PDB Short entry for 3KMP HEADER TRANSCRIPTION REGULATOR/DNA 11-NOV-09 3KMP TITLE CRYSTAL STRUCTURE OF SMAD1-MH1/DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SMAD1-MH1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 9-132; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-D(P*AP*TP*CP*AP*GP*TP*CP*TP*AP*GP*AP*CP*AP*TP*A)-3'; COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 5'-D(P*GP*TP*AP*TP*GP*TP*CP*TP*AP*GP*AP*CP*TP*GP*A)-3'; COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SMAD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETG60A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS PROTEIN-DNA COMPLEX, SMAD1, SBE DNA, MH1 DOMAIN, BETA HAIRPIN, KEYWDS 2 NUCLEUS, TRANSCRIPTION, TRANSCRIPTION REGULATION, TRANSCRIPTION KEYWDS 3 REGULATOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.BABURAJENDRAN,P.PALASINGAM,K.NARASIMHAN,R.JAUCH,P.R.KOLATKAR REVDAT 3 20-MAR-24 3KMP 1 REMARK LINK REVDAT 2 11-DEC-13 3KMP 1 JRNL VERSN REVDAT 1 23-FEB-10 3KMP 0 JRNL AUTH N.BABURAJENDRAN,P.PALASINGAM,K.NARASIMHAN,W.SUN,S.PRABHAKAR, JRNL AUTH 2 R.JAUCH,P.R.KOLATKAR JRNL TITL STRUCTURE OF SMAD1 MH1/DNA COMPLEX REVEALS DISTINCTIVE JRNL TITL 2 REARRANGEMENTS OF BMP AND TGF-BETA EFFECTORS. JRNL REF NUCLEIC ACIDS RES. V. 38 3477 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20147459 JRNL DOI 10.1093/NAR/GKQ046 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 683 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4140 - 4.6080 0.98 2676 131 0.1650 0.1860 REMARK 3 2 4.6080 - 3.6620 0.99 2609 121 0.1840 0.2070 REMARK 3 3 3.6620 - 3.2000 1.00 2542 156 0.2250 0.3060 REMARK 3 4 3.2000 - 2.9080 1.00 2576 137 0.2450 0.3080 REMARK 3 5 2.9080 - 2.7000 1.00 2537 138 0.2750 0.3930 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 46.25 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.72400 REMARK 3 B22 (A**2) : -4.53900 REMARK 3 B33 (A**2) : -3.18500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2781 REMARK 3 ANGLE : 1.355 3876 REMARK 3 CHIRALITY : 0.085 407 REMARK 3 PLANARITY : 0.006 388 REMARK 3 DIHEDRAL : 20.658 1103 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -6.1101 -9.4663 -4.7637 REMARK 3 T TENSOR REMARK 3 T11: 0.4539 T22: 0.3584 REMARK 3 T33: 0.2922 T12: 0.0023 REMARK 3 T13: 0.0628 T23: 0.0562 REMARK 3 L TENSOR REMARK 3 L11: 2.5468 L22: 2.5250 REMARK 3 L33: 0.2591 L12: -1.1374 REMARK 3 L13: -1.5780 L23: 0.2173 REMARK 3 S TENSOR REMARK 3 S11: -0.3086 S12: -0.1348 S13: -0.0606 REMARK 3 S21: 0.4948 S22: 0.1862 S23: 0.2606 REMARK 3 S31: 0.2390 S32: 0.0707 S33: 0.1309 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -16.8914 31.8765 -17.0281 REMARK 3 T TENSOR REMARK 3 T11: 0.3022 T22: 0.2753 REMARK 3 T33: 0.4423 T12: 0.0186 REMARK 3 T13: 0.0586 T23: -0.1059 REMARK 3 L TENSOR REMARK 3 L11: 2.6872 L22: 0.9739 REMARK 3 L33: 2.0188 L12: 1.2968 REMARK 3 L13: -0.9009 L23: -0.3162 REMARK 3 S TENSOR REMARK 3 S11: 0.0913 S12: -0.3027 S13: 0.4957 REMARK 3 S21: 0.0001 S22: -0.0526 S23: 0.4205 REMARK 3 S31: -0.0204 S32: 0.0639 S33: -0.0146 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -13.8705 13.6852 -7.7842 REMARK 3 T TENSOR REMARK 3 T11: 0.2774 T22: 0.3503 REMARK 3 T33: 0.2114 T12: -0.0031 REMARK 3 T13: 0.0866 T23: -0.0716 REMARK 3 L TENSOR REMARK 3 L11: 4.2400 L22: 4.2150 REMARK 3 L33: 1.3401 L12: 1.3346 REMARK 3 L13: 2.4246 L23: 1.4121 REMARK 3 S TENSOR REMARK 3 S11: -0.2174 S12: -0.3059 S13: -0.3056 REMARK 3 S21: -0.4081 S22: 0.3653 S23: -0.2543 REMARK 3 S31: -0.6785 S32: -0.2628 S33: -0.0615 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): -15.0649 8.5770 -8.7586 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.3736 REMARK 3 T33: 0.3029 T12: -0.0628 REMARK 3 T13: -0.0040 T23: 0.0597 REMARK 3 L TENSOR REMARK 3 L11: 2.1053 L22: 3.5094 REMARK 3 L33: 3.7851 L12: -0.3101 REMARK 3 L13: 1.5145 L23: 1.5923 REMARK 3 S TENSOR REMARK 3 S11: 0.1797 S12: -0.4447 S13: -0.5719 REMARK 3 S21: -0.0125 S22: 0.1555 S23: -0.4897 REMARK 3 S31: -0.4322 S32: -0.0561 S33: -0.4425 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A RESID 11:30 REMARK 3 SELECTION : CHAIN B AND RESID 11:30 REMARK 3 ATOM PAIRS NUMBER : 164 REMARK 3 RMSD : 0.049 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A RESID 32:109 REMARK 3 SELECTION : CHAIN B AND RESID 32:109 REMARK 3 ATOM PAIRS NUMBER : 630 REMARK 3 RMSD : 0.041 REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A RESID 111:131 REMARK 3 SELECTION : CHAIN B AND RESID 111:131 REMARK 3 ATOM PAIRS NUMBER : 181 REMARK 3 RMSD : 0.042 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KMP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056183. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13623 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM TARTRATE DIBASIC, 20% REMARK 280 PEG 3350, 10% GLYCEROL, 3% 2-PROPANOL (ADDITIVE), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.96900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.89000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.89000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.96900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE B 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT C 2 N3 - C4 - O4 ANGL. DEV. = 3.6 DEGREES REMARK 500 DA C 9 O4' - C1' - N9 ANGL. DEV. = -6.8 DEGREES REMARK 500 DC C 12 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 DA C 13 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DA C 13 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT C 14 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DT C 14 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 15 O4' - C4' - C3' ANGL. DEV. = -5.4 DEGREES REMARK 500 DA C 15 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DA C 15 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG D 2 O4' - C4' - C3' ANGL. DEV. = -3.4 DEGREES REMARK 500 DT D 3 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT D 3 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DT D 3 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DA D 4 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DT D 7 C5 - C4 - O4 ANGL. DEV. = -4.3 DEGREES REMARK 500 DC D 8 O4' - C1' - N1 ANGL. DEV. = -5.6 DEGREES REMARK 500 DT D 9 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DT D 14 C3' - C2' - C1' ANGL. DEV. = -6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 79 -5.96 72.62 REMARK 500 ARG A 93 -60.71 -140.02 REMARK 500 GLU A 131 -164.42 -100.47 REMARK 500 HIS B 79 -3.43 72.40 REMARK 500 ARG B 93 -62.02 -140.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 2 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 64 SG REMARK 620 2 CYS A 109 SG 105.2 REMARK 620 3 CYS A 121 SG 111.2 108.7 REMARK 620 4 HIS A 126 ND1 110.3 112.6 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 64 SG REMARK 620 2 CYS B 109 SG 106.4 REMARK 620 3 CYS B 121 SG 116.0 108.0 REMARK 620 4 HIS B 126 ND1 103.1 114.3 109.