LYS LYS ILE LEU LYS GLU GLY ASP LYS TRP SEQRES 13 A 377 GLU ASN PRO LYS ASP PRO ASP GLU VAL PHE VAL LYS TYR SEQRES 14 A 377 GLU ALA ARG LEU GLU ASP GLY THR VAL VAL SER LYS SER SEQRES 15 A 377 GLU GLY VAL GLU PHE THR VAL LYS ASP GLY HIS LEU CYS SEQRES 16 A 377 PRO ALA LEU ALA LYS ALA VAL LYS THR MET LYS LYS GLY SEQRES 17 A 377 GLU LYS VAL LEU LEU ALA VAL LYS PRO GLN TYR GLY PHE SEQRES 18 A 377 GLY GLU MET GLY ARG PRO ALA ALA GLY GLU GLY GLY ALA SEQRES 19 A 377 VAL PRO PRO ASN ALA SER LEU VAL ILE ASP LEU GLU LEU SEQRES 20 A 377 VAL SER TRP LYS THR VAL THR GLU ILE GLY ASP ASP LYS SEQRES 21 A 377 LYS ILE LEU LYS LYS VAL LEU LYS GLU UNK GLU GLY TYR SEQRES 22 A 377 GLU ARG PRO ASN GLU GLY ALA VAL VAL THR VAL LYS ILE SEQRES 23 A 377 THR GLY LYS LEU GLN ASP GLY THR VAL PHE LEU LYS LYS SEQRES 24 A 377 GLY HIS ASP GLU GLN GLU PRO PHE GLU PHE LYS THR ASP SEQRES 25 A 377 GLU GLU ALA VAL ILE GLU GLY LEU ASP ARG ALA VAL LEU SEQRES 26 A 377 ASN MET LYS LYS GLY GLU VAL ALA LEU VAL THR ILE PRO SEQRES 27 A 377 PRO GLU TYR ALA TYR GLY SER THR GLU SER LYS GLN ASP SEQRES 28 A 377 ALA ILE VAL PRO PRO ASN SER THR VAL ILE TYR GLU VAL SEQRES 29 A 377 GLU LEU VAL SER PHE VAL LYS ASP LYS GLU SER TRP ASP SEQRES 1 B 377 MET GLY ASP GLY MET GLY ASP PHE GLY GLY ALA GLU GLY SEQRES 2 B 377 PRO GLY MET LYS VAL GLY GLU GLU ASN GLU ILE GLY LYS SEQRES 3 B 377 GLN GLY LEU LYS LYS LYS LEU LEU LYS GLU GLY GLU GLY SEQRES 4 B 377 TRP ASP THR PRO GLU VAL GLY ASP GLU VAL GLU VAL HIS SEQRES 5 B 377 TYR THR GLY THR LEU LEU ASP GLY LYS LYS PHE ASP SER SEQRES 6 B 377 SER ARG ASP ARG ASP ASP THR PHE LYS PHE LYS LEU GLY SEQRES 7 B 377 GLN GLY GLN VAL ILE LYS GLY TRP ASP GLN GLY ILE LYS SEQRES 8 B 377 THR MET LYS LYS GLY GLU ASN ALA LEU PHE THR ILE PRO SEQRES 9 B 377 PRO GLU LEU ALA TYR GLY GLU SER GLY SER PRO PRO THR SEQRES 10 B 377 ILE PRO ALA ASN ALA THR LEU GLN PHE ASP VAL GLU LEU SEQRES 11 B 377 LEU SER TRP THR SER VAL ARG ASP ILE ALA LYS ASP GLY SEQRES 12 B 377 GLY ILE PHE LYS LYS ILE LEU LYS GLU GLY ASP LYS TRP SEQRES 13 B 377 GLU ASN PRO LYS ASP PRO ASP GLU VAL PHE VAL LYS TYR SEQRES 14 B 377 GLU ALA ARG LEU GLU ASP GLY THR VAL VAL SER LYS SER SEQRES 15 B 377 GLU GLY VAL GLU PHE THR VAL LYS ASP