PDB Short entry for 3KHG HEADER TRANSFERASE/DNA 30-OCT-09 3KHG TITLE DPO4 EXTENSION TERNARY COMPLEX WITH MISINSERTED A OPPOSITE THE 2- TITLE 2 AMINOFLUORENE-GUANINE [AF]G LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(2DA))-3'; COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*C*CP*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP* COMPND 14 CP*C)-3'; COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA [AF]G-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2 / DSM 1617 / JCM 11322; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL(STRATAGENE); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: DNA [AF]G-MODIFIED TEMPLATE STRAND KEYWDS LESION BYPASS, DNA POLYMERASE, Y-FAMILY POLYMERASE, 2-AMINOFLUORENE, KEYWDS 2 SEMI-TARGETED MUTAGENESIS, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, KEYWDS 3 DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, METAL-BINDING, KEYWDS 4 MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE- KEYWDS 5 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,L.MALININA,D.J.PATEL REVDAT 5 06-SEP-23 3KHG 1 REMARK REVDAT 4 13-OCT-21 3KHG 1 REMARK DBREF SEQADV LINK REVDAT 3 13-JUL-11 3KHG 1 VERSN REVDAT 2 16-MAR-10 3KHG 1 JRNL REVDAT 1 16-FEB-10 3KHG 0 JRNL AUTH O.RECHKOBLIT,A.KOLBANOVSKIY,L.MALININA,N.E.GEACINTOV, JRNL AUTH 2 S.BROYDE,D.J.PATEL JRNL TITL MECHANISM OF ERROR-FREE AND SEMITARGETED MUTAGENIC BYPASS OF JRNL TITL 2 AN AROMATIC AMINE LESION BY Y-FAMILY POLYMERASE DPO4. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 379 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20154704 JRNL DOI 10.1038/NSMB.1771 REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 21625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1224 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1508 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.02 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.4980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 999 REMARK 3 HETEROGEN ATOMS : 111 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.03000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 4.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.85000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.477 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.367 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.996 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6809 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4518 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9352 ; 1.604 ; 2.195 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11052 ; 0.925 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 7.372 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;32.916 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1120 ;17.866 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.157 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1062 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6582 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1226 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3419 ; 0.674 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1380 ; 0.054 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5522 ; 0.830 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3390 ; 1.237 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3830 ; 2.187 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 12.9330 1.7626 2.5266 REMARK 3 T TENSOR REMARK 3 T11: 0.1891 T22: 0.2373 REMARK 3 T33: 0.2757 T12: -0.0118 REMARK 3 T13: 0.0201 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 2.3652 L22: 1.9525 REMARK 3 L33: 1.5759 L12: -0.5991 REMARK 3 L13: -0.0223 L23: 0.4657 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.2201 