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 133 DBREF 3KMP A 9 132 UNP Q8CC31 Q8CC31_MOUSE 9 132 DBREF 3KMP B 9 132 UNP Q8CC31 Q8CC31_MOUSE 9 132 DBREF 3KMP C 1 15 PDB 3KMP 3KMP 1 15 DBREF 3KMP D 2 16 PDB 3KMP 3KMP 2 16 SEQRES 1 A 124 PHE THR SER PRO ALA VAL LYS ARG LEU LEU GLY TRP LYS SEQRES 2 A 124 GLN GLY ASP GLU GLU GLU LYS TRP ALA GLU LYS ALA VAL SEQRES 3 A 124 ASP ALA LEU VAL LYS LYS LEU LYS LYS LYS LYS GLY ALA SEQRES 4 A 124 MET GLU GLU LEU GLU LYS ALA LEU SER CYS PRO GLY GLN SEQRES 5 A 124 PRO SER ASN CYS VAL THR ILE PRO ARG SER LEU ASP GLY SEQRES 6 A 124 ARG LEU GLN VAL SER HIS ARG LYS GLY LEU PRO HIS VAL SEQRES 7 A 124 ILE TYR CYS ARG VAL TRP ARG TRP PRO ASP LEU GLN SER SEQRES 8 A 124 HIS HIS GLU LEU LYS PRO LEU GLU CYS CYS GLU PHE PRO SEQRES 9 A 124 PHE GLY SER LYS GLN LYS GLU VAL CYS ILE ASN PRO TYR SEQRES 10 A 124 HIS TYR LYS ARG VAL GLU SER SEQRES 1 B 124 PHE THR SER PRO ALA VAL LYS ARG LEU LEU GLY TRP LYS SEQRES 2 B 124 GLN GLY ASP GLU GLU GLU LYS TRP ALA GLU LYS ALA VAL SEQRES 3 B 124 ASP ALA LEU VAL LYS LYS LEU LYS LYS LYS LYS GLY ALA SEQRES 4 B 124 MET GLU GLU LEU GLU LYS ALA LEU SER CYS PRO GLY GLN SEQRES 5 B 124 PRO SER ASN CYS VAL THR ILE PRO ARG SER LEU ASP GLY SEQRES 6 B 124 ARG LEU GLN VAL SER HIS ARG LYS GLY LEU PRO HIS VAL SEQRES 7 B 124 ILE TYR CYS ARG VAL TRP ARG TRP PRO ASP LEU GLN SER SEQRES 8 B 124 HIS HIS GLU LEU LYS PRO LEU GLU CYS CYS GLU PHE PRO SEQRES 9 B 124 PHE GLY SER LYS GLN LYS GLU VAL CYS ILE ASN PRO TYR SEQRES 10 B 124 HIS TYR LYS ARG VAL GLU SER SEQRES 1 C 15 DA DT DC DA DG DT DC DT DA DG DA DC DA SEQRES 2 C 15 DT DA SEQRES 1 D 15 DG DT DA DT DG DT DC DT DA DG DA DC DT SEQRES 2 D 15 DG DA HET ZN A 2 1 HET GOL A 133 6 HET ZN B 1 1 HET GOL B 133 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN 2(ZN 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 9 HOH *9(H2 O) HELIX 1 1 SER A 11 TRP A 20 1 10 HELIX 2 2 ASP A 24 LYS A 42 1 19 HELIX 3 3 GLY A 46 CYS A 57 1 12 HELIX 4 4 LEU A 83 ARG A 93 1 11 HELIX 5 5 SER A 99 HIS A 101 5 3 HELIX 6 6 PRO A 112 LYS A 116 5 5 HELIX 7 7 ASN A 123 TYR A 125 5 3 HELIX 8 8 SER B 11 TRP B 20 1 10 HELIX 9 9 ASP B 24 LYS B 42 1 19 HELIX 10 10 GLY B 46 CYS B 57 1 12 HELIX 11 11 LEU B 83 ARG B 93 1 11 HELIX 12 12 SER B 99 HIS B 101 5 3 HELIX 13 13 PRO B 112 LYS B 116 5 5 HELIX 14 14 ASN B 123 TYR B 125 5 3 SHEET 1 A 2 THR A 66 PRO A 68 0 SHEET 2 A 2 GLU A 119 CYS A 121 -1 O VAL A 120 N ILE A 67 SHEET 1 B 2 LEU A 75 VAL A 77 0 SHEET 2 B 2 ARG A 80 GLY A 82 -1 O GLY A 82 N LEU A 75 SHEET 1 C 2 LEU A 103 PRO A 105 0 SHEET 2 C 2 TYR A 127 ARG A 129 -1 O LYS A 128 N LYS A 104 SHEET 1 D 2 THR B 66 PRO B 68 0 SHEET 2 D 2 GLU B 119 CYS B 121 -1 O VAL B 120 N ILE B 67 SHEET 1 E 2 LEU B 75 VAL B 77 0 SHEET 2 E 2 ARG B 80 GLY B 82 -1 O GLY B 82 N LEU B 75 SHEET 1 F 2 LEU B 103 PRO B 105 0 SHEET 2 F 2 TYR B 127 ARG B 129 -1 O LYS B 128 N LYS B 104 LINK ZN ZN A 2 SG CYS A 64 1555 1555 2.28 LINK ZN ZN A 2 SG CYS A 109 1555 1555 2.29 LINK ZN ZN A 2 SG CYS A 121 1555 1555 2.49 LINK ZN ZN A 2 ND1 HIS A 126 1555 1555 2.02 LINK ZN ZN B 1 SG CYS B 64 1555 1555 2.31 LINK ZN ZN B 1 SG CYS B 109 1555 1555 2.33 LINK ZN ZN B 1 SG CYS B 121 1555 1555 2.42 LINK ZN ZN B 1 ND1 HIS B 126 1555 1555 2.03 SITE 1 AC1 4 CYS A 64 CYS A 109 CYS A 121 HIS A 126 SITE 1 AC2 3 TRP A 29 SER A 78 HIS A 79 SITE 1 AC3 4 CYS B 64 CYS B 109 CYS B 121 HIS B 126 SITE 1 AC4 4 LYS B 32 SER B 78 HIS B 79 ARG B 80 CRYST1 73.938 77.490 83.780 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013525 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012905 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011936 0.00000