PDB Short entry for 3KI4 HEADER TRANSFERASE,TOXIN 31-OCT-09 3KI4 TITLE CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX TITLE 2 WITH INHIBITOR GP-P COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLIX TOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 459-665; COMPND 5 EC: 2.4.2.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: TP; SOURCE 5 GENE: CHXA, TOXA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28+ KEYWDS ADP-RIBOSYL TRANSFERASE, ALPHA-BETA COMPLEX, DIPHTHAMIDE, KEYWDS 2 TRANSFERASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR R.JORGENSEN,P.R.EDWARDS,A.R.MERRILL REVDAT 3 06-SEP-23 3KI4 1 REMARK SEQADV REVDAT 2 01-NOV-17 3KI4 1 REMARK REVDAT 1 27-OCT-10 3KI4 0 JRNL AUTH R.JORGENSEN,P.R.EDWARDS,A.R.MERRILL JRNL TITL STRUCTURE FUNCTION ANALYSIS OF SOLUBLE INHIBITORS OF CHOLIX JRNL TITL 2 TOXIN FROM VIBRIO CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 22125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1142 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 999 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 61.27 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 265 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.104 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.686 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1640 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2240 ; 1.407 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 201 ; 5.796 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;33.130 ;24.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 247 ;12.108 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.951 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 242 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1283 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 738 ; 0.203 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1144 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 202 ; 0.129 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 52 ; 0.167 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.114 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1025 ; 0.797 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1608 ; 1.216 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 710 ; 2.283 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 631 ; 3.514 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 423 A 435 REMARK 3 ORIGIN FOR THE GROUP (A): 1.8750 11.4130 -18.9670 REMARK 3 T TENSOR REMARK 3 T11: -0.0172 T22: 0.0124 REMARK 3 T33: 0.1096 T12: 0.0055 REMARK 3 T13: 0.0327 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 11.7525 L22: 22.4441 REMARK 3 L33: 4.0589 L12: -7.6574 REMARK 3 L13: -2.4518 L23: 7.5948 REMARK 3 S TENSOR REMARK 3 S11: 0.0563 S12: 0.1939 S13: 0.4679 REMARK 3 S21: -0.3738 S22: 0.2292 S23: -0.6515 REMARK 3 S31: 0.0322 S32: 0.1945 S33: -0.2855 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 436 A 449 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1470 -0.6420 -22.5100 REMARK 3 T TENSOR REMARK 3 T11: 0.0395 T22: 0.0550 REMARK 3 T33: 0.0565 T12: -0.0117 REMARK 3 T13: 0.0241 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.5765 L22: 5.2735 REMARK 3 L33: 2.4768 L12: -0.9416 REMARK 3 L13: -0.5043 L23: -1.8788 REMARK 3 S TENSOR REMARK 3 S11: 0.0264 S12: 0.1841 S13: -0.1200 REMARK 3 S21: -0.2379 S22: 0.0105 S23: -0.1671 