PDB Short entry for 3KI1 HEADER TRANSFERASE,TOXIN 31-OCT-09 3KI1 TITLE CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX TITLE 2 WITH INHIBITOR GP-F COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLIX TOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 459-665; COMPND 5 EC: 2.4.2.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: TP; SOURCE 5 GENE: CHXA, TOXA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28+ KEYWDS ADP-RIBOSYL TRANSFERASE, ALPHA-BETA COMPLEX, DIPHTHAMIDE, KEYWDS 2 TRANSFERASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR R.JORGENSEN,P.R.EDWARDS,A.R.MERRILL REVDAT 2 06-SEP-23 3KI1 1 REMARK SEQADV REVDAT 1 27-OCT-10 3KI1 0 JRNL AUTH R.JORGENSEN,P.R.EDWARDS,A.R.MERRILL JRNL TITL STRUCTURE FUNCTION ANALYSIS OF SOLUBLE INHIBITORS OF CHOLIX JRNL TITL 2 TOXIN FROM VIBRIO CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 37792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1881 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1922 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 94 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.066 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.193 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1638 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2236 ; 1.611 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 198 ; 5.887 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 77 ;28.106 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 243 ;13.415 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;17.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1287 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 674 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1121 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 158 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.153 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.105 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1015 ; 1.126 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1579 ; 1.615 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 750 ; 2.697 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 656 ; 3.675 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 423 A 436 REMARK 3 ORIGIN FOR THE GROUP (A): 39.2797 54.2170 14.3481 REMARK 3 T TENSOR REMARK 3 T11: -0.0896 T22: 0.0455 REMARK 3 T33: 0.1302 T12: 0.0112 REMARK 3 T13: 0.0028 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 4.6019 L22: 13.7523 REMARK 3 L33: 3.0354 L12: 6.0570 REMARK 3 L13: 3.7361 L23: 4.8038 REMARK 3 S TENSOR REMARK 3 S11: -0.3089 S12: 0.1941 S13: -0.0748 REMARK 3 S21: -0.0130 S22: 0.2740 S23: -0.1030 REMARK 3 S31: 0.0518 S32: 0.2997 S33: 0.0349 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2150 65.1846 10.6300 REMARK 3 T TENSOR REMARK 3 T11: -0.0387 T22: 0.0645 REMARK 3 T33: 0.0380 T12: 0.0031 REMARK 3 T13: 0.0246 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.6049 L22: 1.5586 REMARK 3 L33: 0.7095 L12: 0.0352 REMARK 3 L13: 0.1618 L23: -0.2616 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.0224 S13: 0.0429 REMARK 3 S21: -0.1331 S22: -0.0239 S23: -0.1509 REMARK 3 S31: 0.0197 S32: 0.1373 S33: 0.0206 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 