PDB Short entry for 3K81 HEADER IMMUNE SYSTEM, RNA BINDING PROTEIN 13-OCT-09 3K81 TITLE STRUCTURE OF THE CENTRAL INTERACTION PROTEIN FROM THE TRYPANOSOMA TITLE 2 BRUCEI EDITOSOME IN COMPLEX WITH SINGLE DOMAIN ANTIBODIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MP18 RNA EDITING COMPLEX PROTEIN; COMPND 3 CHAIN: C, D; COMPND 4 FRAGMENT: KREPA6; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SINGLE STRAND ANTIBODY VHH DOMAIN; COMPND 8 CHAIN: A, B; COMPND 9 FRAGMENT: SINGLE DOMAIN ANTIBODY VHH; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: KREPA6, TB10.70.2090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSF; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 12 ORGANISM_TAXID: 9844; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 EXPRESSION_SYSTEM_PLASMID: PRSF KEYWDS KREPA6, VHH, SINGLE DOMAIN ANTIBODY, IMMUNE SYSTEM, RNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.-J.PARK,W.HOL REVDAT 3 06-SEP-23 3K81 1 REMARK REVDAT 2 06-APR-11 3K81 1 JRNL REVDAT 1 17-NOV-10 3K81 0 JRNL AUTH M.WU,Y.J.PARK,E.PARDON,S.TURLEY,A.HAYHURST,J.DENG, JRNL AUTH 2 J.STEYAERT,W.G.HOL JRNL TITL STRUCTURES OF A KEY INTERACTION PROTEIN FROM THE TRYPANOSOMA JRNL TITL 2 BRUCEI EDITOSOME IN COMPLEX WITH SINGLE DOMAIN ANTIBODIES. JRNL REF J.STRUCT.BIOL. V. 174 124 2011 JRNL REFN ISSN 1047-8477 JRNL PMID 20969962 JRNL DOI 10.1016/J.JSB.2010.10.007 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 6363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.269 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.320 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4689 - 4.2823 1.00 3323 165 0.2627 0.3106 REMARK 3 2 4.2823 - 3.4001 0.84 2739 136 0.2747 0.3387 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 114.0 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.730 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3312 REMARK 3 ANGLE : 0.544 4507 REMARK 3 CHIRALITY : 0.038 521 REMARK 3 PLANARITY : 0.002 592 REMARK 3 DIHEDRAL : 13.025 1110 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.3208 11.4461 -23.0129 REMARK 3 T TENSOR REMARK 3 T11: 0.2762 T22: 0.0517 REMARK 3 T33: 0.1592 T12: 0.0303 REMARK 3 T13: 0.0143 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 1.1267 L22: 0.6707 REMARK 3 L33: 1.9416 L12: -0.5763 REMARK 3 L13: -0.0968 L23: -1.2693 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: -0.1430 S13: -0.1315 REMARK 3 S21: -0.3351 S22: -0.0853 S23: 0.0896 REMARK 3 S31: 0.0288 S32: 0.1355 S33: -0.0547 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K81 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6402 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : 0.11200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : 0.33800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3K7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.1M CITRATE PH.4.2, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K, PH 4.