REMARK 3 S31: 0.0038 S32: 0.0144 S33: -0.0369 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 450 A 471 REMARK 3 ORIGIN FOR THE GROUP (A): -4.8330 2.3820 -11.9270 REMARK 3 T TENSOR REMARK 3 T11: 0.0450 T22: 0.0568 REMARK 3 T33: 0.0569 T12: 0.0032 REMARK 3 T13: 0.0047 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.4775 L22: 1.7671 REMARK 3 L33: 0.1216 L12: -0.1059 REMARK 3 L13: 0.3132 L23: -0.3343 REMARK 3 S TENSOR REMARK 3 S11: -0.0326 S12: -0.0488 S13: 0.0365 REMARK 3 S21: 0.0109 S22: 0.0015 S23: -0.0324 REMARK 3 S31: 0.0120 S32: 0.0450 S33: 0.0311 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 472 A 487 REMARK 3 ORIGIN FOR THE GROUP (A): -12.3520 6.5610 1.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.1245 T22: 0.0527 REMARK 3 T33: 0.0846 T12: -0.0209 REMARK 3 T13: 0.0414 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 12.5640 L22: 1.4441 REMARK 3 L33: 4.7226 L12: 3.3403 REMARK 3 L13: -7.2105 L23: -1.7227 REMARK 3 S TENSOR REMARK 3 S11: 0.4452 S12: -0.4346 S13: 1.1852 REMARK 3 S21: 0.3161 S22: 0.0049 S23: 0.1761 REMARK 3 S31: -0.2458 S32: 0.2316 S33: -0.4500 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 488 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): -17.8480 1.5870 -8.9960 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0734 REMARK 3 T33: 0.0476 T12: -0.0065 REMARK 3 T13: 0.0052 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.0704 L22: 0.8479 REMARK 3 L33: 5.5940 L12: 0.2180 REMARK 3 L13: -0.4630 L23: -0.7678 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: 0.0033 S13: 0.0993 REMARK 3 S21: 0.0163 S22: 0.0975 S23: 0.0802 REMARK 3 S31: 0.0485 S32: -0.1943 S33: -0.1498 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 530 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5920 19.3830 -14.3470 REMARK 3 T TENSOR REMARK 3 T11: 0.0500 T22: 0.0531 REMARK 3 T33: 0.0639 T12: 0.0010 REMARK 3 T13: -0.0016 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.3374 L22: 3.9255 REMARK 3 L33: 0.2125 L12: -0.6303 REMARK 3 L13: 0.0565 L23: -0.1578 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.0054 S13: 0.0230 REMARK 3 S21: 0.2145 S22: 0.0174 S23: -0.0426 REMARK 3 S31: -0.0148 S32: -0.0513 S33: 0.0084 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 531 A 545 REMARK 3 ORIGIN FOR THE GROUP (A): -11.7050 -10.1580 -7.0900 REMARK 3 T TENSOR REMARK 3 T11: 0.0487 T22: 0.0598 REMARK 3 T33: 0.0443 T12: 0.0099 REMARK 3 T13: 0.0043 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 1.4574 L22: 1.5981 REMARK 3 L33: 0.6568 L12: 0.0843 REMARK 3 L13: 0.5159 L23: 0.0868 REMARK 3 S TENSOR REMARK 3 S11: -0.0796 S12: -0.0756 S13: -0.1582 REMARK 3 S21: 0.0300 S22: 0.0314 S23: -0.1165 REMARK 3 S31: 0.0362 S32: -0.0191 S33: 0.0482 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 546 A 565 REMARK 3 ORIGIN FOR THE GROUP (A): -23.9880 -6.8030 1.4880 REMARK 3 T TENSOR REMARK 3 T11: 0.0513 T22: 0.0688 REMARK 3 T33: 0.0024 T12: -0.0125 REMARK 3 T13: 0.0222 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 3.4871 L22: 1.5099 REMARK 3 L33: 3.5065 L12: 1.0772 REMARK 3 L13: 1.6013 L23: -0.3452 REMARK 3 S TENSOR REMARK 3 S11: 0.1184 S12: -0.3371 S13: -0.0366 REMARK 3 S21: 0.1717 S22: -0.0123 S23: 0.1213 REMARK 3 S31: -0.0824 S32: -0.2947 S33: -0.1061 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 566 A 616 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9980 