PDB Short entry for 3K9V HEADER OXIDOREDUCTASE 16-OCT-09 3K9V TITLE CRYSTAL STRUCTURE OF RAT MITOCHONDRIAL P450 24A1 S57D IN COMPLEX WITH TITLE 2 CHAPS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1,25-DIHYDROXYVITAMIN D(3) 24-HYDROXYLASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 34-514; COMPND 5 SYNONYM: VITAMIN D(3) 24-HYDROXYLASE, 24-OHASE, CYTOCHROME P450 24A1, COMPND 6 P450-CC24; COMPND 7 EC: 1.14.13.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CYP24, CYP24A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: DH5ALPHA-FIQ; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS MITOCHONDRIAL CYTOCHROME P450, MONOTOPIC MEMBRANE PROTEIN, KEYWDS 2 MONOOXYGENASE, VITAMIN D HORMONE METABOLISM, ADRENODOXIN, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.J.ANNALORA,D.B.GOODIN,W.HONG,Q.ZHANG,E.F.JOHNSON,C.D.STOUT REVDAT 5 06-SEP-23 3K9V 1 REMARK REVDAT 4 13-OCT-21 3K9V 1 REMARK SEQADV LINK REVDAT 3 17-JUL-19 3K9V 1 REMARK REVDAT 2 02-MAR-10 3K9V 1 JRNL REVDAT 1 15-DEC-09 3K9V 0 JRNL AUTH A.J.ANNALORA,D.B.GOODIN,W.X.HONG,Q.ZHANG,E.F.JOHNSON, JRNL AUTH 2 C.D.STOUT JRNL TITL CRYSTAL STRUCTURE OF CYP24A1, A MITOCHONDRIAL CYTOCHROME JRNL TITL 2 P450 INVOLVED IN VITAMIN D METABOLISM. JRNL REF J.MOL.BIOL. V. 396 441 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19961857 JRNL DOI 10.1016/J.JMB.2009.11.057 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 43128 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2287 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2617 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 80.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 141 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7594 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 298 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.12000 REMARK 3 B22 (A**2) : 1.07000 REMARK 3 B33 (A**2) : -0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.467 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.281 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.192 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.334 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9024 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 13848 ; 1.136 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1852 ; 5.002 ; 7.500 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 360 ;37.710 ;23.