S13: -0.0180 REMARK 3 S21: 0.1559 S22: 0.0925 S23: 0.1719 REMARK 3 S31: -0.1580 S32: 0.0862 S33: -0.0823 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): -7.0500 57.8642 39.2497 REMARK 3 T TENSOR REMARK 3 T11: 0.2731 T22: 0.2565 REMARK 3 T33: 0.0353 T12: -0.0964 REMARK 3 T13: 0.0029 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.5845 L22: 1.2447 REMARK 3 L33: 3.9640 L12: 0.0732 REMARK 3 L13: -1.2794 L23: -0.6922 REMARK 3 S TENSOR REMARK 3 S11: 0.0445 S12: -0.4699 S13: -0.2522 REMARK 3 S21: 0.4050 S22: -0.0164 S23: 0.0247 REMARK 3 S31: -0.2712 S32: 0.0205 S33: -0.0282 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 802 D 813 REMARK 3 RESIDUE RANGE : E 901 E 919 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 RESIDUE RANGE : E 926 E 926 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0488 -6.3076 12.4162 REMARK 3 T TENSOR REMARK 3 T11: 0.3807 T22: 0.5656 REMARK 3 T33: 0.2698 T12: 0.0906 REMARK 3 T13: -0.1556 T23: 0.0844 REMARK 3 L TENSOR REMARK 3 L11: 1.7909 L22: 3.0326 REMARK 3 L33: 2.9235 L12: 0.0303 REMARK 3 L13: -0.9946 L23: 0.9099 REMARK 3 S TENSOR REMARK 3 S11: -0.1106 S12: -0.4955 S13: -0.2273 REMARK 3 S21: 0.6588 S22: 0.2221 S23: 0.0675 REMARK 3 S31: 0.1716 S32: 0.7197 S33: -0.1115 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1805 H 1813 REMARK 3 RESIDUE RANGE : J 1905 J 1913 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 RESIDUE RANGE : J 1926 J 1926 REMARK 3 ORIGIN FOR THE GROUP (A): -2.6843 48.1243 42.2507 REMARK 3 T TENSOR REMARK 3 T11: 0.5376 T22: 0.8831 REMARK 3 T33: 0.2528 T12: -0.0363 REMARK 3 T13: -0.2096 T23: 0.2850 REMARK 3 L TENSOR REMARK 3 L11: 9.4056 L22: 3.2642 REMARK 3 L33: 10.5990 L12: -2.8285 REMARK 3 L13: -9.5719 L23: 4.3170 REMARK 3 S TENSOR REMARK 3 S11: -0.2798 S12: -0.4421 S13: -1.0311 REMARK 3 S21: 1.1413 S22: -0.2342 S23: -0.1402 REMARK 3 S31: 0.6869 S32: 0.4133 S33: 0.5140 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03320 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23080 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.960 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2ASD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 100 MM CALCIUM REMARK 280 ACETATE, 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.47400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.8 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DG H 1802 REMARK 465 DT H 1803 REMARK 465 DT H 1804 REMARK 465 DG H 1805 REMARK 465 2DA H 1814 REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 465 DA J 1903 REMARK 465 DA J 1904 REMARK 465 DC J 1915 REMARK 465 DA J 1916 REMARK 465 DA J 1917 REMARK 465 DC J 1918 REMARK 465 DC J 1919 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG E 906 O3' DG E 906 C3' -0.049 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 160 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 PRO A 160 C - N - CD ANGL. DEV. = -22.7 DEGREES REMARK 500 DT D 803 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT D 804 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG D 805 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG D 809 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DG D 809 C3' - O3' - P ANGL. DEV. = 11.1 DEGREES REMARK 500 DT D 811 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 DC E 901 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DC E 901 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC E 901 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DC E 901 N1 - C2 - O2 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT E 902 O5' - P - OP2 ANGL. DEV. = -6.5 DEGREES REMARK 500 DC E 905 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG E 906 O4' - C1' - N9 