PDB Short entry for 3KI5 HEADER TRANSFERASE,TOXIN 31-OCT-09 3KI5 TITLE CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX TITLE 2 WITH INHIBITOR GP-M COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLIX TOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 459-665; COMPND 5 EC: 2.4.2.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 STRAIN: TP; SOURCE 5 GENE: CHXA, TOXA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ER2566; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28+ KEYWDS ADP-RIBOSYL TRANSFERASE, ALPHA-BETA COMPLEX, DIPHTHAMIDE, KEYWDS 2 TRANSFERASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR R.JORGENSEN,P.R.EDWARDS,A.R.MERRILL REVDAT 3 06-SEP-23 3KI5 1 REMARK SEQADV REVDAT 2 01-NOV-17 3KI5 1 REMARK REVDAT 1 27-OCT-10 3KI5 0 JRNL AUTH R.JORGENSEN,P.R.EDWARDS,A.R.MERRILL JRNL TITL STRUCTURE FUNCTION ANALYSIS OF SOLUBLE INHIBITORS OF CHOLIX JRNL TITL 2 TOXIN FROM VIBRIO CHOLERAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 28871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1456 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1395 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.100 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.065 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.325 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1680 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2298 ; 1.239 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 204 ; 5.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;34.720 ;24.051 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 248 ;13.027 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;11.817 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 244 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1306 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 736 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1158 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 217 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.172 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.106 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1052 ; 0.645 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1638 ; 0.998 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 818 ; 1.585 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 658 ; 2.288 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 423 A 436 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3560 53.0130 14.2910 REMARK 3 T TENSOR REMARK 3 T11: -0.0435 T22: 0.0394 REMARK 3 T33: 0.1851 T12: 0.0439 REMARK 3 T13: 0.0150 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 10.6912 L22: 9.0738 REMARK 3 L33: 3.8271 L12: 9.4649 REMARK 3 L13: 6.1406 L23: 4.9797 REMARK 3 S TENSOR REMARK 3 S11: -0.4034 S12: 0.0432 S13: -0.2538 REMARK 3 S21: -0.1809 S22: 0.1954 S23: -0.3852 REMARK 3 S31: 0.0402 S32: 0.4300 S33: 0.2080 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 437 A 473 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4210 63.6050 11.4140 REMARK 3 T TENSOR REMARK 3 T11: -0.0570 T22: 0.0696 REMARK 3 T33: 0.0868 T12: 0.0091 REMARK 3 T13: 0.0378 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.5582 L22: 1.9906 REMARK 3 L33: 0.8984 L12: 0.1267 REMARK 3 L13: 0.0828 L23: -0.6441 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.0425 S13: 0.0959 REMARK 3 S21: -0.1623 S22: -0.1083 S23: -0.1682 REMARK 3 S31: 0.0452 S32: 0.2006 S33: 0.0981 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 474 A 489 REMARK 3 ORIGIN FOR THE GROUP (A): 17.4740 60.2600 -2.9980 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.0414 REMARK 3 T33: 0.0840 T12: -0.0576 REMARK 3 T13: -0.0699 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 29.0538 L22: 4.7459 REMARK 3 L33: 2.4571 L12: -4.6662 REMARK 3 L13: 3.0754 L23: -0.5509 REMARK 3 S TENSOR REMARK 3 S11: 0.1587 S12: 1.1390 S13: -1.9636 REMARK 3 S21: -0.4263 S22: -0.0706 S23: 0.7741 REMARK 3 S31: 0.4614 S32: -0.1481 S33: -0.0881 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 490 