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1460 ;19.209 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;20.802 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1224 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9754 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4652 ; 0.608 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7546 ; 1.182 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3446 ; 1.519 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3472 ; 2.627 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : B A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1856 ; 0.33 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 B (A): 1984 ; 0.77 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 1856 ; 4.15 ; 0.50 REMARK 3 LOOSE THERMAL 1 B (A**2): 1984 ; 4.05 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3K9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-09. REMARK 100 THE DEPOSITION ID IS D_1000055728. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58240 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 91.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : 0.15000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : 0.59800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1TQN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 3350, 0.1M TRIS-HCL, 0.2 M REMARK 280 POTASSIUM THIOCYANATE, PH 8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 280K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 91.30450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.82350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 91.30450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.82350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -59.02659 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 91.27614 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 ALA A 34 REMARK 465 SER A 35 REMARK 465 ARG A 36 REMARK 465 ALA A 37 REMARK 465 PRO A 38 REMARK 465 LYS A 39 REMARK 465 GLU A 40 REMARK 465 VAL A 41 REMARK 465 PRO A 42 REMARK 465 LEU A 43 REMARK 465 CYS A 44 REMARK 465 PRO A 45 REMARK 465 LEU A 46 REMARK 465 MET A 47 REMARK 465 THR A 48 REMARK 465 ASP A 49 REMARK 465 GLY A 50 REMARK 465 MET B 33 REMARK 465 ALA B 34 REMARK 465 SER B 35 REMARK 465 ARG B 36 REMARK 465 ALA B 37 REMARK 465 PRO B 38 REMARK 465 LYS B 39 REMARK 465 GLU B 40 REMARK 465 VAL B 41 REMARK 465 PRO B 42 REMARK 465 LEU B 43 REMARK 465 CYS B 44 REMARK 465 PRO B 45 REMARK 465 LEU B 46 REMARK 465 MET B 47 REMARK 465 THR B 48 REMARK 465 ASP B 49 REMARK 465 GLY B 50 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 430 NH2 ARG B 439 2.15 REMARK 500 NH2 ARG A 344 O ASP A 489 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 66 -52.42 68.98 REMARK 500 ASP A 195 -164.23 -79.51 REMARK 500 GLU A 230 -34.03 82.89 REMARK 500 GLU A 233 30.33 -86.96 REMARK 500 VAL A 254 -62.11 -94.75 REMARK 500 ASP A 362 -149.20 58.32 REMARK 500 ASN A 363 60.83 -111.73 REMARK 500 ASN A 373 35.43 -97.59 REMARK 500 THR A 394 -165.83 -126.06 REMARK 500 ASP A 431 65.78 65.86 REMARK 500 LEU B 66 -44.18 65.28 REMARK 500 GLU B 221 57.55 37.13 REMARK 500 GLU B 230 -55.91 103.53 REMARK 500 VAL B 254 -67.59 -100.49 REMARK 500 GLN B 357 1.60 -65.78 REMARK 500 ASP B 362 -175.06 70.89 REMARK 500 LYS B 445 97.22 -160.37 REMARK 500 LEU B 498 72.66 -116.