ANGL. DEV. = 6.1 DEGREES REMARK 500 DC E 910 O5' - C5' - C4' ANGL. DEV. = -5.0 DEGREES REMARK 500 DC E 910 O4' - C1' - N1 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA E 912 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC E 914 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC E 915 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA E 916 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DA E 917 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 DC E 918 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC E 919 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DG H1810 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA H1812 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC J1905 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG J1906 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DG J1906 N3 - C4 - C5 ANGL. DEV. = -3.0 DEGREES REMARK 500 DC J1907 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT J1908 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 DA J1909 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DC J1910 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DC J1911 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA J1912 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT J1913 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 58.35 27.22 REMARK 500 ASN A 20 76.88 -162.21 REMARK 500 GLU A 38 108.92 -30.22 REMARK 500 ALA A 71 170.80 -57.29 REMARK 500 LYS A 98 94.44 -66.63 REMARK 500 ASP A 113 36.17 -90.81 REMARK 500 LYS A 114 -36.83 -138.56 REMARK 500 LYS A 137 7.29 57.66 REMARK 500 LYS A 159 -179.11 -65.88 REMARK 500 PRO A 160 123.37 9.66 REMARK 500 PRO A 184 134.54 -33.70 REMARK 500 ASN A 234 43.21 -159.16 REMARK 500 ARG A 247 117.18 -166.24 REMARK 500 ASP A 277 80.74 54.71 REMARK 500 LYS A 278 -15.77 86.35 REMARK 500 GLU A 291 -37.86 -39.00 REMARK 500 TYR A 312 -76.73 -56.86 REMARK 500 TYR B1010 -84.52 31.20 REMARK 500 PHE B1011 -80.02 117.72 REMARK 500 SER B1034 -89.11 -68.71 REMARK 500 PHE B1037 154.47 99.72 REMARK 500 GLU B1038 134.72 -36.67 REMARK 500 ARG B1116 37.34 -146.66 REMARK 500 ASP B1117 144.98 174.87 REMARK 500 TYR B1122 -34.00 -29.42 REMARK 500 GLU B1136 -3.30 -141.34 REMARK 500 LYS B1159 -121.20 48.39 REMARK 500 PRO B1160 -71.27 -85.14 REMARK 500 ILE B1163 109.78 -161.79 REMARK 500 ILE B1166 78.46 -117.33 REMARK 500 ASP B1168 -0.52 -59.65 REMARK 500 ASP B1231 70.34 4.71 REMARK 500 ARG B1247 143.93 -170.78 REMARK 500 ASP B1277 102.65 5.28 REMARK 500 LYS B1278 -40.18 116.50 REMARK 500 GLU B1291 -52.74 -28.16 REMARK 500 ASP B1292 -101.88 -88.33 REMARK 500 LEU B1293 79.63 -166.41 REMARK 500 ASP B1326 134.30 -172.88 REMARK 500 LYS B1339 102.84 60.23 REMARK 500 PHE B1340 -146.39 -102.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 159 PRO A 160 -98.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD2 REMARK 620 2 ASP A 105 OD1 133.7 REMARK 620 3 GLU A 106 OE2 121.8 77.0 REMARK 620 4 DGT A 414 O2A 100.2 86.9 134.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 79.6 REMARK 620 3 ASP A 105 OD2 106.9 87.1 REMARK 620 4 DGT A 414 O1G 95.6 111.9 153.1 REMARK 620 5 DGT A 414 O1B 155.8 85.7 91.4 72.1 REMARK 620 6 DGT A 414 O2A 121.5 156.8 78.0 77.7 77.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 102.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD2 REMARK 620 2 ASP B1105 OD1 110.0 REMARK 620 3 ASP B1105 OD2 87.2 46.7 REMARK 620 4 GLU B1106 OE2 64.5 122.0 144.8 REMARK 620 5 DGT B1414 O2A 86.9 109.0 67.5 127.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD1 REMARK 620 2 PHE B1008 O 92.4 REMARK 620 3 ASP B1105 OD2 114.6 91.3 REMARK 620 4 DGT B1414 O1B 154.2 110.4 77.7 REMARK 620 5 DGT B1414 O2A 96.6 168.1 77.8 62.