2.2450 -12.9060 REMARK 3 T TENSOR REMARK 3 T11: 0.0346 T22: 0.0571 REMARK 3 T33: 0.0372 T12: 0.0046 REMARK 3 T13: 0.0025 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.6600 L22: 0.6643 REMARK 3 L33: 0.5127 L12: 0.1246 REMARK 3 L13: 0.1007 L23: -0.1439 REMARK 3 S TENSOR REMARK 3 S11: 0.0069 S12: -0.0366 S13: -0.0044 REMARK 3 S21: 0.0183 S22: -0.0004 S23: 0.0034 REMARK 3 S31: -0.0189 S32: -0.0080 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 617 A 628 REMARK 3 ORIGIN FOR THE GROUP (A): -13.1060 -9.0630 -16.9190 REMARK 3 T TENSOR REMARK 3 T11: 0.0479 T22: 0.0597 REMARK 3 T33: 0.0668 T12: -0.0138 REMARK 3 T13: -0.0096 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 2.6736 L22: 3.4687 REMARK 3 L33: 6.7937 L12: 2.2400 REMARK 3 L13: -4.2613 L23: -3.6251 REMARK 3 S TENSOR REMARK 3 S11: -0.2057 S12: 0.1916 S13: -0.0994 REMARK 3 S21: -0.1313 S22: 0.2447 S23: -0.0030 REMARK 3 S31: 0.2316 S32: -0.2751 S33: -0.0391 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : WHITE BEAM SLITS, CRYO-COOLED REMARK 200 FIRST AND SAGITTALLY BENT SECOND REMARK 200 CRYSTAL OF DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), VERTICALLY REMARK 200 FOCUSING MIRROR (VFM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22167 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 65.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Q6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG-8000, 0.02 M KH2PO4, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.76250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.11300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.34250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.11300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.76250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.34250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 423 REMARK 465 SER A 424 REMARK 465 PRO A 478 REMARK 465 ARG A 479 REMARK 465 GLY A 480 REMARK 465 ASN A 481 REMARK 465 ASN A 482 REMARK 465 ARG A 629 REMARK 465 LYS A 630 REMARK 465 ASP A 631 REMARK 465 GLU A 632 REMARK 465 LEU A 633 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 473 132.24 -171.10 REMARK 500 ARG A 566 -112.88 -100.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 COMPOUND G9P IS NAMED COMPOUND P8 IN THE PRIMARY CITATION REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G9P A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3968 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 635 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ESS RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE 1,8-NAPHTHALIMIDE INHIBITOR REMARK 900 RELATED ID: 2Q6M RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE PJ34 INHIBITOR REMARK 900 RELATED ID: 2Q5T RELATED DB: PDB REMARK 900 FULL-LENGTH CHOLIX TOXIN FROM VIBRIO CHOLERAE REMARK 900 RELATED ID: 3KI0 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-D REMARK 900 RELATED ID: 3KI1 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-F REMARK 900 RELATED ID: 3KI2 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-G REMARK 900 RELATED ID: 3KI3 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-H REMARK 900 RELATED ID: 3KI5 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-M REMARK 900 RELATED ID: 3KI6 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-L REMARK 900 RELATED ID: 