PDB Short entry for 3K67 HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-OCT-09 3K67 TITLE CRYSTAL STRUCTURE OF PROTEIN AF1124 FROM ARCHAEOGLOBUS FULGIDUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE DEHYDRATASE AF1124; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF_1124; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS HYPOTHETICAL PROTEIN AF1124, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,T.SKARINA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 2 06-SEP-23 3K67 1 REMARK REVDAT 1 20-OCT-09 3K67 0 SPRSDE 20-OCT-09 3K67 2B3N JRNL AUTH C.CHANG,T.SKARINA,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PROTEIN AF1124 FROM ARCHAEOGLOBUS JRNL TITL 2 FULGIDUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 90428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4536 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6011 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 332 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.40000 REMARK 3 B33 (A**2) : -0.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.043 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.020 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.956 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2765 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3781 ; 1.592 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 6.067 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;22.150 ;23.982 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 535 ;11.964 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.290 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 426 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2089 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1706 ; 1.586 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2811 ; 2.517 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1059 ; 3.599 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 942 ; 5.511 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2765 ; 1.578 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4172 13.5063 20.4286 REMARK 3 T TENSOR REMARK 3 T11: 0.0543 T22: 0.0471 REMARK 3 T33: 0.0601 T12: -0.0270 REMARK 3 T13: 0.0173 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 0.4880 L22: 0.3466 REMARK 3 L33: 1.6374 L12: -0.2830 REMARK 3 L13: -0.0909 L23: 0.5878 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: -0.0915 S13: 0.1128 REMARK 3 S21: -0.0488 S22: 0.0887 S23: -0.0886 REMARK 3 S31: -0.1666 S32: 0.1495 S33: -0.0961 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 49 REMARK 3 RESIDUE RANGE : A 83 A 159 REMARK 3 ORIGIN FOR THE GROUP (A): 7.3594 -3.4300 9.9738 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0122 REMARK 3 T33: 0.0196 T12: -0.0031 REMARK 3 T13: 0.0025 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.4049 L22: 0.3857 REMARK 3 L33: 0.5333 L12: 0.0630 REMARK 3 L13: 0.0248 L23: -0.0587 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: 0.0104 S13: -0.0499 REMARK 3 S21: -0.0311 S22: 0.0388 S23: -0.0418 REMARK 3 S31: -0.0011 S32: 0.0412 S33: -0.0487 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 82 REMARK 3 ORIGIN FOR THE GROUP (A): -6.3192 -1.1515 29.0095 REMARK 3 T TENSOR REMARK 3 T11: 0.0301 T22: 0.0598 REMARK 3 T33: 0.0064 T12: -0.0029 REMARK 3 T13: 0.0072 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.3031 L22: 0.9105 REMARK 3 L33: 0.6602 L12: 0.3273 REMARK 3 L13: 0.2886 L23: -0.0390 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: -0.1001 S13: -0.0025 REMARK 3 S21: 0.0697 S22: -0.0014 S23: 0.0252 REMARK 3 S31: -0.0182 S32: -0.1437 S33: -0.0202 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): -8.8950 12.0396 27.6797 REMARK 3 T TENSOR REMARK 3 T11: 0.0572 T22: 0.0804 REMARK 3 T33: 0.0248 T12: 0.0226 REMARK 3 T13: 0.0211 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.3671 L22: 1.3354 REMARK 3 L33: 0.6673 L12: 0.0693 REMARK 3 L13: 0.3417 L23: 0.3378 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: -0.1391 S13: 0.0527 REMARK 3 S21: 0.1082 S22: -0.0005 S23: 0.0777 REMARK 3 S31: -0.0853 S32: -0.1227 S33: 0.0295 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 49 REMARK 3 RESIDUE RANGE : B 83 B 159 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6660 0.4721 11.8452 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0257 REMARK 3 T33: 0.0242 T12: 0.0018 REMARK 3 T13: -0.0035 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.6138 L22: 0.3964 REMARK 3 L33: 0.2426 L12: 0.0983 REMARK 3 L13: -0.0291 L23: 0.0877 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.0114 S13: -0.0446 REMARK 3 S21: -0.0124 S22: -0.0290 S23: 0.0498 REMARK 3 S31: -0.0249 S32: -0.0424 S33: 0.0099 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 50 B 82 REMARK 3 ORIGIN FOR THE GROUP (A): 4.6335 15.0855 8.8923 REMARK 3 T TENSOR REMARK 3 T11: 0.0481 T22: 0.0259 REMARK 3 T33: 0.0205 T12: -0.0128 REMARK 3 T13: 0.0000 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 1.0900 L22: 0.2664 REMARK 3 L33: 1.1251 L12: -0.1480 REMARK 3 L13: 0.0821 L23: -0.2767 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.0958 S13: 0.1179 REMARK 3 S21: 0.0257 S22: 0.0106 S23: -0.0343 REMARK 3 S31: -0.0946 S32: 0.0791 S33: 0.0085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90451 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 57.