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 CPS A 601 REMARK 610 CPS A 602 REMARK 610 CPS B 701 REMARK 610 CPS B 702 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 520 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 462 SG REMARK 620 2 HEM A 520 NA 101.2 REMARK 620 3 HEM A 520 NB 90.8 84.1 REMARK 620 4 HEM A 520 NC 91.0 164.1 85.8 REMARK 620 5 HEM A 520 ND 100.8 95.7 168.2 91.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 520 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 462 SG REMARK 620 2 HEM B 520 NA 102.2 REMARK 620 3 HEM B 520 NB 92.2 85.0 REMARK 620 4 HEM B 520 NC 90.9 163.1 83.9 REMARK 620 5 HEM B 520 ND 98.9 95.2 168.6 93.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 520 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPS B 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3K9Y RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT MITOCHONDRIAL P450 24A1 S57D IN COMPLEX REMARK 900 WITH CYMAL-5 DBREF 3K9V A 34 514 UNP Q09128 CP24A_RAT 34 514 DBREF 3K9V B 34 514 UNP Q09128 CP24A_RAT 34 514 SEQADV 3K9V MET A 33 UNP Q09128 EXPRESSION TAG SEQADV 3K9V ASP A 57 UNP Q09128 SER 57 ENGINEERED MUTATION SEQADV 3K9V MET B 33 UNP Q09128 EXPRESSION TAG SEQADV 3K9V ASP B 57 UNP Q09128 SER 57 ENGINEERED MUTATION SEQRES 1 A 482 MET ALA SER ARG ALA PRO LYS GLU VAL PRO LEU CYS PRO SEQRES 2 A 482 LEU MET THR ASP GLY GLU THR ARG ASN VAL THR ASP LEU SEQRES 3 A 482 PRO GLY PRO THR ASN TRP PRO LEU LEU GLY SER LEU LEU SEQRES 4 A 482 GLU ILE PHE TRP LYS GLY GLY LEU LYS LYS GLN HIS ASP SEQRES 5 A 482 THR LEU ALA GLU TYR HIS LYS LYS TYR GLY GLN ILE PHE SEQRES 6 A 482 ARG MET LYS LEU GLY SER PHE ASP SER VAL HIS LEU GLY SEQRES 7 A 482 SER PRO SER LEU LEU GLU ALA LEU TYR ARG THR GLU SER SEQRES 8 A 482 ALA HIS PRO GLN ARG LEU GLU ILE LYS PRO TRP LYS ALA SEQRES 9 A 482 TYR ARG ASP HIS ARG ASN GLU ALA TYR GLY LEU MET ILE SEQRES 10 A 482 LEU GLU GLY GLN GLU TRP GLN ARG VAL ARG SER ALA PHE SEQRES 11 A 482 GLN LYS LYS LEU MET LYS PRO VAL GLU ILE MET LYS LEU SEQRES 12 A 482 ASP LYS LYS ILE ASN GLU VAL LEU ALA ASP PHE LEU GLU SEQRES 13 A 482 ARG MET ASP GLU LEU CYS ASP GLU ARG GLY ARG ILE PRO SEQRES 14 A 482 ASP LEU TYR SER GLU LEU ASN LYS TRP SER PHE GLU SER SEQRES 15 A 482 ILE CYS LEU VAL LEU TYR GLU LYS ARG PHE GLY LEU LEU SEQRES 16 A 482 GLN LYS GLU THR GLU GLU GLU ALA LEU THR PHE ILE THR SEQRES 17 A 482 ALA ILE LYS THR MET MET SER THR PHE GLY LYS MET MET SEQRES 18 A 482 VAL THR PRO VAL GLU LEU HIS LYS ARG LEU ASN THR LYS SEQRES 19 A 482 VAL TRP GLN ALA HIS THR LEU ALA TRP ASP THR ILE PHE SEQRES 20 A 482 LYS SER