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.01500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.30250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.01500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.30250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 ALA C 3 REMARK 465 LEU C 4 REMARK 465 THR C 5 REMARK 465 SER C 6 REMARK 465 ARG C 7 REMARK 465 ARG C 8 REMARK 465 LEU C 9 REMARK 465 LEU C 10 REMARK 465 LEU C 11 REMARK 465 GLN C 12 REMARK 465 GLN C 13 REMARK 465 THR C 14 REMARK 465 PHE C 15 REMARK 465 MET C 16 REMARK 465 ARG C 17 REMARK 465 CYS C 18 REMARK 465 CYS C 19 REMARK 465 ASP C 55 REMARK 465 THR C 56 REMARK 465 THR C 57 REMARK 465 HIS C 58 REMARK 465 PRO C 59 REMARK 465 THR C 60 REMARK 465 GLN C 61 REMARK 465 GLU C 62 REMARK 465 ASP C 133 REMARK 465 ARG C 134 REMARK 465 ARG C 135 REMARK 465 THR C 136 REMARK 465 VAL C 137 REMARK 465 PRO C 138 REMARK 465 ALA C 139 REMARK 465 ALA C 140 REMARK 465 VAL C 141 REMARK 465 ASN C 142 REMARK 465 PRO C 143 REMARK 465 ALA C 144 REMARK 465 VAL C 145 REMARK 465 GLU C 146 REMARK 465 ASP C 147 REMARK 465 ILE C 148 REMARK 465 LYS C 149 REMARK 465 SER C 150 REMARK 465 GLU C 151 REMARK 465 LYS C 152 REMARK 465 GLU C 153 REMARK 465 GLY C 154 REMARK 465 SER C 155 REMARK 465 GLY C 156 REMARK 465 GLY C 157 REMARK 465 ASP C 158 REMARK 465 GLN C 159 REMARK 465 SER C 160 REMARK 465 GLY C 161 REMARK 465 VAL C 162 REMARK 465 PRO C 163 REMARK 465 SER C 164 REMARK 465 MET D 1 REMARK 465 LEU D 2 REMARK 465 ALA D 3 REMARK 465 LEU D 4 REMARK 465 THR D 5 REMARK 465 SER D 6 REMARK 465 ARG D 7 REMARK 465 ARG D 8 REMARK 465 LEU D 9 REMARK 465 LEU D 10 REMARK 465 LEU D 11 REMARK 465 GLN D 12 REMARK 465 GLN D 13 REMARK 465 THR D 14 REMARK 465 PHE D 15 REMARK 465 MET D 16 REMARK 465 ARG D 17 REMARK 465 CYS D 18 REMARK 465 CYS D 19 REMARK 465 LYS D 20 REMARK 465 THR D 57 REMARK 465 HIS D 58 REMARK 465 PRO D 59 REMARK 465 THR D 60 REMARK 465 GLN D 61 REMARK 465 GLY D 132 REMARK 465 ASP D 133 REMARK 465 ARG D 134 REMARK 465 ARG D 135 REMARK 465 THR D 136 REMARK 465 VAL D 137 REMARK 465 PRO D 138 REMARK 465 ALA D 139 REMARK 465 ALA D 140 REMARK 465 VAL D 141 REMARK 465 ASN D 142 REMARK 465 PRO D 143 REMARK 465 ALA D 144 REMARK 465 VAL D 145 REMARK 465 GLU D 146 REMARK 465 ASP D 