PDB Short entry for 3KSS HEADER METAL TRANSPORT 23-NOV-09 3KSS TITLE STRUCTURE AND MECHANISM OF THE HEAVY METAL TRANSPORTER CUSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATION EFFLUX SYSTEM PROTEIN CUSA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: CUSA, YBDE, B0575, JW0564; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSMEMBRANE HELIX, CELL INNER MEMBRANE, CELL MEMBRANE, COPPER KEYWDS 2 TRANSPORT, ION TRANSPORT, MEMBRANE, TRANSMEMBRANE, TRANSPORT, METAL KEYWDS 3 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR C.-C.SU REVDAT 5 21-FEB-24 3KSS 1 REMARK SEQADV REVDAT 4 01-NOV-17 3KSS 1 REMARK REVDAT 3 13-JUL-11 3KSS 1 VERSN REVDAT 2 13-OCT-10 3KSS 1 JRNL REVDAT 1 22-SEP-10 3KSS 0 JRNL AUTH F.LONG,C.C.SU,M.T.ZIMMERMANN,S.E.BOYKEN,K.R.RAJASHANKAR, JRNL AUTH 2 R.L.JERNIGAN,E.W.YU JRNL TITL CRYSTAL STRUCTURES OF THE CUSA EFFLUX PUMP SUGGEST JRNL TITL 2 METHIONINE-MEDIATED METAL TRANSPORT. JRNL REF NATURE V. 467 484 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20865003 JRNL DOI 10.1038/NATURE09395 REMARK 2 REMARK 2 RESOLUTION. 3.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 15855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.263 REMARK 3 R VALUE (WORKING SET) : 0.260 REMARK 3 FREE R VALUE : 0.325 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.2850 - 7.0100 0.97 2737 128 0.2590 0.3120 REMARK 3 2 7.0100 - 5.5710 0.98 2670 125 0.2580 0.3400 REMARK 3 3 5.5710 - 4.8690 0.95 2539 143 0.2230 0.3090 REMARK 3 4 4.8690 - 4.4250 0.94 2512 145 0.2100 0.2870 REMARK 3 5 4.4250 - 4.1080 0.89 2392 118 0.2440 0.3100 REMARK 3 6 4.1080 - 3.8800 0.83 2205 141 0.2860 0.3570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.26 REMARK 3 B_SOL : 147.6 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 193.7 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.00200 REMARK 3 B22 (A**2) : 6.00200 REMARK 3 B33 (A**2) : -12.00300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7960 REMARK 3 ANGLE : 0.995 10834 REMARK 3 CHIRALITY : 0.068 1288 REMARK 3 PLANARITY : 0.005 1362 REMARK 3 DIHEDRAL : 18.404 2877 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056402. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03332 REMARK 200 MONOCHROMATOR : CRYO-COOLED SI(111) DOUBLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15855 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.880 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG4000, 0.1M MES(6.5), 0.4M REMARK 280 (NH4)2SO4 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K, PH REMARK 280 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 90.18150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.06631 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 95.99333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 90.18150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 52.06631 