VAL LYS PRO CYS ILE ASP ASN ARG LEU GLN ARG SEQRES 21 A 482 TYR SER GLN GLN PRO GLY ALA ASP PHE LEU CYS ASP ILE SEQRES 22 A 482 TYR GLN GLN ASP HIS LEU SER LYS LYS GLU LEU TYR ALA SEQRES 23 A 482 ALA VAL THR GLU LEU GLN LEU ALA ALA VAL GLU THR THR SEQRES 24 A 482 ALA ASN SER LEU MET TRP ILE LEU TYR ASN LEU SER ARG SEQRES 25 A 482 ASN PRO GLN ALA GLN ARG ARG LEU LEU GLN GLU VAL GLN SEQRES 26 A 482 SER VAL LEU PRO ASP ASN GLN THR PRO ARG ALA GLU ASP SEQRES 27 A 482 LEU ARG ASN MET PRO TYR LEU LYS ALA CYS LEU LYS GLU SEQRES 28 A 482 SER MET ARG LEU THR PRO SER VAL PRO PHE THR THR ARG SEQRES 29 A 482 THR LEU ASP LYS PRO THR VAL LEU GLY GLU TYR ALA LEU SEQRES 30 A 482 PRO LYS GLY THR VAL LEU THR LEU ASN THR GLN VAL LEU SEQRES 31 A 482 GLY SER SER GLU ASP ASN PHE GLU ASP SER HIS LYS PHE SEQRES 32 A 482 ARG PRO GLU ARG TRP LEU GLN LYS GLU LYS LYS ILE ASN SEQRES 33 A 482 PRO PHE ALA HIS LEU PRO PHE GLY ILE GLY LYS ARG MET SEQRES 34 A 482 CYS ILE GLY ARG ARG LEU ALA GLU LEU GLN LEU HIS LEU SEQRES 35 A 482 ALA LEU CYS TRP ILE ILE GLN LYS TYR ASP ILE VAL ALA SEQRES 36 A 482 THR ASP ASN GLU PRO VAL GLU MET LEU HIS LEU GLY ILE SEQRES 37 A 482 LEU VAL PRO SER ARG GLU LEU PRO ILE ALA PHE ARG PRO SEQRES 38 A 482 ARG SEQRES 1 B 482 MET ALA SER ARG ALA PRO LYS GLU VAL PRO LEU CYS PRO SEQRES 2 B 482 LEU MET THR ASP GLY GLU THR ARG ASN VAL THR ASP LEU SEQRES 3 B 482 PRO GLY PRO THR ASN TRP PRO LEU LEU GLY SER LEU LEU SEQRES 4 B 482 GLU ILE PHE TRP LYS GLY GLY LEU LYS LYS GLN HIS ASP SEQRES 5 B 482 THR LEU ALA GLU TYR HIS LYS LYS TYR GLY GLN ILE PHE SEQRES 6 B 482 ARG MET LYS LEU GLY SER PHE ASP SER VAL HIS LEU GLY SEQRES 7 B 482 SER PRO SER LEU LEU GLU ALA LEU TYR ARG THR GLU SER SEQRES 8 B 482 ALA HIS PRO GLN ARG LEU GLU ILE LYS PRO TRP LYS ALA SEQRES 9 B 482 TYR ARG ASP HIS ARG ASN GLU ALA TYR GLY LEU MET ILE SEQRES 10 B 482 LEU GLU GLY GLN GLU TRP GLN ARG VAL ARG SER ALA PHE SEQRES 11 B 482 GLN LYS LYS LEU MET LYS PRO VAL GLU ILE MET LYS LEU SEQRES 12 B 482 ASP LYS LYS ILE ASN GLU VAL LEU ALA ASP PHE LEU GLU SEQRES 13 B 482 ARG MET ASP GLU LEU CYS ASP GLU ARG GLY ARG ILE PRO SEQRES 14 B 482 ASP LEU TYR SER GLU LEU ASN LYS TRP SER PHE GLU SER SEQRES 15 B 482 ILE CYS LEU VAL LEU TYR GLU LYS ARG PHE GLY LEU LEU SEQRES 16 B 482 GLN LYS GLU THR GLU GLU GLU ALA LEU THR PHE ILE THR SEQRES 17 B 482 ALA ILE LYS THR MET MET SER THR PHE GLY LYS MET MET SEQRES 18 B 482 VAL THR PRO VAL GLU LEU HIS LYS ARG LEU ASN THR LYS SEQRES 19 B 482 VAL TRP GLN ALA HIS THR LEU ALA TRP ASP THR ILE PHE SEQRES 20 B 482 LYS SER VAL LYS PRO CYS ILE ASP ASN ARG LEU GLN ARG SEQRES 21 B 482 TYR SER GLN GLN PRO GLY ALA ASP PHE LEU CYS ASP ILE SEQRES 22 B 482 TYR GLN GLN ASP HIS LEU SER LYS LYS GLU LEU TYR ALA SEQRES 23 B 482 ALA VAL THR GLU LEU GLN LEU ALA ALA VAL