3KI7 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-I DBREF 3KI4 A 427 633 UNP Q5EK40 Q5EK40_VIBCH 459 665 SEQADV 3KI4 GLY A 423 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI4 SER A 424 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI4 HIS A 425 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI4 MET A 426 UNP Q5EK40 EXPRESSION TAG SEQRES 1 A 211 GLY SER HIS MET ALA VAL ILE THR PRO GLN GLY VAL THR SEQRES 2 A 211 ASN TRP THR TYR GLN GLU LEU GLU ALA THR HIS GLN ALA SEQRES 3 A 211 LEU THR ARG GLU GLY TYR VAL PHE VAL GLY TYR HIS GLY SEQRES 4 A 211 THR ASN HIS VAL ALA ALA GLN THR ILE VAL ASN ARG ILE SEQRES 5 A 211 ALA PRO VAL PRO ARG GLY ASN ASN THR GLU ASN GLU GLU SEQRES 6 A 211 LYS TRP GLY GLY LEU TYR VAL ALA THR HIS ALA GLU VAL SEQRES 7 A 211 ALA HIS GLY TYR ALA ARG ILE LYS GLU GLY THR GLY GLU SEQRES 8 A 211 TYR GLY LEU PRO THR ARG ALA GLU ARG ASP ALA ARG GLY SEQRES 9 A 211 VAL MET LEU ARG VAL TYR ILE PRO ARG ALA SER LEU GLU SEQRES 10 A 211 ARG PHE TYR ARG THR ASN THR PRO LEU GLU ASN ALA GLU SEQRES 11 A 211 GLU HIS ILE THR GLN VAL ILE GLY HIS SER LEU PRO LEU SEQRES 12 A 211 ARG ASN GLU ALA PHE THR GLY PRO GLU SER ALA GLY GLY SEQRES 13 A 211 GLU ASP GLU THR VAL ILE GLY TRP ASP MET ALA ILE HIS SEQRES 14 A 211 ALA VAL ALA ILE PRO SER THR ILE PRO GLY ASN ALA TYR SEQRES 15 A 211 GLU GLU LEU ALA ILE ASP GLU GLU ALA VAL ALA LYS GLU SEQRES 16 A 211 GLN SER ILE SER THR LYS PRO PRO TYR LYS GLU ARG LYS SEQRES 17 A 211 ASP GLU LEU HET G9P A 1 22 HET GOL A3968 6 HET GOL A 635 6 HETNAM G9P (11BR)-3-OXO-1,2,3,11B-TETRAHYDROCHROMENO[4,3,2- HETNAM 2 G9P DE]ISOQUINOLINE-10-SULFONIC ACID HETNAM GOL GLYCEROL HETSYN G9P 1,11B-DIHYDRO-[1]BENZOPYRANO[4,3,2-DE]ISOQUINOLIN- HETSYN 2 G9P 3(2H)-ONE-10-SULPHONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 G9P C15 H11 N O5 S FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *265(H2 O) HELIX 1 1 THR A 438 GLU A 452 1 15 HELIX 2 2 ASN A 463 ARG A 473 1 11 HELIX 3 3 THR A 483 TRP A 489 1 7 HELIX 4 4 HIS A 497 GLY A 503 1 7 HELIX 5 5 GLY A 512 LEU A 516 5 5 HELIX 6 6 THR A 518 ALA A 524 1 7 HELIX 7 7 ALA A 536 GLU A 539 5 4 HELIX 8 8 PRO A 547 ASN A 550 5 4 HELIX 9 9 ALA A 551 GLY A 560 1 10 HELIX 10 10 GLY A 585 ILE A 590 1 6 HELIX 11 11 ASP A 610 GLN A 618 1 9 HELIX 12 12 SER A 619 SER A 621 5 3 SHEET 1 A 2 VAL A 428 THR A 430 0 SHEET 2 A 2 GLY A 433 THR A 435 -1 O THR A 435 N VAL A 428 SHEET 1 B 3 TYR A 454 THR A 462 0 SHEET 2 B 3 VAL A 527 PRO A 534 -1 O VAL A 531 N VAL A 457 SHEET 3 B 3 VAL A 593 PRO A 600 -1 O ILE A 595 N ARG A 530 SHEET 1 C 4 LEU A 492 VAL A 494 0 SHEET 2 C 4 ASP A 580 ILE A 584 -1 O THR A 582 N VAL A 494 SHEET 3 C 4 ALA A 569 PRO A 573 -1 N PHE A 570 O VAL A 583 SHEET 4 C 4 PHE A 541 ARG A 543 1 N TYR A 542 O ALA A 569 CISPEP 1 LEU A 563 PRO A 564 0 4.81 SITE 1 AC1 8 HOH A 23 HOH A 178 HIS A 460 GLY A 461 SITE 2 AC1 8 TYR A 493 ALA A 501 TYR A 504 GLU A 581 SITE 1 AC2 12 HOH A 4 HOH A 11 HOH A 13 HOH A 242 SITE 2 AC2 12 HOH A 250 VAL A 471 ASN A 472 ARG A 473 SITE 3 AC2 12 GLU A 549 ASN A 550 ALA A 576 VAL A 593 SITE 1 AC3 8 HOH A 59 HOH A 155 HIS A 446 PHE A 456 SITE 2 AC3 8 SER A 619 ILE A 620 SER A 621 THR A 622 CRYST1 35.525 64.685 84.226 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028149 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015460 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011873 0.00000