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 95.99333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 90.18150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 52.06631 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 95.99333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 90.18150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 52.06631 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 95.99333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 90.18150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 52.06631 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 95.99333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 90.18150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 52.06631 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 95.99333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 104.13263 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 191.98667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 104.13263 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 191.98667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 104.13263 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 191.98667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 104.13263 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 191.98667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 104.13263 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 191.98667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 104.13263 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 191.98667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 128130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -140.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLU A 3 REMARK 465 TRP A 4 REMARK 465 HIS A 425 REMARK 465 PRO A 426 REMARK 465 ASP A 427 REMARK 465 ALA A 428 REMARK 465 THR A 429 REMARK 465 LEU A 430 REMARK 465 ASP A 431 REMARK 465 ASN A 432 REMARK 465 TRP A 504 REMARK 465 ILE A 505 REMARK 465 ARG A 506 REMARK 465 GLY A 507 REMARK 465 LYS A 508 REMARK 465 ILE A 509 REMARK 465 PRO A 510 REMARK 465 PRO A 511 REMARK 465 GLU A 512 REMARK 465 SER A 513 REMARK 465 SER A 514 REMARK 465 ASN A 515 REMARK 465 LEU A 1040 REMARK 465 HIS A 1041 REMARK 465 ARG A 1042 REMARK 465 HIS A 1043 REMARK 465 ARG A 1044 REMARK 465 VAL A 1045 REMARK 465 ARG A 1046 REMARK 465 LYS A 1047 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 LEU A 529 CD1 LEU A 530 1.10 REMARK 500 C VAL A 255 CD PRO A 256 1.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA A 233 C ALA A 233 O 0.216 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 235 N - CA - C ANGL. DEV. = -22.6 DEGREES REMARK 500 GLY A 254 N - CA - C ANGL. DEV. = 55.3 DEGREES REMARK 500 VAL A 255 C - N - CA ANGL. DEV. = 17.0 DEGREES REMARK 500 VAL A 255 N - CA - CB ANGL. DEV. = -28.6 DEGREES REMARK 500 PRO A 256 C - N - CD ANGL. DEV. = -54.5 DEGREES REMARK 500 PRO A 574 C - N - CD ANGL. DEV. = -18.9 DEGREES REMARK 500 GLU A 761 N - CA - C ANGL. DEV. = -17.