487 A 491 REMARK 3 ORIGIN FOR THE GROUP (A): 13.6358 64.1464 -2.9438 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0815 REMARK 3 T33: 0.0546 T12: 0.0263 REMARK 3 T13: -0.0691 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 29.4637 L22: 6.7084 REMARK 3 L33: 7.0276 L12: -8.3249 REMARK 3 L13: -0.1571 L23: -0.9424 REMARK 3 S TENSOR REMARK 3 S11: 0.6132 S12: 1.0360 S13: -1.2259 REMARK 3 S21: -0.1519 S22: -0.2965 S23: 0.5085 REMARK 3 S31: -0.1598 S32: -0.4317 S33: -0.3166 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 492 A 508 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3222 59.2122 12.5949 REMARK 3 T TENSOR REMARK 3 T11: -0.0249 T22: 0.0705 REMARK 3 T33: 0.0445 T12: -0.0078 REMARK 3 T13: -0.0097 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 0.2053 L22: 1.3913 REMARK 3 L33: 1.5015 L12: -0.4386 REMARK 3 L13: 0.1508 L23: 0.4727 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: -0.0646 S13: -0.0246 REMARK 3 S21: 0.0008 S22: 0.0196 S23: 0.1050 REMARK 3 S31: 0.0564 S32: -0.1391 S33: -0.0460 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 509 A 522 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2438 37.5711 10.3472 REMARK 3 T TENSOR REMARK 3 T11: 0.0884 T22: 0.0060 REMARK 3 T33: -0.0304 T12: -0.0611 REMARK 3 T13: 0.0444 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 11.4272 L22: 5.4458 REMARK 3 L33: 7.7874 L12: 5.5701 REMARK 3 L13: 8.8339 L23: 3.9924 REMARK 3 S TENSOR REMARK 3 S11: -0.3358 S12: -0.0238 S13: -0.5252 REMARK 3 S21: -0.8516 S22: 0.3597 S23: -0.4722 REMARK 3 S31: -0.5621 S32: 0.0192 S33: -0.0239 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 523 A 544 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9693 69.2341 8.0944 REMARK 3 T TENSOR REMARK 3 T11: -0.0093 T22: 0.0423 REMARK 3 T33: 0.0168 T12: -0.0045 REMARK 3 T13: 0.0160 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.5819 L22: 1.2477 REMARK 3 L33: 0.6092 L12: 0.1857 REMARK 3 L13: 0.0678 L23: -0.4907 REMARK 3 S TENSOR REMARK 3 S11: -0.0156 S12: 0.0006 S13: 0.0204 REMARK 3 S21: -0.0460 S22: 0.0293 S23: -0.0799 REMARK 3 S31: -0.0399 S32: 0.0327 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 545 A 554 REMARK 3 ORIGIN FOR THE GROUP (A): 6.9966 71.9981 3.8582 REMARK 3 T TENSOR REMARK 3 T11: -0.0936 T22: 0.0904 REMARK 3 T33: 0.0626 T12: 0.0345 REMARK 3 T13: -0.0428 T23: 0.0612 REMARK 3 L TENSOR REMARK 3 L11: 4.5410 L22: 6.5087 REMARK 3 L33: 8.5125 L12: 3.3816 REMARK 3 L13: -4.1773 L23: 1.2062 REMARK 3 S TENSOR REMARK 3 S11: -0.3500 S12: 0.0279 S13: 0.1102 REMARK 3 S21: -0.0387 S22: 0.2505 S23: 0.4977 REMARK 3 S31: 0.0741 S32: -0.5483 S33: 0.0995 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 555 A 600 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6630 69.5373 3.