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 6.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ID 2B3M (SEL-MET DERIVATIVE) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM PHOSPHATE, TRIS HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 27.66000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLY A 3 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLY B 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 6 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 109 O HOH B 185 1.98 REMARK 500 O HOH A 533 O HOH B 604 2.02 REMARK 500 OD2 ASP B 69 O HOH B 302 2.09 REMARK 500 NZ LYS B 31 O HOH B 604 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 117 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 5 -77.21 -38.70 REMARK 500 GLU A 33 -168.28 -119.83 REMARK 500 LYS A 133 -119.02 53.79 REMARK 500 LYS B 133 -115.27 56.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5830 RELATED DB: TARGETDB DBREF 3K67 A 1 159 UNP O29141 O29141_ARCFU 1 159 DBREF 3K67 B 1 159 UNP O29141 O29141_ARCFU 1 159 SEQRES 1 A 159 MET GLY GLY GLY GLU VAL LYS MET MET SER LEU LEU GLU SEQRES 2 A 159 GLU MET LYS GLY ILE TYR SER LYS LYS GLY GLY LYS VAL SEQRES 3 A 159 LYS PRO PHE GLU LYS PHE GLU GLY GLU LEU LYS GLU GLY SEQRES 4 A 159 TYR ARG PHE GLU TYR GLU LYS LYS LEU CYS GLU ILE ASP SEQRES 5 A 159 VAL ALA MET PHE GLY LEU ILE SER GLY ASP LEU ASN PRO SEQRES 6 A 159 VAL HIS PHE ASP GLU ASP PHE ALA SER LYS THR ARG PHE SEQRES 7 A 159 GLY GLY ARG VAL VAL HIS GLY MET LEU THR THR SER LEU SEQRES 8 A 159 VAL SER ALA ALA VAL ALA ARG LEU PRO GLY THR VAL VAL SEQRES 9 A 159 LEU LEU GLU GLN SER PHE ARG TYR THR SER PRO VAL ARG SEQRES 10 A 159 ILE GLY ASP VAL VAL ARG VAL GLU GLY VAL VAL SER GLY SEQRES 11 A 159 VAL GLU LYS ASN ARG TYR THR ILE ASP VAL LYS CYS TYR SEQRES 12 A 159 THR GLY ASP LYS VAL VAL ALA GLU GLY VAL VAL LYS VAL SEQRES 13 A 159 LEU ILE TRP SEQRES 1 B 159 MET GLY GLY GLY GLU VAL LYS MET MET SER LEU LEU GLU SEQRES 2 B 159 GLU MET LYS GLY ILE TYR SER LYS LYS GLY GLY LYS VAL SEQRES 3 B 159 LYS PRO PHE GLU LYS PHE GLU GLY GLU LEU LYS GLU GLY SEQRES 4 B 159 TYR ARG PHE GLU TYR GLU LYS LYS LEU CYS GLU ILE ASP SEQRES 5 B 159 VAL ALA MET PHE GLY LEU ILE SER GLY ASP LEU ASN PRO SEQRES 6 B 159 VAL HIS PHE ASP GLU ASP PHE ALA SER LYS THR ARG PHE SEQRES 7 B 159 GLY GLY ARG VAL VAL HIS GLY MET LEU THR THR SER LEU SEQRES 8 B 159 VAL SER ALA ALA VAL ALA ARG LEU PRO GLY THR VAL VAL SEQRES 9 B 159 LEU LEU GLU GLN SER PHE ARG TYR THR SER PRO VAL ARG SEQRES 10 B 159 ILE GLY ASP VAL VAL ARG VAL GLU GLY VAL VAL SER GLY SEQRES 11 B 159 VAL GLU LYS ASN ARG TYR THR ILE ASP VAL LYS CYS TYR SEQRES 12 B 159 THR GLY ASP LYS VAL VAL ALA GLU GLY VAL VAL LYS VAL SEQRES 13 B 159 LEU ILE TRP HET PO4 A 501 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *364(H2 O) HELIX 1 1 GLY A 4 LYS A 22 1 19 HELIX 2 2 CYS A 49 GLY A 61 1 13 HELIX 3 3 ASN A 64 PHE A 68 5 5 HELIX 4 4 ASP A 69 THR A 76 1 8 HELIX 5 5 HIS A 84 ARG A 98 1 15 HELIX 6 6 GLY B 4 LYS B 22 1 19 HELIX 7 7 CYS B 49 GLY B 61 1 13 HELIX 8 8 ASN B 64 ASP B 69 1 6 HELIX 9 9 ASP B 69 LYS B 75 1 7 HELIX 10 10 HIS B 84 ARG B 98 1 15 SHEET 1 A10 ARG A 41 LYS A 47 0 SHEET 2 A10 VAL A 121 GLU A 132 -1 O VAL A 124 N TYR A 44 SHEET 3 A10 ARG A 135 THR A 144 -1 O LYS A 141 N GLU A 125 SHEET 4 A10 LYS A 147 TRP A 159 -1 O VAL A 149 N CYS A 142 SHEET 5 A10 THR A 102 TYR A 112 -1 N VAL A 104 O LEU A 157 SHEET 6 A10 THR B 102 TYR B 112 -1 O LEU B 106 N TYR A 112 SHEET 7 A10 LYS B 147 TRP B 159 -1 O LEU B 157 N VAL B 104 SHEET 8 A10 ARG B 135 THR B 144 -1 N ILE B 138 O VAL B 154 SHEET 9 A10 VAL B 121 GLU B 132 -1 N GLU B 125 O LYS B 141 SHEET 10 A10 ARG B 41 LYS B 47 -1 N TYR B 44 O VAL B 124 SITE 1 AC1 4 GLU A 132 LYS A 155 HOH A 532 HOH A 546 CRYST1 44.973 55.320 69.121 90.00 93.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022236 0.000000 0.001306 0.00000 SCALE2 0.000000 0.018077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014492 0.00000