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 62.82 -158.92 REMARK 500 THR A 28 -32.97 -37.41 REMARK 500 THR A 34 153.13 -47.64 REMARK 500 LEU A 39 111.92 65.70 REMARK 500 ASP A 44 174.80 81.15 REMARK 500 PRO A 54 -70.87 -43.24 REMARK 500 GLN A 56 -130.00 -174.87 REMARK 500 ALA A 57 148.92 -171.64 REMARK 500 GLU A 62 -65.14 -94.51 REMARK 500 ASN A 63 -35.25 -38.46 REMARK 500 VAL A 82 79.37 -110.83 REMARK 500 PHE A 88 106.73 -46.04 REMARK 500 ASP A 102 102.41 -42.12 REMARK 500 PRO A 122 -172.02 -55.84 REMARK 500 PRO A 131 -99.63 -73.01 REMARK 500 ASP A 132 -7.27 -174.17 REMARK 500 SER A 148 -164.00 170.41 REMARK 500 PHE A 163 -76.01 -140.97 REMARK 500 PRO A 172 -87.19 -32.10 REMARK 500 ASN A 214 73.62 -154.33 REMARK 500 SER A 220 -163.56 94.35 REMARK 500 ALA A 225 -123.78 57.30 REMARK 500 GLN A 238 11.19 -149.64 REMARK 500 ASN A 253 -3.15 77.18 REMARK 500 MET A 271 114.33 -21.52 REMARK 500 ASN A 279 -168.65 51.87 REMARK 500 GLU A 283 102.58 31.44 REMARK 500 ARG A 292 101.77 -56.34 REMARK 500 SER A 293 123.31 -3.39 REMARK 500 LYS A 295 110.74 171.06 REMARK 500 ASN A 296 95.29 -29.62 REMARK 500 ASP A 326 85.76 -150.32 REMARK 500 TRP A 358 67.85 36.56 REMARK 500 HIS A 359 127.63 71.49 REMARK 500 ARG A 361 7.92 -62.57 REMARK 500 LEU A 386 -76.15 -90.46 REMARK 500 ASN A 387 -151.03 176.30 REMARK 500 ALA A 388 20.44 -160.29 REMARK 500 ASN A 389 171.07 -47.90 REMARK 500 PRO A 448 -75.07 -30.10 REMARK 500 VAL A 557 10.08 55.20 REMARK 500 GLU A 560 169.14 89.20 REMARK 500 PHE A 561 -151.29 -129.57 REMARK 500 PRO A 563 -168.10 -72.53 REMARK 500 ILE A 565 160.68 77.28 REMARK 500 PRO A 578 -101.49 -9.20 REMARK 500 ALA A 603 -91.03 -85.32 REMARK 500 ALA A 612 92.23 -161.59 REMARK 500 GLU A 613 60.54 11.52 REMARK 500 PRO A 620 178.41 -58.86 REMARK 500 REMARK 500 THIS ENTRY HAS 79 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 254 VAL A 255 143.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU1 A 1048 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KSO RELATED DB: PDB DBREF 3KSS A 1 1047 UNP P38054 CUSA_ECOLI 1 1047 SEQADV 3KSS MET A -7 UNP P38054 EXPRESSION TAG SEQADV 3KSS GLY A -6 UNP P38054 EXPRESSION TAG SEQADV 3KSS HIS A -5 UNP P38054 EXPRESSION TAG SEQADV 3KSS HIS A -4 UNP P38054 EXPRESSION TAG SEQADV 3KSS HIS A -3 UNP P38054 EXPRESSION TAG SEQADV 3KSS HIS A -2 UNP P38054 EXPRESSION TAG SEQADV 3KSS HIS A -1 UNP P38054 EXPRESSION TAG SEQADV 3KSS HIS A 0 UNP P38054 EXPRESSION TAG SEQRES 1 A 1055 MET GLY HIS HIS HIS HIS HIS HIS MET ILE GLU TRP ILE SEQRES 2 A 1055 ILE ARG ARG SER VAL ALA ASN ARG PHE LEU VAL LEU MET SEQRES 3 A 1055 GLY ALA LEU PHE LEU SER ILE TRP GLY THR TRP THR ILE SEQRES 4 A 1055 ILE ASN THR PRO VAL ASP ALA LEU PRO ASP LEU SER ASP SEQRES 5 A 1055 VAL GLN VAL