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.0024 T22: 0.0469 REMARK 3 T33: 0.0084 T12: 0.0142 REMARK 3 T13: -0.0098 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.4638 L22: 1.1181 REMARK 3 L33: 0.8544 L12: 0.0660 REMARK 3 L13: 0.1431 L23: -0.2683 REMARK 3 S TENSOR REMARK 3 S11: 0.0461 S12: -0.0031 S13: 0.0090 REMARK 3 S21: -0.2109 S22: 0.0169 S23: 0.1097 REMARK 3 S31: -0.0054 S32: -0.0078 S33: -0.0630 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 601 A 615 REMARK 3 ORIGIN FOR THE GROUP (A): 23.0902 54.5924 21.7842 REMARK 3 T TENSOR REMARK 3 T11: 0.0070 T22: 0.0543 REMARK 3 T33: 0.0085 T12: -0.0013 REMARK 3 T13: 0.0053 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 1.4187 L22: 8.7468 REMARK 3 L33: 3.6932 L12: 2.2537 REMARK 3 L13: 1.4535 L23: 5.2616 REMARK 3 S TENSOR REMARK 3 S11: -0.0089 S12: -0.0441 S13: -0.0180 REMARK 3 S21: 0.3379 S22: -0.0453 S23: 0.1568 REMARK 3 S31: 0.2497 S32: -0.0169 S33: 0.0541 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 616 A 628 REMARK 3 ORIGIN FOR THE GROUP (A): 24.7780 74.5214 15.9804 REMARK 3 T TENSOR REMARK 3 T11: 0.0123 T22: 0.0387 REMARK 3 T33: 0.0256 T12: 0.0082 REMARK 3 T13: 0.0119 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 3.6747 L22: 1.9509 REMARK 3 L33: 4.2668 L12: -2.0541 REMARK 3 L13: 3.4212 L23: -2.4584 REMARK 3 S TENSOR REMARK 3 S11: -0.1289 S12: -0.1549 S13: 0.1017 REMARK 3 S21: 0.1310 S22: 0.1339 S23: -0.0370 REMARK 3 S31: -0.3593 S32: -0.0581 S33: -0.0050 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : WHITE BEAM SLITS, CRYO-COOLED REMARK 200 FIRST AND SAGITTALLY BENT SECOND REMARK 200 CRYSTAL OF DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), VERTICALLY REMARK 200 FOCUSING MIRROR (VFM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37801 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Q6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG-8000, 0.02 M KH2PO4, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.06000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.04000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.89500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.04000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.89500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 477 REMARK 465 PRO A 478 REMARK 465 ARG A 479 REMARK 465 GLY A 480 REMARK 465 ASN A 481 REMARK 465 ASN A 482 REMARK 465 THR A 483 REMARK 465 GLU A 484 REMARK 465 ASN A 485 REMARK 465 GLU A 486 REMARK 465 ARG A 629 REMARK 465 LYS A 630 REMARK 465 ASP A 631 REMARK 465 GLU A 632 REMARK 465 LEU A 633 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 473 129.62 -171.91 REMARK 500 ARG A 566 -114.39 -104.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 COMPOUND G9F IS NAMED COMPOUND P2 IN THE PRIMARY CITATION REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G9F A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G9F A 635 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ESS RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE 1,8-NAPHTHALIMIDE INHIBITOR REMARK 900 RELATED ID: 2Q6M RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE PJ34 INHIBITOR REMARK 900 RELATED ID: 2Q5T RELATED DB: PDB REMARK 900 FULL-LENGTH CHOLIX TOXIN FROM VIBRIO CHOLERAE REMARK 900 RELATED ID: 3KI0 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-D REMARK 900 RELATED ID: 3KI2 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-G REMARK 900 RELATED ID: 3KI3 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-H REMARK 900 RELATED ID: 3KI4 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-P REMARK 900 RELATED ID: 3KI5 