GLU THR THR SEQRES 24 B 482 ALA ASN SER LEU MET TRP ILE LEU TYR ASN LEU SER ARG SEQRES 25 B 482 ASN PRO GLN ALA GLN ARG ARG LEU LEU GLN GLU VAL GLN SEQRES 26 B 482 SER VAL LEU PRO ASP ASN GLN THR PRO ARG ALA GLU ASP SEQRES 27 B 482 LEU ARG ASN MET PRO TYR LEU LYS ALA CYS LEU LYS GLU SEQRES 28 B 482 SER MET ARG LEU THR PRO SER VAL PRO PHE THR THR ARG SEQRES 29 B 482 THR LEU ASP LYS PRO THR VAL LEU GLY GLU TYR ALA LEU SEQRES 30 B 482 PRO LYS GLY THR VAL LEU THR LEU ASN THR GLN VAL LEU SEQRES 31 B 482 GLY SER SER GLU ASP ASN PHE GLU ASP SER HIS LYS PHE SEQRES 32 B 482 ARG PRO GLU ARG TRP LEU GLN LYS GLU LYS LYS ILE ASN SEQRES 33 B 482 PRO PHE ALA HIS LEU PRO PHE GLY ILE GLY LYS ARG MET SEQRES 34 B 482 CYS ILE GLY ARG ARG LEU ALA GLU LEU GLN LEU HIS LEU SEQRES 35 B 482 ALA LEU CYS TRP ILE ILE GLN LYS TYR ASP ILE VAL ALA SEQRES 36 B 482 THR ASP ASN GLU PRO VAL GLU MET LEU HIS LEU GLY ILE SEQRES 37 B 482 LEU VAL PRO SER ARG GLU LEU PRO ILE ALA PHE ARG PRO SEQRES 38 B 482 ARG HET HEM A 520 43 HET CPS A 600 42 HET CPS A 601 32 HET CPS A 602 32 HET HEM B 520 43 HET CPS B 700 42 HET CPS B 701 32 HET CPS B 702 32 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CPS 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- HETNAM 2 CPS PROPANESULFONATE HETSYN HEM HEME HETSYN CPS CHAPS FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CPS 6(C32 H58 N2 O7 S) FORMUL 11 HOH *265(H2 O) HELIX 1 1 THR A 56 LEU A 58 5 3 HELIX 2 2 SER A 69 LYS A 76 1 8 HELIX 3 3 GLY A 78 LYS A 80 5 3 HELIX 4 4 LYS A 81 GLY A 94 1 14 HELIX 5 5 SER A 111 THR A 121 1 11 HELIX 6 6 ILE A 131 ASN A 142 1 12 HELIX 7 7 GLU A 151 MET A 167 1 17 HELIX 8 8 LYS A 168 MET A 173 1 6 HELIX 9 9 LEU A 175 CYS A 194 1 20 HELIX 10 10 ASP A 202 GLU A 221 1 20 HELIX 11 11 ALA A 235 SER A 247 1 13 HELIX 12 12 THR A 248 MET A 253 5 6 HELIX 13 13 PRO A 256 ASN A 264 1 9 HELIX 14 14 THR A 265 TYR A 293 1 29 HELIX 15 15 ASP A 300 ASP A 309 1 10 HELIX 16 16 SER A 312 ARG A 344 1 33 HELIX 17 17 ASN A 345 LEU A 360 1 16 HELIX 18 18 ARG A 367 ASN A 373 5 7 HELIX 19 19 MET A 374 THR A 388 1 15 HELIX 20 20 GLN A 420 SER A 425 5 6 HELIX 21 21 ARG A 436 LEU A 441 5 6 HELIX 22 22 ASN A 448 HIS A 452 5 5 HELIX 23 23 GLY A 464 LYS A 482 1 19 HELIX 24 24 ASN B 54 LEU B 58 5 5 HELIX 25 25 SER B 69 GLY B 77 1 9 HELIX 26 26 GLY B 78 LYS B 80 5 3 HELIX 27 27 LYS B 81 GLY B 94 1 14 HELIX 28 28 SER B 111 THR B 121 1 11 HELIX 29 29 ILE B 131 ARG B 141 1 11 HELIX 30 30 GLU B 151 MET B 167 1 17 HELIX 31 31 LYS B 168 LYS B 174 1 7 HELIX 32 32 LEU B 175 CYS B 194 1 20 HELIX 33 33 ASP B 202 GLU B 221 1 20 HELIX 34 34 THR B 231 GLU B 234 5 4 HELIX 35 35 ALA B 235 GLY B 250 1 16 HELIX 36 36 LYS B 251 MET B 253 5 3 HELIX 37 37 PRO B 256 LEU B 263 1 8 HELIX 38 38 THR B 265 TYR B 293 1 29 HELIX 39 39 GLN