147 REMARK 465 ILE D 148 REMARK 465 LYS D 149 REMARK 465 SER D 150 REMARK 465 GLU D 151 REMARK 465 LYS D 152 REMARK 465 GLU D 153 REMARK 465 GLY D 154 REMARK 465 SER D 155 REMARK 465 GLY D 156 REMARK 465 GLY D 157 REMARK 465 ASP D 158 REMARK 465 GLN D 159 REMARK 465 SER D 160 REMARK 465 GLY D 161 REMARK 465 VAL D 162 REMARK 465 PRO D 163 REMARK 465 SER D 164 REMARK 465 GLU A 1 REMARK 465 SER A 120 REMARK 465 SER A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 GLU B 1 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 20 CG CD CE NZ REMARK 470 SER C 21 OG REMARK 470 VAL C 39 CG1 CG2 REMARK 470 TYR C 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 41 CG CD OE1 OE2 REMARK 470 VAL C 63 CG1 CG2 REMARK 470 VAL C 64 CG1 CG2 REMARK 470 GLU C 66 CG CD OE1 OE2 REMARK 470 SER C 102 OG REMARK 470 GLN C 104 CG CD OE1 NE2 REMARK 470 LEU C 105 CG CD1 CD2 REMARK 470 GLU C 106 CG CD OE1 OE2 REMARK 470 SER C 108 OG REMARK 470 ASN C 110 CG OD1 ND2 REMARK 470 LYS C 111 CG CD CE NZ REMARK 470 HIS C 112 CG ND1 CD2 CE1 NE2 REMARK 470 PHE C 113 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER D 21 OG REMARK 470 VAL D 39 CG1 CG2 REMARK 470 TYR D 40 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 41 CG CD OE1 OE2 REMARK 470 ILE D 54 CG1 CG2 CD1 REMARK 470 ASP D 55 CG OD1 OD2 REMARK 470 THR D 56 OG1 CG2 REMARK 470 GLU D 62 CG CD OE1 OE2 REMARK 470 VAL D 63 CG1 CG2 REMARK 470 VAL D 64 CG1 CG2 REMARK 470 GLN D 104 CG CD OE1 NE2 REMARK 470 LEU D 105 CG CD1 CD2 REMARK 470 GLU D 106 CG CD OE1 OE2 REMARK 470 SER D 108 OG REMARK 470 ASN D 110 CG OD1 ND2 REMARK 470 LYS D 111 CG CD CE NZ REMARK 470 TYR D 114 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 HIS D 124 CG ND1 CD2 CE1 NE2 REMARK 470 HIS D 131 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 19 CG CD NE CZ NH1 NH2 REMARK 470 SER A 31 OG REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLN A 44 CG CD OE1 NE2 REMARK 470 ASN A 98 CG OD1 ND2 REMARK 470 LEU A 99 CG CD1 CD2 REMARK 470 GLN A 100 CG CD OE1 NE2 REMARK 470 THR A 101 OG1 CG2 REMARK 470 THR A 103 OG1 CG2 REMARK 470 LEU A 104 CG CD1 CD2 REMARK 470 SER A 105 OG REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 109 CG CD1 CD2 REMARK 470 TYR A 110 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 19 CG CD NE CZ NH1 NH2 REMARK 470 SER B 31 OG REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 GLN B 44 CG CD OE1 NE2 REMARK 470 ASN B 98 CG OD1 ND2 REMARK 470 LEU B 99 CG CD1 CD2 REMARK 470 GLN B 100 CG CD OE1 NE2 REMARK 470 THR B 101 OG1 CG2 REMARK 470 THR B 103 OG1 CG2 REMARK 470 LEU B 104 CG CD1 CD2 REMARK 470 