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 20.3500 58.7700 11.8320 REMARK 3 T TENSOR REMARK 3 T11: -0.0139 T22: 0.0319 REMARK 3 T33: 0.0893 T12: -0.0015 REMARK 3 T13: -0.0017 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.7241 L22: 1.5827 REMARK 3 L33: 0.7852 L12: -0.1064 REMARK 3 L13: -0.0110 L23: 0.2152 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.0482 S13: -0.0138 REMARK 3 S21: -0.0333 S22: 0.0740 S23: 0.1818 REMARK 3 S31: 0.0648 S32: -0.1527 S33: -0.0523 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 508 A 522 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2270 37.1870 10.1430 REMARK 3 T TENSOR REMARK 3 T11: 0.1644 T22: -0.0387 REMARK 3 T33: 0.0239 T12: -0.0500 REMARK 3 T13: 0.1236 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 11.5182 L22: 8.3776 REMARK 3 L33: 11.8874 L12: 7.8247 REMARK 3 L13: 7.7443 L23: 5.4706 REMARK 3 S TENSOR REMARK 3 S11: -0.6398 S12: -0.0442 S13: -0.6276 REMARK 3 S21: -1.3313 S22: 0.5313 S23: -0.6931 REMARK 3 S31: -0.7814 S32: -0.2308 S33: 0.1085 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 523 A 568 REMARK 3 ORIGIN FOR THE GROUP (A): 18.6870 69.8440 3.2030 REMARK 3 T TENSOR REMARK 3 T11: -0.0229 T22: 0.0211 REMARK 3 T33: 0.0797 T12: -0.0078 REMARK 3 T13: -0.0043 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.5061 L22: 1.6577 REMARK 3 L33: 0.7659 L12: 0.0424 REMARK 3 L13: 0.0791 L23: -0.0582 REMARK 3 S TENSOR REMARK 3 S11: -0.0612 S12: 0.0323 S13: 0.0405 REMARK 3 S21: -0.1682 S22: 0.0512 S23: 0.1430 REMARK 3 S31: -0.0408 S32: -0.0063 S33: 0.0100 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 569 A 605 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8740 62.4550 8.8950 REMARK 3 T TENSOR REMARK 3 T11: -0.0371 T22: 0.0329 REMARK 3 T33: 0.0593 T12: -0.0034 REMARK 3 T13: -0.0030 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.3670 L22: 1.6418 REMARK 3 L33: 1.4058 L12: 0.2036 REMARK 3 L13: -0.3183 L23: -0.7541 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.0117 S13: 0.0053 REMARK 3 S21: -0.1540 S22: 0.0051 S23: 0.1101 REMARK 3 S31: 0.0964 S32: 0.0115 S33: -0.0358 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 606 A 628 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3990 66.4310 19.3270 REMARK 3 T TENSOR REMARK 3 T11: -0.0285 T22: 0.0223 REMARK 3 T33: 0.0646 T12: 0.0113 REMARK 3 T13: 0.0212 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.4488 L22: 1.4695 REMARK 3 L33: 2.2452 L12: 0.5477 REMARK 3 L13: -0.1157 L23: -0.8360 REMARK 3 S TENSOR REMARK 3 S11: -0.0357 S12: -0.0678 S13: 0.0305 REMARK 3 S21: 0.2619 S22: 0.0373 S23: 0.0527 REMARK 3 S31: -0.1538 S32: 0.0570 S33: -0.0015 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : WHITE BEAM SLITS, CRYO-COOLED REMARK 200 FIRST AND SAGITTALLY BENT SECOND REMARK 200 CRYSTAL OF DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR (DCM), VERTICALLY REMARK 200 FOCUSING MIRROR (VFM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28938 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Q6M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG-8000, 0.02 M KH2PO4, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.14200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.91800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.29100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.91800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.14200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.29100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 478 REMARK 465 ARG A 479 REMARK 465 GLY A 480 REMARK 465 ASN A 481 REMARK 465 ASN A 482 REMARK 465 THR A 483 REMARK 465 GLU A 484 REMARK 465 ARG A 629 REMARK 465 LYS A 630 REMARK 465 ASP A 631 REMARK 465 GLU A 632 REMARK 465 LEU A 633 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 566 -112.63 -102.