ILE ILE LYS THR SER TYR PRO GLY GLN ALA SEQRES 6 A 1055 PRO GLN ILE VAL GLU ASN GLN VAL THR TYR PRO LEU THR SEQRES 7 A 1055 THR THR MET LEU SER VAL PRO GLY ALA LYS THR VAL ARG SEQRES 8 A 1055 GLY PHE SER GLN PHE GLY ASP SER TYR VAL TYR VAL ILE SEQRES 9 A 1055 PHE GLU ASP GLY THR ASP PRO TYR TRP ALA ARG SER ARG SEQRES 10 A 1055 VAL LEU GLU TYR LEU ASN GLN VAL GLN GLY LYS LEU PRO SEQRES 11 A 1055 ALA GLY VAL SER ALA GLU LEU GLY PRO ASP ALA THR GLY SEQRES 12 A 1055 VAL GLY TRP ILE TYR GLU TYR ALA LEU VAL ASP ARG SER SEQRES 13 A 1055 GLY LYS HIS ASP LEU ALA ASP LEU ARG SER LEU GLN ASP SEQRES 14 A 1055 TRP PHE LEU LYS TYR GLU LEU LYS THR ILE PRO ASP VAL SEQRES 15 A 1055 ALA GLU VAL ALA SER VAL GLY GLY VAL VAL LYS GLU TYR SEQRES 16 A 1055 GLN VAL VAL ILE ASP PRO GLN ARG LEU ALA GLN TYR GLY SEQRES 17 A 1055 ILE SER LEU ALA GLU VAL LYS SER ALA LEU ASP ALA SER SEQRES 18 A 1055 ASN GLN GLU ALA GLY GLY SER SER ILE GLU LEU ALA GLU SEQRES 19 A 1055 ALA GLU TYR MET VAL ARG ALA SER GLY TYR LEU GLN THR SEQRES 20 A 1055 LEU ASP ASP PHE ASN HIS ILE VAL LEU LYS ALA SER GLU SEQRES 21 A 1055 ASN GLY VAL PRO VAL TYR LEU ARG ASP VAL ALA LYS VAL SEQRES 22 A 1055 GLN ILE GLY PRO GLU MET ARG ARG GLY ILE ALA GLU LEU SEQRES 23 A 1055 ASN GLY GLU GLY GLU VAL ALA GLY GLY VAL VAL ILE LEU SEQRES 24 A 1055 ARG SER GLY LYS ASN ALA ARG GLU VAL ILE ALA ALA VAL SEQRES 25 A 1055 LYS ASP LYS LEU GLU THR LEU LYS SER SER LEU PRO GLU SEQRES 26 A 1055 GLY VAL GLU ILE VAL THR THR TYR ASP ARG SER GLN LEU SEQRES 27 A 1055 ILE ASP ARG ALA ILE ASP ASN LEU SER GLY LYS LEU LEU SEQRES 28 A 1055 GLU GLU PHE ILE VAL VAL ALA VAL VAL CYS ALA LEU PHE SEQRES 29 A 1055 LEU TRP HIS VAL ARG SER ALA LEU VAL ALA ILE ILE SER SEQRES 30 A 1055 LEU PRO LEU GLY LEU CYS ILE ALA PHE ILE VAL MET HIS SEQRES 31 A 1055 PHE GLN GLY LEU ASN ALA ASN ILE MET SER LEU GLY GLY SEQRES 32 A 1055 ILE ALA ILE ALA VAL GLY ALA MET VAL ASP ALA ALA ILE SEQRES 33 A 1055 VAL MET ILE GLU ASN ALA HIS LYS ARG LEU GLU GLU TRP SEQRES 34 A 1055 GLN HIS GLN HIS PRO ASP ALA THR LEU ASP ASN LYS THR SEQRES 35 A 1055 ARG TRP GLN VAL ILE THR ASP ALA SER VAL GLU VAL GLY SEQRES 36 A 1055 PRO ALA LEU PHE ILE SER LEU LEU ILE ILE THR LEU SER SEQRES 37 A 1055 PHE ILE PRO ILE PHE THR LEU GLU GLY GLN GLU GLY ARG SEQRES 38 A 1055 LEU PHE GLY PRO LEU ALA PHE THR LYS THR TYR ALA MET SEQRES 39 A 1055 ALA GLY ALA ALA LEU LEU ALA ILE VAL VAL ILE PRO ILE SEQRES 40 A 1055 LEU MET GLY TYR TRP ILE ARG GLY LYS ILE PRO PRO GLU SEQRES 41 A 1055 SER SER ASN PRO LEU ASN ARG PHE LEU ILE ARG VAL TYR SEQRES 42 A 1055 HIS PRO LEU LEU LEU LYS VAL LEU HIS TRP PRO LYS THR SEQRES 43 A 1055 THR LEU LEU VAL ALA ALA LEU SER VAL LEU THR VAL LEU SEQRES 44 A 1055 TRP PRO LEU ASN LYS VAL GLY GLY GLU PHE LEU PRO GLN SEQRES 45 A 1055 ILE ASN GLU GLY ASP LEU LEU TYR MET PRO SER THR LEU SEQRES 46 A 1055 PRO GLY ILE SER ALA ALA GLU ALA ALA SER MET LEU GLN