SER B 105 OG REMARK 470 ARG B 108 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 TYR B 110 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 33 76.11 10.51 REMARK 500 GLU C 41 40.98 75.54 REMARK 500 ALA C 43 92.95 -63.64 REMARK 500 SER C 53 83.71 -67.69 REMARK 500 LEU C 101 102.27 -162.37 REMARK 500 PRO C 103 -77.07 -53.93 REMARK 500 GLN C 104 135.37 76.39 REMARK 500 CYS C 109 -139.89 -130.28 REMARK 500 GLN C 121 119.20 -171.59 REMARK 500 ASP D 33 61.10 35.92 REMARK 500 SER D 36 -140.03 -94.31 REMARK 500 TYR D 40 87.03 -43.16 REMARK 500 ASP D 42 112.10 -164.68 REMARK 500 ILE D 54 103.45 -54.69 REMARK 500 VAL D 63 83.03 -152.83 REMARK 500 GLU D 77 -38.80 -36.29 REMARK 500 GLN D 104 -123.03 35.93 REMARK 500 LEU D 105 83.39 62.27 REMARK 500 PRO D 107 -154.67 -61.30 REMARK 500 SER D 108 -9.74 72.83 REMARK 500 PRO D 122 153.84 -46.44 REMARK 500 PRO D 123 23.89 -79.91 REMARK 500 HIS D 124 -100.19 -66.62 REMARK 500 PRO A 4 159.43 -49.06 REMARK 500 GLN A 5 88.42 -160.31 REMARK 500 ALA A 14 91.40 -66.60 REMARK 500 PHE A 29 -169.76 -74.15 REMARK 500 ALA A 30 -71.97 65.42 REMARK 500 TRP A 34 -166.04 -120.86 REMARK 500 ILE A 48 -65.75 -94.41 REMARK 500 ARG A 56 -173.42 -61.56 REMARK 500 ARG A 66 -70.88 -134.36 REMARK 500 SER A 84 83.59 45.44 REMARK 500 THR A 90 105.47 -55.96 REMARK 500 GLN A 100 -31.41 70.94 REMARK 500 LEU A 104 -140.34 -66.54 REMARK 500 SER A 105 95.32 58.22 REMARK 500 ALA A 107 -127.74 66.93 REMARK 500 LEU A 109 151.83 63.51 REMARK 500 LEU B 11 131.00 -172.98 REMARK 500 ILE B 27 142.81 -34.10 REMARK 500 THR B 28 141.27 -30.59 REMARK 500 PHE B 29 -51.44 -121.74 REMARK 500 TRP B 34 -156.13 -101.38 REMARK 500 GLN B 44 -167.51 -78.50 REMARK 500 ILE B 48 -86.01 -120.59 REMARK 500 ASN B 52 -174.75 -65.81 REMARK 500 GLU B 54 -62.02 -125.66 REMARK 500 SER B 62 -81.49 -53.58 REMARK 500 VAL B 63 5.35 -66.62 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K7U RELATED DB: PDB REMARK 900 RELATED ID: 3K80 RELATED DB: PDB DBREF 3K81 C 1 164 UNP Q38B90 Q38B90_9TRYP 1 164 DBREF 3K81 D 1 164 UNP Q38B90 Q38B90_9TRYP 1 164 DBREF 3K81 A 1 127 PDB 3K81 3K81 1 127 DBREF 3K81 B 1 127 PDB 3K81 3K81 1 127 SEQRES 1 C 164 MET LEU ALA LEU THR SER ARG ARG LEU LEU LEU GLN GLN SEQRES 2 C 164 THR PHE MET ARG CYS CYS LYS SER VAL ASN SER VAL THR SEQRES 3 C 164 LEU VAL GLY VAL VAL HIS ASP ILE GLN SER GLY PHE VAL SEQRES 4 C 164 TYR GLU ASP ALA VAL THR GLN PHE THR LEU THR THR THR SEQRES 5 C 164 SER ILE ASP THR THR HIS PRO THR GLN GLU VAL VAL VAL SEQRES 6 C 164 GLU LYS ASP HIS HIS THR ILE ARG CYS PHE GLY GLU LEU SEQRES 7 C 164 PHE SER ALA GLU VAL LYS GLN LYS VAL