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 COMPOUND G9M IS NAMED COMPOUND P7 IN THE PRIMARY CITATION REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G9M A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G9M A 635 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ESS RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE 1,8-NAPHTHALIMIDE INHIBITOR REMARK 900 RELATED ID: 2Q6M RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH THE PJ34 INHIBITOR REMARK 900 RELATED ID: 2Q5T RELATED DB: PDB REMARK 900 FULL-LENGTH CHOLIX TOXIN FROM VIBRIO CHOLERAE REMARK 900 RELATED ID: 3KI0 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-D REMARK 900 RELATED ID: 3KI1 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-F REMARK 900 RELATED ID: 3KI2 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-G REMARK 900 RELATED ID: 3KI3 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-H REMARK 900 RELATED ID: 3KI4 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-P REMARK 900 RELATED ID: 3KI6 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-L REMARK 900 RELATED ID: 3KI7 RELATED DB: PDB REMARK 900 CATALYTIC FRAGMENT OF CHOLIX TOXIN FROM VIBRIO CHOLERAE IN COMPLEX REMARK 900 WITH INHIBITOR GP-I DBREF 3KI5 A 427 633 UNP Q5EK40 Q5EK40_VIBCH 459 665 SEQADV 3KI5 GLY A 423 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI5 SER A 424 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI5 HIS A 425 UNP Q5EK40 EXPRESSION TAG SEQADV 3KI5 MET A 426 UNP Q5EK40 EXPRESSION TAG SEQRES 1 A 211 GLY SER HIS MET ALA VAL ILE THR PRO GLN GLY VAL THR SEQRES 2 A 211 ASN TRP THR TYR GLN GLU LEU GLU ALA THR HIS GLN ALA SEQRES 3 A 211 LEU THR ARG GLU GLY TYR VAL PHE VAL GLY TYR HIS GLY SEQRES 4 A 211 THR ASN HIS VAL ALA ALA GLN THR ILE VAL ASN ARG ILE SEQRES 5 A 211 ALA PRO VAL PRO ARG GLY ASN ASN THR GLU ASN GLU GLU SEQRES 6 A 211 LYS TRP GLY GLY LEU TYR VAL ALA THR HIS ALA GLU VAL SEQRES 7 A 211 ALA HIS GLY TYR ALA ARG ILE LYS GLU GLY THR GLY GLU SEQRES 8 A 211 TYR GLY LEU PRO THR ARG ALA GLU ARG ASP ALA ARG GLY SEQRES 9 A 211 VAL MET LEU ARG VAL TYR ILE PRO ARG ALA SER LEU GLU SEQRES 10 A 211 ARG PHE TYR ARG THR ASN THR PRO LEU GLU ASN ALA GLU SEQRES 11 A 211 GLU HIS ILE THR GLN VAL ILE GLY HIS SER LEU PRO LEU SEQRES 12 A 211 ARG ASN GLU ALA PHE THR GLY PRO GLU SER ALA GLY GLY SEQRES 13 A 211 GLU ASP GLU THR VAL ILE GLY TRP ASP MET ALA ILE HIS SEQRES 14 A 211 ALA VAL ALA ILE PRO SER THR ILE PRO GLY ASN ALA TYR SEQRES 15 A 211 GLU GLU LEU ALA ILE ASP GLU GLU ALA VAL ALA LYS GLU SEQRES 16 A 211 GLN SER ILE SER THR LYS PRO PRO TYR LYS GLU ARG LYS SEQRES 17 A 211 ASP GLU LEU HET G9M A 1 30 HET G9M A 635 30 HETNAM G9M N-(6-OXO-5,6-DIHYDROBENZO[C][1,5]NAPHTHYRIDIN-2-YL)-2- HETNAM 2 G9M (4-PYRROLIDIN-1-YLPIPERIDIN-1-YL)ACETAMIDE FORMUL 2 G9M 2(C23 H27 N5 O2) FORMUL 4 HOH *280(H2 O) HELIX 1 1 THR A 438 GLY A 453 1 16 HELIX 2 2 ASN A 463 ARG A 473 1 11 HELIX 3 3 HIS A 497 GLY A 503 1 7 HELIX 4 4 GLY A 512 LEU A 516 5 5 HELIX 5 5 THR A 518 ALA A 524 1 7 HELIX 6 6 ALA A 536 GLU A 539 5 4 HELIX 7 7 PRO A 547 ASN A 550 5 4 HELIX 8 8 ALA A 551 GLY A 560 1 10 HELIX 9 9 GLY A 585 ILE A 590 1 6 HELIX 10 10 ASP A 610 GLN A 618 1 9 HELIX 11 11 SER A 619 SER A 621 5 3 SHEET 1 A 2 VAL A 428 THR A 430 0 SHEET 2 A 2 GLY A 433 THR A 435 -1 O GLY A 433 N THR A 430 SHEET 1 B 3 TYR A 454 THR A 462 0 SHEET 2 B 3 VAL A 527 PRO A 534 -1 O VAL A 531 N GLY A 458 SHEET 3 B 3 VAL A 593 PRO A 600 -1 O ILE A 595 N ARG A 530 SHEET 1 C 4 LEU A 492 VAL A 494 0 SHEET 2 C 4 ASP A 580 ILE A 584 -1 O THR A 582 N VAL A 494 SHEET 3 C 4 ALA A 569 PRO A 573 -1 N PHE A 570 O VAL A 583 SHEET 4 C 4 PHE A 541 ARG A 543 1 N TYR A 542 O ALA A 569 CISPEP 1 LEU A 563 PRO A 564 0 4.18 SITE 1 AC1 10 HOH A 135 HOH A 187 TYR A 459 HIS A 460 SITE 2 AC1 10 GLY A 461 ASN A 485 TYR A 493 ALA A 501 SITE 3 AC1 10 TYR A 504 GLU A 581 SITE 1 AC2 12 HOH A 124 HOH A 148 HOH A 163 HOH A 231 SITE 2 AC2 12 ALA A 448 LEU A 449 TYR A 454 GLU A 513 SITE 3 AC2 12 TYR A 514 ASN A 550 GLU A 553 VAL A 593 CRYST1 40.284 64.582 77.836 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024824 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015484 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012848 0.00000