PDB Short entry for 3K9L HEADER ONCOPROTEIN 15-OCT-09 3K9L TITLE ALLOSTERIC MODULATION OF H-RAS GTPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 1-166; COMPND 5 SYNONYM: TRANSFORMING PROTEIN P21, P21RAS, H-RAS-1, C-H-RAS, HA-RAS, COMPND 6 GTPASE HRAS, N-TERMINALLY PROCESSED; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS SWITCH I MUTANT, CELL MEMBRANE, DISEASE MUTATION, GOLGI APPARATUS, KEYWDS 2 GTP-BINDING, LIPOPROTEIN, MEMBRANE, METHYLATION, NUCLEOTIDE-BINDING, KEYWDS 3 PALMITATE, PRENYLATION, PROTO-ONCOGENE, S-NITROSYLATION, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.FETICS,M.YOUNG,G.BUHRMAN,C.MATTOS REVDAT 3 06-SEP-23 3K9L 1 REMARK REVDAT 2 13-OCT-21 3K9L 1 REMARK SEQADV LINK REVDAT 1 03-NOV-10 3K9L 0 JRNL AUTH S.FETICS,M.YOUNG,G.BUHRMAN,C.MATTOS JRNL TITL ALLOSTERIC MODULATION OF H-RAS GTPASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.4 REMARK 3 NUMBER OF REFLECTIONS : 36127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.3203 - 3.7421 0.92 4230 160 0.2006 0.2268 REMARK 3 2 3.7421 - 2.9710 0.96 4268 162 0.1970 0.2572 REMARK 3 3 2.9710 - 2.5957 0.96 4198 160 0.2205 0.2953 REMARK 3 4 2.5957 - 2.3585 0.97 4250 161 0.2242 0.2737 REMARK 3 5 2.3585 - 2.1895 0.88 3800 142 0.2348 0.2918 REMARK 3 6 2.1895 - 2.0604 0.90 3908 152 0.2375 0.3095 REMARK 3 7 2.0604 - 1.9572 0.86 3685 143 0.2341 0.2639 REMARK 3 8 1.9572 - 1.8721 0.67 2919 112 0.2911 0.3933 REMARK 3 9 1.8721 - 1.8000 0.82 3542 135 0.2123 0.2575 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 53.48 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 1.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3880 REMARK 3 ANGLE : 1.152 5262 REMARK 3 CHIRALITY : 0.071 599 REMARK 3 PLANARITY : 0.004 670 REMARK 3 DIHEDRAL : 18.471 1421 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3K9L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055718. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 31.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.84000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 2RGE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 5 MM MGCL2, 10 REMARK 280 MM DTT, 20% PEG 3350., PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.55650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.48750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.31600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.48750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.55650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.31600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 65 REMARK 465 ALA A 66 REMARK 465 MET A 67 REMARK 465 ARG A 68 REMARK 465 ASP A 69 REMARK 465 GLN A 70 REMARK 465 TYR A 71 REMARK 465 GLY B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 MET B 67 REMARK 465 GLN C 61 REMARK 465 GLU C 62 REMARK 465 GLU C 63 REMARK 465 TYR C 64 REMARK 465 SER C 65 REMARK 465 ALA C 66 REMARK 465 MET C 67 REMARK 465 ARG C 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 61 CG CD OE1 NE2 REMARK 470 GLU A 62 CG CD OE1 OE2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 GLN B 70 CG CD OE1 NE2 REMARK 470 TYR B 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 69 CG OD1 OD2 REMARK 470 GLN C 70 CG CD OE1 NE2 REMARK 470 TYR C 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 37 127.36 178.54 REMARK 500 GLU A 63 9.22 -59.45 REMARK 500 ASP A 105 31.87 75.37 REMARK 500 ALA A 122 48.71 -90.81 REMARK 500 PRO B 34 -126.86 -29.90 REMARK 500 THR B 35 100.66 74.39 REMARK 500 ILE B 36 -96.08 -102.68 REMARK 500 ASP B 38 -167.17 -168.47 REMARK 500 ASP B 108 79.62 -119.95 REMARK 500 ARG B 149 -3.36 76.51 REMARK 500 ASN C 26 42.83 74.85 REMARK 500 ASP C 30 -127.66 49.55 REMARK 500 ILE C 36 115.95 -16.09 REMARK 500 ASP C 38 -136.37 56.87 REMARK 500 LYS C 117 35.82 75.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 167 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 3 O REMARK 620 2 GLU A 76 OE1 77.2 REMARK 620 3 GLU A 76 OE2 108.0 47.8 REMARK 620 4 HOH A 414 O 85.1 79.2 117.2 REMARK 620 5 HOH A 425 O 72.4 86.4 63.3 155.