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-M REMARK 900 RELATED ID: 3KI6 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-L REMARK 900 RELATED ID: 3KI7 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-I DBREF 3KI1 A 427 633 UNP Q5EK40 Q5EK40_VIBCH 459 665 SEQADV 3KI1 GLY A 423 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI1 SER A 424 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI1 HIS A 425 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI1 MET A 426 UNP Q5EK40 EXPRESSION TAG SEQRES 1 A 211 GLY SER HIS MET ALA VAL ILE THR PRO GLN GLY VAL THR SEQRES 2 A 211 ASN TRP THR TYR GLN GLU LEU GLU ALA THR HIS GLN ALA SEQRES 3 A 211 LEU THR ARG GLU GLY TYR VAL PHE VAL GLY TYR HIS GLY SEQRES 4 A 211 THR ASN HIS VAL ALA ALA GLN THR ILE VAL ASN ARG ILE SEQRES 5 A 211 ALA PRO VAL PRO ARG GLY ASN ASN THR GLU ASN GLU GLU SEQRES 6 A 211 LYS TRP GLY GLY LEU TYR VAL ALA THR HIS ALA GLU VAL SEQRES 7 A 211 ALA HIS GLY TYR ALA ARG ILE LYS GLU GLY THR GLY GLU SEQRES 8 A 211 TYR GLY LEU PRO THR ARG ALA GLU ARG ASP ALA ARG GLY SEQRES 9 A 211 VAL MET LEU ARG VAL TYR ILE PRO ARG ALA SER LEU GLU SEQRES 10 A 211 ARG PHE TYR ARG THR ASN THR PRO LEU GLU ASN ALA GLU SEQRES 11 A 211 GLU HIS ILE THR GLN VAL ILE GLY HIS SER LEU PRO LEU SEQRES 12 A 211 ARG ASN GLU ALA PHE THR GLY PRO GLU SER ALA GLY GLY SEQRES 13 A 211 GLU ASP GLU THR VAL ILE GLY TRP ASP MET ALA ILE HIS SEQRES 14 A 211 ALA VAL ALA ILE PRO SER THR ILE PRO GLY ASN ALA TYR SEQRES 15 A 211 GLU GLU LEU ALA ILE ASP GLU GLU ALA VAL ALA LYS GLU SEQRES 16 A 211 GLN SER ILE SER THR LYS PRO PRO TYR LYS GLU ARG LYS SEQRES 17 A 211 ASP GLU LEU HET G9F A 1 27 HET G9F A 635 27 HETNAM G9F 2-{4-[3-(DIMETHYLAMINO)PROPOXY]PHENYL}-5,6- HETNAM 2 G9F DIHYDROIMIDAZO[4,5,1-JK][1,4]BENZODIAZEPIN-7(4H)-ONE HETSYN G9F 1-[4-(3-DIMETHYLAMINO-PROPOXY)-PHENYL]-8,9-DIHYDRO-7H- HETSYN 2 G9F 2,7,9A-TRIAZA-BENZO[CD]AZULEN-6 FORMUL 2 G9F 2(C21 H24 N4 O2) FORMUL 4 HOH *260(H2 O) HELIX 1 1 THR A 438 GLU A 452 1 15 HELIX 2 2 ASN A 463 ARG A 473 1 11 HELIX 3 3 HIS A 497 GLY A 503 1 7 HELIX 4 4 GLY A 512 LEU A 516 5 5 HELIX 5 5 THR A 518 ALA A 524 1 7 HELIX 6 6 ALA A 536 GLU A 539 5 4 HELIX 7 7 PRO A 547 ASN A 550 5 4 HELIX 8 8 ALA A 551 GLY A 560 1 10 HELIX 9 9 GLY A 585 ILE A 590 1 6 HELIX 10 10 ASP A 610 GLN A 618 1 9 HELIX 11 11 SER A 619 SER A 621 5 3 SHEET 1 A 2 VAL A 428 THR A 430 0 SHEET 2 A 2 GLY A 433 THR A 435 -1 O THR A 435 N VAL A 428 SHEET 1 B 3 TYR A 454 THR A 462 0 SHEET 2 B 3 VAL A 527 PRO A 534 -1 O VAL A 531 N VAL A 457 SHEET 3 B 3 VAL A 593 PRO A 600 -1 O ILE A 595 N ARG A 530 SHEET 1 C 4 LEU A 492 VAL A 494 0 SHEET 2 C 4 ASP A 580 ILE A 584 -1 O THR A 582 N VAL A 494 SHEET 3 C 4 ALA A 569 PRO A 573 -1 N PHE A 570 O VAL A 583 SHEET 4 C 4 PHE A 541 ARG A 543 1 N TYR A 542 O ALA A 569 CISPEP 1 LEU A 563 PRO A 564 0 5.96 SITE 1 AC1 8 HOH A 14 HOH A 249 HIS A 460 GLY A 461 SITE 2 AC1 8 TYR A 493 ALA A 501 TYR A 504 GLU A 581 SITE 1 AC2 11 HOH A 109 HOH A 124 HOH A 265 THR A 445 SITE 2 AC2 11 ALA A 448 LEU A 449 TYR A 454 ASN A 550 SITE 3 AC2 11 ALA A 576 ILE A 590 ALA A 592 CRYST1 40.120 65.790 78.080 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015200 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012807 0.00000