GLY HIS LEU CYS SEQRES 16 B 377 PRO ALA LEU ALA LYS ALA VAL LYS THR MET LYS LYS GLY SEQRES 17 B 377 GLU LYS VAL LEU LEU ALA VAL LYS PRO GLN TYR GLY PHE SEQRES 18 B 377 GLY GLU MET GLY ARG PRO ALA ALA GLY GLU GLY GLY ALA SEQRES 19 B 377 VAL PRO PRO ASN ALA SER LEU VAL ILE ASP LEU GLU LEU SEQRES 20 B 377 VAL SER TRP LYS THR VAL THR GLU ILE GLY ASP ASP LYS SEQRES 21 B 377 LYS ILE LEU LYS LYS VAL LEU LYS GLU UNK GLU GLY TYR SEQRES 22 B 377 GLU ARG PRO ASN GLU GLY ALA VAL VAL THR VAL LYS ILE SEQRES 23 B 377 THR GLY LYS LEU GLN ASP GLY THR VAL PHE LEU LYS LYS SEQRES 24 B 377 GLY HIS ASP GLU GLN GLU PRO PHE GLU PHE LYS THR ASP SEQRES 25 B 377 GLU GLU ALA VAL ILE GLU GLY LEU ASP ARG ALA VAL LEU SEQRES 26 B 377 ASN MET LYS LYS GLY GLU VAL ALA LEU VAL THR ILE PRO SEQRES 27 B 377 PRO GLU TYR ALA TYR GLY SER THR GLU SER LYS GLN ASP SEQRES 28 B 377 ALA ILE VAL PRO PRO ASN SER THR VAL ILE TYR GLU VAL SEQRES 29 B 377 GLU LEU VAL SER PHE VAL LYS ASP LYS GLU SER TRP ASP HELIX 1 1 GLY A 99 MET A 107 5 9 HELIX 2 2 LYS A 204 GLY A 206 5 3 HELIX 3 3 CYS A 209 LYS A 217 1 9 HELIX 4 4 PRO A 231 GLY A 234 5 4 HELIX 5 5 ILE A 331 ASN A 340 1 10 HELIX 6 6 PRO A 352 ALA A 356 5 5 HELIX 7 7 ILE B 97 LYS B 105 1 9 HELIX 8 8 LYS B 204 GLY B 206 5 3 HELIX 9 9 CYS B 209 LYS B 217 1 9 HELIX 10 10 PRO B 231 GLY B 234 5 4 HELIX 11 11 ILE B 331 LEU B 339 1 9 HELIX 12 12 PRO B 352 ALA B 356 5 5 SHEET 1 A 5 GLU A 34 ASN A 36 0 SHEET 2 A 5 ASN A 112 THR A 116 -1 O THR A 116 N GLU A 34 SHEET 3 A 5 GLN A 139 THR A 148 -1 O VAL A 142 N ALA A 113 SHEET 4 A 5 GLU A 62 HIS A 66 -1 N HIS A 66 O GLU A 143 SHEET 5 A 5 PHE A 89 LYS A 90 -1 O PHE A 89 N VAL A 63 SHEET 1 B 6 VAL A 150 ASP A 152 0 SHEET 2 B 6 ILE A 159 LYS A 165 -1 O LYS A 161 N ARG A 151 SHEET 3 B 6 LYS A 224 VAL A 229 -1 O LEU A 226 N LYS A 162 SHEET 4 B 6 LEU A 255 LYS A 265 -1 O LEU A 255 N VAL A 229 SHEET 5 B 6 GLU A 178 LEU A 187 -1 N ARG A 186 O VAL A 256 SHEET 6 B 6 VAL A 192 THR A 202 -1 O SER A 196 N TYR A 183 SHEET 1 C 6 VAL A 267 ILE A 270 0 SHEET 2 C 6 ILE A 276 LYS A 282 -1 O ILE A 276 N ILE A 270 SHEET 3 C 6 VAL A 346 ILE A 351 -1 O LEU A 348 N LYS A 279 SHEET 4 C 6 VAL A 374 VAL A 384 -1 O VAL A 378 N ALA A 347 SHEET 5 C 6 