LYS GLU GLY ASN SEQRES 8 C 164 VAL VAL CYS VAL ASN GLY ARG LEU ARG LEU SER PRO GLN SEQRES 9 C 164 LEU GLU PRO SER CYS ASN LYS HIS PHE TYR PHE PRO TYR SEQRES 10 C 164 ILE GLN VAL GLN PRO PRO HIS GLY GLN VAL ALA VAL ILE SEQRES 11 C 164 HIS GLY ASP ARG ARG THR VAL PRO ALA ALA VAL ASN PRO SEQRES 12 C 164 ALA VAL GLU ASP ILE LYS SER GLU LYS GLU GLY SER GLY SEQRES 13 C 164 GLY ASP GLN SER GLY VAL PRO SER SEQRES 1 D 164 MET LEU ALA LEU THR SER ARG ARG LEU LEU LEU GLN GLN SEQRES 2 D 164 THR PHE MET ARG CYS CYS LYS SER VAL ASN SER VAL THR SEQRES 3 D 164 LEU VAL GLY VAL VAL HIS ASP ILE GLN SER GLY PHE VAL SEQRES 4 D 164 TYR GLU ASP ALA VAL THR GLN PHE THR LEU THR THR THR SEQRES 5 D 164 SER ILE ASP THR THR HIS PRO THR GLN GLU VAL VAL VAL SEQRES 6 D 164 GLU LYS ASP HIS HIS THR ILE ARG CYS PHE GLY GLU LEU SEQRES 7 D 164 PHE SER ALA GLU VAL LYS GLN LYS VAL LYS GLU GLY ASN SEQRES 8 D 164 VAL VAL CYS VAL ASN GLY ARG LEU ARG LEU SER PRO GLN SEQRES 9 D 164 LEU GLU PRO SER CYS ASN LYS HIS PHE TYR PHE PRO TYR SEQRES 10 D 164 ILE GLN VAL GLN PRO PRO HIS GLY GLN VAL ALA VAL ILE SEQRES 11 D 164 HIS GLY ASP ARG ARG THR VAL PRO ALA ALA VAL ASN PRO SEQRES 12 D 164 ALA VAL GLU ASP ILE LYS SER GLU LYS GLU GLY SER GLY SEQRES 13 D 164 GLY ASP GLN SER GLY VAL PRO SER SEQRES 1 A 127 GLU VAL GLN PRO GLN GLU SER GLY GLY GLY LEU ALA GLN SEQRES 2 A 127 ALA GLY GLY SER LEU ARG LEU SER CYS VAL VAL SER GLY SEQRES 3 A 127 ILE THR PHE ALA SER GLU ALA TRP GLY TRP TYR ARG ARG SEQRES 4 A 127 ALA PRO GLY LYS GLN ARG GLU LEU ILE ALA ALA ILE ASN SEQRES 5 A 127 ASN GLU GLY ARG THR ASN TYR VAL ASP SER VAL LYS GLY SEQRES 6 A 127 ARG PHE THR VAL SER ARG ASP ASN ALA LYS ASN VAL MET SEQRES 7 A 127 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 A 127 VAL TYR TYR CYS ASN ALA ASN LEU GLN THR GLY THR LEU SEQRES 9 A 127 SER GLY ALA ARG LEU TYR TRP GLY GLN GLY THR GLN VAL SEQRES 10 A 127 THR VAL SER SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 127 GLU VAL GLN PRO GLN GLU SER GLY GLY GLY LEU ALA GLN SEQRES 2 B 127 ALA GLY GLY SER LEU ARG LEU SER CYS VAL VAL SER GLY SEQRES 3 B 127 ILE THR PHE ALA SER GLU ALA TRP GLY TRP TYR ARG ARG SEQRES 4 B 127 ALA PRO GLY LYS GLN ARG GLU LEU ILE ALA ALA ILE ASN SEQRES 5 B 127 ASN GLU GLY ARG THR ASN TYR VAL ASP SER VAL LYS GLY SEQRES 6 B 127 ARG PHE THR VAL SER ARG ASP ASN ALA LYS ASN VAL MET SEQRES 7 B 127 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 127 VAL TYR TYR CYS ASN ALA ASN LEU GLN THR GLY THR LEU SEQRES 9 B 127 SER GLY ALA ARG LEU TYR TRP GLY GLN GLY THR GLN VAL SEQRES 10 B 127 THR VAL SER SER HIS HIS HIS HIS HIS HIS HELIX 1 1 GLY C 76 