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 168 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 THR A 35 OG1 78.4 REMARK 620 3 GNP A 201 O2B 94.0 171.0 REMARK 620 4 GNP A 201 O2G 172.5 95.4 91.9 REMARK 620 5 HOH A 322 O 83.2 92.9 81.4 93.1 REMARK 620 6 HOH A 323 O 96.5 92.3 93.3 87.8 174.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 167 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 3 OE1 REMARK 620 2 GLU B 3 OE2 47.7 REMARK 620 3 HOH B 328 O 94.8 140.6 REMARK 620 4 HOH B 439 O 85.8 89.5 73.9 REMARK 620 5 HOH B 453 O 109.1 78.1 134.8 143.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 168 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 ILE B 36 O 80.5 REMARK 620 3 HOH B 176 O 87.5 89.5 REMARK 620 4 HOH B 179 O 80.7 98.0 164.7 REMARK 620 5 GNP B 202 O2G 173.7 105.6 90.6 100.1 REMARK 620 6 GNP B 202 O2B 88.4 166.0 81.5 88.5 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 167 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 17 OG REMARK 620 2 GNP C 203 O2G 176.5 REMARK 620 3 GNP C 203 O2B 88.6 94.8 REMARK 620 4 HOH C 277 O 90.3 90.9 84.2 REMARK 620 5 HOH C 278 O 81.1 98.1 89.7 169.5 REMARK 620 6 HOH C 299 O 80.7 96.0 167.8 90.1 94.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 167 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP C 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RGE RELATED DB: PDB REMARK 900 H-RAS GPPNHP CRYSTALLIZED IN 200 MM CALCIUM CHLORIDE REMARK 900 RELATED ID: 3K8Y RELATED DB: PDB REMARK 900 WT H-RAS GTPASE REMARK 900 RELATED ID: 3K9N RELATED DB: PDB REMARK 900 Y32F RAS GPPNHP MUTANT IN A DIFFERENT SPACE GROUP DBREF 3K9L A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 3K9L B 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 3K9L C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 3K9L PHE A 32 UNP P01112 TYR 32 ENGINEERED MUTATION SEQADV 3K9L PHE B 32 UNP P01112 TYR 32 ENGINEERED MUTATION SEQADV 3K9L PHE C 32 UNP P01112 TYR 32 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU PHE ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 B 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 B 166 HIS PHE VAL ASP GLU PHE ASP PRO THR ILE GLU ASP SER SEQRES 4 B 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 B 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 B 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 B 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 B 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 B 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 B 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 B 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 B 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 B 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 C 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY GLY SEQRES 2 C 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 C 166 HIS PHE VAL ASP GLU PHE ASP PRO THR ILE GLU ASP SER SEQRES 4 C 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 C 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 C 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 C 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 C 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 C 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 C 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 C 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 C 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 C 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET CA A 167 1 HET MG A 168 1 HET GNP A 201 32 HET CA B 167 1 HET MG B 168 1 HET GNP B 202 32 HET MG C 167 1 HET GNP C 203 32 HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER FORMUL 4 CA 2(CA 2+) FORMUL 5 MG 3(MG 2+) FORMUL 6 GNP 3(C10 H17 N6 O13 P3) FORMUL 12 HOH *236(H2 O) HELIX 1 1 GLY A 15 ASN A 26 1 12 HELIX 2 2 ASN A 86 ASP A 92 1 7 HELIX 3 3 ASP A 92 ASP A 105 1 14 HELIX 4 4 GLU A 126 GLY A 138 1 13 HELIX 5 5 GLY A 151 HIS A 166 1 16 HELIX 6 6 GLY B 15 ASN B 26 1 12 HELIX 7 7 GLN B 70 GLY