VAL A 295 LYS A 303 -1 N THR A 301 O GLU A 377 SHEET 6 C 6 VAL A 309 LYS A 313 -1 O LYS A 313 N ILE A 300 SHEET 1 D 6 VAL A 267 ILE A 270 0 SHEET 2 D 6 ILE A 276 LYS A 282 -1 O ILE A 276 N ILE A 270 SHEET 3 D 6 VAL A 346 ILE A 351 -1 O LEU A 348 N LYS A 279 SHEET 4 D 6 VAL A 374 VAL A 384 -1 O VAL A 378 N ALA A 347 SHEET 5 D 6 VAL A 295 LYS A 303 -1 N THR A 301 O GLU A 377 SHEET 6 D 6 PHE A 321 LYS A 324 -1 O PHE A 323 N VAL A 296 SHEET 1 E 2 SER A 362 LYS A 363 0 SHEET 2 E 2 ILE A 367 VAL A 368 -1 O VAL A 368 N SER A 362 SHEET 1 F 5 GLU B 37 ILE B 38 0 SHEET 2 F 5 ASN B 112 ILE B 117 -1 O ASN B 112 N ILE B 38 SHEET 3 F 5 LEU B 138 THR B 148 -1 O PHE B 140 N PHE B 115 SHEET 4 F 5 GLU B 62 THR B 68 -1 N HIS B 66 O GLU B 143 SHEET 5 F 5 PHE B 89 LYS B 90 -1 O PHE B 89 N VAL B 63 SHEET 1 G 6 VAL B 150 ASP B 152 0 SHEET 2 G 6 ILE B 159 LYS B 165 -1 O LYS B 161 N ARG B 151 SHEET 3 G 6 LYS B 224 VAL B 229 -1 O LEU B 226 N LYS B 162 SHEET 4 G 6 LEU B 255 LYS B 265 -1 O LEU B 255 N VAL B 229 SHEET 5 G 6 GLU B 178 LEU B 187 -1 N ARG B 186 O VAL B 256 SHEET 6 G 6 VAL B 192 THR B 202 -1 O SER B 194 N ALA B 185 SHEET 1 H 6 VAL B 267 ILE B 270 0 SHEET 2 H 6 ILE B 276 LYS B 282 -1 O ILE B 276 N ILE B 270 SHEET 3 H 6 VAL B 346 ILE B 351 -1 O VAL B 346 N LEU B 281 SHEET 4 H 6 VAL B 374 VAL B 384 -1 O VAL B 374 N ILE B 351 SHEET 5 H 6 VAL B 295 LEU B 304 -1 N VAL B 295 O VAL B 384 SHEET 6 H 6 VAL B 309 LYS B 313 -1 O PHE B 310 N GLY B 302 SHEET 1 I 6 VAL B 267 ILE B 270 0 SHEET 2 I 6 ILE B 276 LYS B 282 -1 O ILE B 276 N ILE B 270 SHEET 3 I 6 VAL B 346 ILE B 351 -1 O VAL B 346 N LEU B 281 SHEET 4 I 6 VAL B 374 VAL B 384 -1 O VAL B 374 N ILE B 351 SHEET 5 I 6 VAL B 295 LEU B 304 -1 N VAL B 295 O VAL B 384 SHEET 6 I 6 PHE B 321 LYS B 324 -1 O PHE B 321 N VAL B 298 SHEET 1 J 2 SER B 362 LYS B 363 0 SHEET 2 J 2 ILE B 367 VAL B 368 -1 O VAL B 368 N SER B 362 CISPEP 1 PHE A 87 LYS A 88 0 -15.24 CISPEP 2 GLY A 244 GLU A 245 0 4.84 CISPEP 3 GLU B 245 GLY B 246 0 4.85 CRYST1 186.956 31.012 68.978 90.00 93.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005349 0.000000 0.000336 0.00000 SCALE2 0.000000 0.032246 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014526 0.00000