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B1181 O REMARK 620 2 ILE B1186 O 86.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EPE A 342 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF E 926 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF J 1926 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KHH RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH A C BASE OPPOSITE THE 2- REMARK 900 AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 900 RELATED ID: 3KHL RELATED DB: PDB REMARK 900 DPO4 POST-EXTENSION TERNARY COMPLEX WITH MISINSERTED A OPPOSITE THE REMARK 900 2-AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 900 RELATED ID: 3KHR RELATED DB: PDB REMARK 900 DPO4 POST-EXTENSION TERNARY COMPLEX WITH THE CORRECT C OPPOSITE THE REMARK 900 2-AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 999 REMARK 999 SEQUENCE REMARK 999 IN CHAINS E AND J, THE 19-MER SEQUENCE OF THE DNA OLIGO IS REMARK 999 5'-C T A A C [AF]G C T A C C A T C C A A C C-3', REMARK 999 WHERE [AF]G DENOTES A COVALENT MODIFICATION BY AF REMARK 999 ON THE G BASE 906 IN CHAIN E AND THE G BASE 1906 IN CHAIN J: REMARK 999 D(*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP* REMARK 999 CP)-3' DBREF 3KHG A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3KHG B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3KHG D 802 814 PDB 3KHG 3KHG 802 814 DBREF 3KHG E 901 919 PDB 3KHG 3KHG 901 919 DBREF 3KHG H 1802 1814 PDB 3KHG 3KHG 1802 1814 DBREF 3KHG J 1901 1919 PDB 3KHG 3KHG 1901 1919 SEQADV 3KHG GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3KHG GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQADV 3KHG 2DA D 814 PDB 3KHG A 13 ENGINEERED MUTATION SEQADV 3KHG DG E 906 PDB 3KHG C 6 ENGINEERED MUTATION SEQADV 3KHG 2DA H 1814 PDB 3KHG A 13 ENGINEERED MUTATION SEQADV 3KHG DG J 1906 PDB 3KHG C 6 ENGINEERED MUTATION SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 D 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DA SEQRES 1 E 19 DC DT DA DA DC DG DC DT DA DC DC DA DT SEQRES 2 E 19 DC DC DA DA DC DC SEQRES 1 H 13 DG DT DT DG DG DA DT DG DG DT DA DG 2DA SEQRES 1 J 19 DC DT DA DA DC DG DC DT DA DC DC DA DT SEQRES 2 J 19 DC DC DA DA DC DC MODRES 3KHG 2DA D 814 DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE HET 2DA D 814 3 HET DGT A 414 31 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET EPE A 342 15 HET DGT B1414 31 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HET AF E 926 14 HET AF J1926 14 HETNAM 2DA 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM AF 2-AMINOFLUORENE HETSYN EPE HEPES FORMUL 3 2DA C10 H14 N5 O5 P FORMUL 7 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 CA 6(CA 2+) FORMUL 11 EPE C8 H18 N2 O4 S FORMUL 16 AF 2(C13 H11 N) FORMUL 18 HOH *50(H2 O) HELIX 1 1 TYR A 10 LEU A 19 1 10 HELIX 2 2 ASN A 47 LYS A 52 1 6 HELIX 3 3 PRO A 60 LEU A 68 1 9 HELIX 4 4 ARG A 77 GLU A 94 1 18 HELIX 5 5 ASP A 117 LYS A 137 1 21 HELIX 6 6 ASN A 147 LYS A 159 1 13 HELIX 7 7 ASP A 167 LEU A 178 1 12 HELIX 8 8 ASP A 179 VAL A 183 5 5 HELIX 9 9 GLY A 187 GLY A 198 1 12 HELIX 10 10 VAL A 203 ILE A 208 1 6 HELIX 11 11 GLU A 209 GLY A 218 1 10 HELIX 12 12 GLY A 218 ARG A 230 1 13 HELIX 13 13 ASN A 257 ASP A 277 1 21 HELIX 14 14 SER A 307 ASP A 326 1 20 HELIX 15 15 PHE B 1011 ASN B 1020 1 10 HELIX 16 16 PRO B 1021 LYS B 1024 5 4 HELIX 17 17 ASN B 1047 LYS B 1052 1 6 HELIX 18 18 PRO B 1060 LEU B 1068 1 9 HELIX 19 19 ARG B 1077 GLU B 1094 1 18 HELIX 20 20 ALA B 1121 LYS B 1137 1 17 HELIX 21 21 ASN B 1147 ALA B 1158 1 12 HELIX 22 22 ASP B 1167 GLU B 1177 1 11 HELIX 23 23 ASP B 1179 VAL B 1183 5 5 HELIX 24 24 GLY B 1187 LYS B 1196 1 10 HELIX 25 25 VAL B 1203 ILE B 1208 5 6 HELIX 26 26 GLU B 1209 