VAL C 87 1 12 HELIX 2 2 GLY D 76 VAL D 87 1 12 HELIX 3 3 LEU A 99 THR A 103 5 5 SHEET 1 A 7 VAL C 127 ILE C 130 0 SHEET 2 A 7 VAL C 92 VAL C 95 -1 N CYS C 94 O ALA C 128 SHEET 3 A 7 VAL C 22 HIS C 32 -1 N LEU C 27 O VAL C 95 SHEET 4 A 7 PHE C 47 THR C 51 -1 O THR C 50 N VAL C 30 SHEET 5 A 7 ASP C 68 CYS C 74 -1 O ILE C 72 N PHE C 47 SHEET 6 A 7 PHE C 115 VAL C 120 1 O VAL C 120 N ARG C 73 SHEET 7 A 7 ARG C 98 SER C 102 -1 N SER C 102 O PHE C 115 SHEET 1 B 4 GLN D 126 VAL D 129 0 SHEET 2 B 4 VAL D 92 SER D 102 -1 N CYS D 94 O ALA D 128 SHEET 3 B 4 ASN D 23 HIS D 32 -1 N LEU D 27 O VAL D 95 SHEET 4 B 4 VAL C 22 HIS C 32 -1 N SER C 24 O THR D 26 SHEET 1 C 5 VAL D 92 SER D 102 0 SHEET 2 C 5 PHE D 115 VAL D 120 -1 O PHE D 115 N SER D 102 SHEET 3 C 5 GLU D 66 CYS D 74 1 N THR D 71 O ILE D 118 SHEET 4 C 5 THR D 45 SER D 53 -1 N SER D 53 O GLU D 66 SHEET 5 C 5 ASN D 23 HIS D 32 -1 N HIS D 32 O THR D 48 SHEET 1 D 2 GLY C 37 PHE C 38 0 SHEET 2 D 2 ALA C 43 VAL C 44 -1 O VAL C 44 N GLY C 37 SHEET 1 E 2 PHE D 38 VAL D 39 0 SHEET 2 E 2 ASP D 42 ALA D 43 -1 O ASP D 42 N VAL D 39 SHEET 1 F 4 GLU A 6 SER A 7 0 SHEET 2 F 4 SER A 17 CYS A 22 -1 O SER A 21 N SER A 7 SHEET 3 F 4 VAL A 77 ASN A 83 -1 O MET A 82 N LEU A 18 SHEET 4 F 4 THR A 68 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 G 5 THR A 57 TYR A 59 0 SHEET 2 G 5 ARG A 45 ILE A 51 -1 N ALA A 50 O ASN A 58 SHEET 3 G 5 TRP A 34 ARG A 39 -1 N TRP A 36 O ILE A 48 SHEET 4 G 5 ALA A 91 ASN A 96 -1 O TYR A 94 N TYR A 37 SHEET 5 G 5 THR A 115 VAL A 117 -1 O THR A 115 N TYR A 93 SHEET 1 H 3 SER B 17 LEU B 18 0 SHEET 2 H 3 LEU B 80 ASN B 83 -1 O MET B 82 N LEU B 18 SHEET 3 H 3 THR B 68 VAL B 69 -1 N THR B 68 O GLN B 81 SHEET 1 I 2 CYS B 22 VAL B 23 0 SHEET 2 I 2 VAL B 77 MET B 78 -1 O MET B 78 N CYS B 22 SHEET 1 J 4 ARG B 45 LEU B 47 0 SHEET 2 J 4 TRP B 34 ARG B 39 -1 N ARG B 38 O GLU B 46 SHEET 3 J 4 ALA B 91 ALA B 97 -1 O ASN B 96 N GLY B 35 SHEET 4 J 4 THR B 115 VAL B 117 -1 O THR B 115 N TYR B 93 SSBOND 1 CYS A 22 CYS A 95 1555 1555 2.03 SSBOND 2 CYS B 22 CYS B 95 1555 1555 2.03 CISPEP 1 SER C 108 CYS C 109 0 0.63 CISPEP 2 PRO C 122 PRO C 123 0 -0.54 CISPEP 3 GLU D 62 VAL D 63 0 0.00 CISPEP 4 PRO D 122 PRO D 123 0 -0.51 CISPEP 5 SER A 25 GLY A 26 0 0.09 CISPEP 6 ILE A 27 THR A 28 0 0.97 CISPEP 7 GLU A 54 GLY A 55 0 2.20 CISPEP 8 GLU B 54 GLY B 55 0 0.11 CISPEP 9 GLN B 100 THR B 101 0 -4.19 CRYST1 80.030 68.605 93.335 90.00 102.23 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012495 0.000000 0.002708 0.00000 SCALE2 0.000000 0.014576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010963 0.00000