B 296 ALA B 299 5 4 HELIX 40 40 ASP B 300 HIS B 310 1 11 HELIX 41 41 SER B 312 ARG B 344 1 33 HELIX 42 42 ASN B 345 LEU B 360 1 16 HELIX 43 43 ARG B 367 ASN B 373 5 7 HELIX 44 44 MET B 374 THR B 388 1 15 HELIX 45 45 GLN B 420 SER B 424 5 5 HELIX 46 46 ARG B 436 LEU B 441 5 6 HELIX 47 47 ASN B 448 HIS B 452 5 5 HELIX 48 48 GLY B 464 LYS B 482 1 19 SHEET 1 A 3 ARG A 53 ASN A 54 0 SHEET 2 A 3 TYR A 407 LEU A 409 1 O ALA A 408 N ARG A 53 SHEET 3 A 3 THR A 402 LEU A 404 -1 N THR A 402 O LEU A 409 SHEET 1 B 4 ILE A 96 LEU A 101 0 SHEET 2 B 4 PHE A 104 LEU A 109 -1 O PHE A 104 N LEU A 101 SHEET 3 B 4 VAL A 414 ASN A 418 1 O THR A 416 N LEU A 109 SHEET 4 B 4 PHE A 393 THR A 397 -1 N ARG A 396 O LEU A 415 SHEET 1 C 2 TYR A 483 ALA A 487 0 SHEET 2 C 2 ILE A 509 PRO A 513 -1 O ALA A 510 N VAL A 486 SHEET 1 D 2 MET A 495 HIS A 497 0 SHEET 2 D 2 LEU A 501 PRO A 503 -1 O VAL A 502 N LEU A 496 SHEET 1 E 4 ILE B 96 LEU B 101 0 SHEET 2 E 4 PHE B 104 LEU B 109 -1 O HIS B 108 N PHE B 97 SHEET 3 E 4 VAL B 414 ASN B 418 1 O THR B 416 N LEU B 109 SHEET 4 E 4 PHE B 393 THR B 397 -1 N ARG B 396 O LEU B 415 SHEET 1 F 2 THR B 402 LEU B 404 0 SHEET 2 F 2 TYR B 407 LEU B 409 -1 O LEU B 409 N THR B 402 SHEET 1 G 2 TYR B 483 ALA B 487 0 SHEET 2 G 2 ILE B 509 PRO B 513 -1 O ARG B 512 N ASP B 484 SHEET 1 H 2 MET B 495 HIS B 497 0 SHEET 2 H 2 LEU B 501 PRO B 503 -1 O VAL B 502 N LEU B 496 LINK SG CYS A 462 FE HEM A 520 1555 1555 2.36 LINK SG CYS B 462 FE HEM B 520 1555 1555 2.16 SITE 1 AC1 21 HOH A 4 ARG A 128 LEU A 147 TRP A 155 SITE 2 AC1 21 ARG A 159 LEU A 323 ALA A 326 ALA A 327 SITE 3 AC1 21 THR A 330 SER A 334 THR A 394 ARG A 396 SITE 4 AC1 21 PRO A 454 PHE A 455 GLY A 456 ILE A 457 SITE 5 AC1 21 ARG A 460 MET A 461 CYS A 462 GLY A 464 SITE 6 AC1 21 CPS A 600 SITE 1 AC2 10 SER A 205 ASN A 208 LYS A 243 GLU A 329 SITE 2 AC2 10 THR A 394 GLY A 499 HEM A 520 HOH A 584 SITE 3 AC2 10 HOH A 597 HOH A 618 SITE 1 AC3 6 GLN A 82 PHE A 104 LEU A 129 LYS A 132 SITE 2 AC3 6 MET A 253 LEU B 66 SITE 1 AC4 2 TRP B 64 GLU B 72 SITE 1 AC5 20 ARG B 128 LEU B 147 TRP B 155 ARG B 159 SITE 2 AC5 20 LEU B 323 ALA B 326 ALA B 327 THR B 330 SITE 3 AC5 20 SER B 334 THR B 394 ARG B 396 PRO B 454 SITE 4 AC5 20 PHE B 455 GLY B 456 ILE B 457 ARG B 460 SITE 5 AC5 20 MET B 461 CYS B 462 GLY B 464 CPS B 700 SITE 1 AC6 9 TYR B 204 MET B 246 GLU B 329 PHE B 393 SITE 2 AC6 9 THR B 394 GLY B 499 HEM B 520 HOH B 599 SITE 3 AC6 9 HOH B 619 SITE 1 AC7 6 LEU A 66 PHE B 74 LEU B 79 PHE B 104 SITE 2 AC7 6 MET B 253 VAL B 254 SITE 1 AC8 3 TRP A 64 TRP A 75 ARG B 262 CRYST1 182.609 81.647 108.699 90.00 122.89 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005476 0.000000 0.003541 0.00000 SCALE2 0.000000 0.012248 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010956 0.00000