GLY B 1218 1 10 HELIX 27 27 GLY B 1218 ARG B 1230 1 13 HELIX 28 28 ASN B 1257 ASP B 1277 1 21 HELIX 29 29 SER B 1307 GLU B 1324 1 18 SHEET 1 A 5 ILE A 99 ILE A 101 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O SER A 145 N VAL A 3 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 30 O THR A 45 SHEET 3 B 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O ILE A 333 N VAL A 249 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 332 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B1099 SER B1103 0 SHEET 2 D 5 GLU B1106 ASP B1110 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 VAL B1003 PHE B1008 -1 N LEU B1004 O LEU B1109 SHEET 4 D 5 VAL B1140 SER B1145 -1 O GLY B1143 N PHE B1005 SHEET 5 D 5 GLY B1162 VAL B1165 1 O LYS B1164 N ILE B1144 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1030 O ALA B1044 SHEET 3 E 3 VAL B1072 PRO B1075 1 O LEU B1074 N CYS B1031 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 SER B1338 -1 O PHE B1337 N ILE B1245 SHEET 3 F 4 ALA B1283 THR B1290 -1 N VAL B1289 O ARG B1331 SHEET 4 F 4 ARG B1298 THR B1301 -1 O ARG B1298 N VAL B1286 LINK O3' DG D 813 P 2DA D 814 1555 1555 1.62 LINK C8 DG E 906 N AF E 926 1555 1555 1.49 LINK C8 DG J1906 N AF J1926 1555 1555 1.49 LINK OD2 ASP A 7 CA CA A 415 1555 1555 2.33 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.33 LINK O PHE A 8 CA CA A 416 1555 1555 2.31 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.68 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.29 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.33 LINK O ALA A 181 CA CA A 417 1555 1555 2.32 LINK O ILE A 186 CA CA A 417 1555 1555 2.31 LINK O2A DGT A 414 CA CA A 415 1555 1555 2.33 LINK O1G DGT A 414 CA CA A 416 1555 1555 2.97 LINK O1B DGT A 414 CA CA A 416 1555 1555 2.26 LINK O2A DGT A 414 CA CA A 416 1555 1555 2.32 LINK OD2 ASP B1007 CA CA B1415 1555 1555 2.35 LINK OD1 ASP B1007 CA CA B1416 1555 1555 2.33 LINK O PHE B1008 CA CA B1416 1555 1555 2.34 LINK OD1 ASP B1105 CA CA B1415 1555 1555 2.33 LINK OD2 ASP B1105 CA CA B1415 1555 1555 2.92 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.30 LINK OE2 GLU B1106 CA CA B1415 1555 1555 2.33 LINK O ALA B1181 CA CA B1417 1555 1555 2.32 LINK O ILE B1186 CA CA B1417 1555 1555 2.33 LINK O2A DGT B1414 CA CA B1415 1555 1555 2.32 LINK O1B DGT B1414 CA CA B1416 1555 1555 2.33 LINK O2A DGT B1414 CA CA B1416 1555 1555 2.40 SITE 1 AC1 16 ASP A 7 PHE A 8 TYR A 10 PHE A 11 SITE 2 AC1 16 TYR A 12 ALA A 44 THR A 45 TYR A 48 SITE 3 AC1 16 ARG A 51 ALA A 57 ASP A 105 LYS A 159 SITE 4 AC1 16 CA A 415 CA A 416 DC E 905 AF E 926 SITE 1 AC2 5 ASP A 7 ASP A 105 GLU A 106 DGT A 414 SITE 2 AC2 5 CA A 416 SITE 1 AC3 5 ASP A 7 PHE A 8 ASP A 105 DGT A 414 SITE 2 AC3 5 CA A 415 SITE 1 AC4 6 ALA A 181 ILE A 186 HOH A 513 HOH A 516 SITE 2 AC4 6 HOH D 3 HOH D 515 SITE 1 AC5 7 ALA A 102 SER A 103 ILE A 104 ARG A 240 SITE 2 AC5 7 DG D 813 DT E 908 DA E 909 SITE 1 AC6 16 HOH B 29 ASP B1007 ASP B1009 TYR B1010 SITE 2 AC6 16 VAL B1032 ALA B1044 THR B1045 TYR B1048 SITE 3 AC6 16 ARG B1051 ALA B1057 GLY B1058 ASP B1105 SITE 4 AC6 16 CA B1415 CA B1416 DC J1905 AF J1926 SITE 1 AC7 5 ASP B1007 ASP B1105 GLU B1106 DGT B1414 SITE 2 AC7 5 CA B1416 SITE 1 AC8 5 ASP B1007 PHE B1008 ASP B1105 DGT B1414 SITE 2 AC8 5 CA B1415 SITE 1 AC9 8 ALA B1181 VAL B1183 ILE B1186 HOH B1511 SITE 2 AC9 8 HOH B1514 HOH B1515 HOH B1516 DG H1813 SITE 1 BC1 5 DGT A 414 DG D 813 2DA D 814 DG E 906 SITE 2 BC1 5 DC E 907 SITE 1 BC2 4 DGT B1414 DG H1813 DG J1906 DC J1907 CRYST1 52.811 110.948 100.772 90.00 101.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018935 0.000000 0.003812 0.00000 SCALE2 0.000000 0.009013 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010122 0.00000