B 75 1 6 HELIX 8 8 ASN B 86 ASP B 105 1 20 HELIX 9 9 GLU B 126 GLY B 138 1 13 HELIX 10 10 GLY B 151 HIS B 166 1 16 HELIX 11 11 GLY C 15 ASN C 26 1 12 HELIX 12 12 ASP C 69 GLY C 75 1 7 HELIX 13 13 ASN C 86 ASP C 105 1 20 HELIX 14 14 GLU C 126 TYR C 137 1 12 HELIX 15 15 GLY C 151 HIS C 166 1 16 SHEET 1 A 6 GLU A 37 ILE A 46 0 SHEET 2 A 6 GLU A 49 THR A 58 -1 O ASP A 57 N ASP A 38 SHEET 3 A 6 THR A 2 GLY A 10 1 N LEU A 6 O LEU A 56 SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9 SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 A 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 B 6 ASP B 38 ILE B 46 0 SHEET 2 B 6 GLU B 49 ASP B 57 -1 O LEU B 53 N LYS B 42 SHEET 3 B 6 THR B 2 GLY B 10 1 N LEU B 6 O ASP B 54 SHEET 4 B 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 9 SHEET 5 B 6 MET B 111 ASN B 116 1 O ASN B 116 N PHE B 82 SHEET 6 B 6 TYR B 141 THR B 144 1 O ILE B 142 N LEU B 113 SHEET 1 C 6 TYR C 40 ILE C 46 0 SHEET 2 C 6 GLU C 49 ASP C 57 -1 O ILE C 55 N TYR C 40 SHEET 3 C 6 GLU C 3 VAL C 9 1 N LEU C 6 O ASP C 54 SHEET 4 C 6 GLY C 77 ALA C 83 1 O VAL C 81 N VAL C 9 SHEET 5 C 6 MET C 111 ASN C 116 1 O ASN C 116 N PHE C 82 SHEET 6 C 6 TYR C 141 GLU C 143 1 O ILE C 142 N LEU C 113 LINK O GLU A 3 CA CA A 167 1555 1555 2.54 LINK OG SER A 17 MG MG A 168 1555 1555 2.27 LINK OG1 THR A 35 MG MG A 168 1555 1555 2.41 LINK OE1 GLU A 76 CA CA A 167 1555 1555 2.76 LINK OE2 GLU A 76 CA CA A 167 1555 1555 2.68 LINK CA CA A 167 O HOH A 414 1555 1555 2.66 LINK CA CA A 167 O HOH A 425 1555 1555 2.76 LINK MG MG A 168 O2B GNP A 201 1555 1555 2.13 LINK MG MG A 168 O2G GNP A 201 1555 1555 2.10 LINK MG MG A 168 O HOH A 322 1555 1555 2.33 LINK MG MG A 168 O HOH A 323 1555 1555 2.24 LINK OE1 GLU B 3 CA CA B 167 1555 1555 2.63 LINK OE2 GLU B 3 CA CA B 167 1555 1555 2.80 LINK OG SER B 17 MG MG B 168 1555 1555 2.43 LINK O ILE B 36 MG MG B 168 1555 1555 2.65 LINK CA CA B 167 O HOH B 328 1555 1555 2.59 LINK CA CA B 167 O HOH B 439 1555 1555 2.76 LINK CA CA B 167 O HOH B 453 1555 1555 2.61 LINK MG MG B 168 O HOH B 176 1555 1555 2.44 LINK MG MG B 168 O HOH B 179 1555 1555 2.34 LINK MG MG B 168 O2G GNP B 202 1555 1555 2.16 LINK MG MG B 168 O2B GNP B 202 1555 1555 2.36 LINK OG SER C 17 MG MG C 167 1555 1555 2.29 LINK MG MG C 167 O2G GNP C 203 1555 1555 2.18 LINK MG MG C 167 O2B GNP C 203 1555 1555 2.22 LINK MG MG C 167 O HOH C 277 1555 1555 2.28 LINK MG MG C 167 O HOH C 278 1555 1555 2.21 LINK MG MG C 167 O HOH C 299 1555 1555 2.32 SITE 1 AC1 4 GLU A 3 GLU A 76 HOH A 414 HOH A 425 SITE 1 AC2 5 SER A 17 THR A 35 GNP A 201 HOH A 322 SITE 2 AC2 5 HOH A 323 SITE 1 AC3 27 GLY A 12 GLY A 13 VAL A 14 GLY A 15 SITE 2 AC3 27 LYS A 16 SER A 17 ALA A 18 PHE A 28 SITE 3 AC3 27 VAL A 29 ASP A 30 PHE A 32 PRO A 34 SITE 4 AC3 27 THR A 35 GLY A 60 ASN A 116 LYS A 117 SITE 5 AC3 27 ASP A 119 LEU A 120 SER A 145 ALA A 146 SITE 6 AC3 27 LYS A 147 MG A 168 HOH A 175 HOH A 189 SITE 7 AC3 27 HOH A 272 HOH A 322 HOH A 323 SITE 1 AC4 6 GLU B 3 HOH B 328 HOH B 439 HOH B 453 SITE 2 AC4 6 ASP C 33 HOH C 474 SITE 1 AC5 5 SER B 17 ILE B 36 HOH B 176 HOH B 179 SITE 2 AC5 5 GNP B 202 SITE 1 AC6 24 GLY B 12 GLY B 13 VAL B 14 GLY B 15 SITE 2 AC6 24 LYS B 16 SER B 17 ALA B 18 PHE B 28 SITE 3 AC6 24 VAL B 29 ASP B 30 GLU B 31 ASN B 116 SITE 4 AC6 24 LYS B 117 ASP B 119 LEU B 120 SER B 145 SITE 5 AC6 24 ALA B 146 LYS B 147 MG B 168 HOH B 176 SITE 6 AC6 24 HOH B 206 HOH B 261 HOH B 272 HOH B 466 SITE 1 AC7 5 SER C 17 GNP C 203 HOH C 277 HOH C 278 SITE 2 AC7 5 HOH C 299 SITE 1 AC8 25 HOH B 453 GLY C 12 GLY C 13 VAL C 14 SITE 2 AC8 25 GLY C 15 LYS C 16 SER C 17 ALA C 18 SITE 3 AC8 25 PHE C 28 ASP C 30 GLY C 60 ASN C 116 SITE 4 AC8 25 LYS C 117 ASP C 119 LEU C 120 SER C 145 SITE 5 AC8 25 ALA C 146 LYS C 147 MG C 167 HOH C 272 SITE 6 AC8 25 HOH C 277 HOH C 284 HOH C 300 HOH C 474 SITE 7 AC8 25 HOH C 523 CRYST1 95.113 60.632 74.975 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010514 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016493 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013338 0.00000