SEQRES 47 A 1055 LYS THR ASP LYS LEU ILE MET SER VAL PRO GLU VAL ALA SEQRES 48 A 1055 ARG VAL PHE GLY LYS THR GLY LYS ALA GLU THR ALA THR SEQRES 49 A 1055 ASP SER ALA PRO LEU GLU MET VAL GLU THR THR ILE GLN SEQRES 50 A 1055 LEU LYS PRO GLN GLU GLN TRP ARG PRO GLY MET THR MET SEQRES 51 A 1055 ASP LYS ILE ILE GLU GLU LEU ASP ASN THR VAL ARG LEU SEQRES 52 A 1055 PRO GLY LEU ALA ASN LEU TRP VAL PRO PRO ILE ARG ASN SEQRES 53 A 1055 ARG ILE ASP MET LEU SER THR GLY ILE LYS SER PRO ILE SEQRES 54 A 1055 GLY ILE LYS VAL SER GLY THR VAL LEU ALA ASP ILE ASP SEQRES 55 A 1055 ALA MET ALA GLU GLN ILE GLU GLU VAL ALA ARG THR VAL SEQRES 56 A 1055 PRO GLY VAL ALA SER ALA LEU ALA GLU ARG LEU GLU GLY SEQRES 57 A 1055 GLY ARG TYR ILE ASN VAL GLU ILE ASN ARG GLU LYS ALA SEQRES 58 A 1055 ALA ARG TYR GLY MET THR VAL ALA ASP VAL GLN LEU PHE SEQRES 59 A 1055 VAL THR SER ALA VAL GLY GLY ALA MET VAL GLY GLU THR SEQRES 60 A 1055 VAL GLU GLY ILE ALA ARG TYR PRO ILE ASN LEU ARG TYR SEQRES 61 A 1055 PRO GLN SER TRP ARG ASP SER PRO GLN ALA LEU ARG GLN SEQRES 62 A 1055 LEU PRO ILE LEU THR PRO MET LYS GLN GLN ILE THR LEU SEQRES 63 A 1055 ALA ASP VAL ALA ASP ILE LYS VAL SER THR GLY PRO SER SEQRES 64 A 1055 MET LEU LYS THR GLU ASN ALA ARG PRO THR SER TRP ILE SEQRES 65 A 1055 TYR ILE ASP ALA ARG ASP ARG ASP MET VAL SER VAL VAL SEQRES 66 A 1055 HIS ASP LEU GLN LYS ALA ILE ALA GLU LYS VAL GLN LEU SEQRES 67 A 1055 LYS PRO GLY THR SER VAL ALA PHE SER GLY GLN PHE GLU SEQRES 68 A 1055 LEU LEU GLU ARG ALA ASN HIS LYS LEU LYS LEU MET VAL SEQRES 69 A 1055 PRO MET THR LEU MET ILE ILE PHE VAL LEU LEU TYR LEU SEQRES 70 A 1055 ALA PHE ARG ARG VAL GLY GLU ALA LEU LEU ILE ILE SER SEQRES 71 A 1055 SER VAL PRO PHE ALA LEU VAL GLY GLY ILE TRP LEU LEU SEQRES 72 A 1055 TRP TRP MET GLY PHE HIS LEU SER VAL ALA THR GLY THR SEQRES 73 A 1055 GLY PHE ILE ALA LEU ALA GLY VAL ALA ALA GLU PHE GLY SEQRES 74 A 1055 VAL VAL MET LEU MET TYR LEU ARG HIS ALA ILE GLU ALA SEQRES 75 A 1055 VAL PRO SER LEU ASN ASN PRO GLN THR PHE SER GLU GLN SEQRES 76 A 1055 LYS LEU ASP GLU ALA LEU TYR HIS GLY ALA VAL LEU ARG SEQRES 77 A 1055 VAL ARG PRO LYS ALA MET THR VAL ALA VAL ILE ILE ALA SEQRES 78 A 1055 GLY LEU LEU PRO ILE LEU TRP GLY THR GLY ALA GLY SER SEQRES 79 A 1055 GLU VAL MET SER ARG ILE ALA ALA PRO MET ILE GLY GLY SEQRES 80 A 1055 MET ILE THR ALA PRO LEU LEU SER LEU PHE ILE ILE PRO SEQRES 81 A 1055 ALA ALA TYR LYS LEU MET TRP LEU HIS ARG HIS ARG VAL SEQRES 82 A 1055 ARG LYS HET CU1 A1048 1 HETNAM CU1 COPPER (I) ION FORMUL 2 CU1 CU 1+ HELIX 1 1 ILE A 6 VAL A 10 5 5 HELIX 2 2 ASN A 12 THR A 34 1 23 HELIX 3 3 VAL A 65 MET A 73 1 9 HELIX 4 4 LEU A 74 VAL A 76 5 3 HELIX 5 5 ASP A 102 ASN A 115 1 14 HELIX 6 6 ASP A 152 PHE A 163 1 12 HELIX 7 7 PHE A 163 THR A 170 1 8 HELIX 8 8 ASP A 192 GLY A 200 1 9 HELIX 9 9 SER A 202 ASP A 211 1 10 HELIX 10 10 THR A 239 HIS A 245 1 7 HELIX 11 11 TYR A 258 ASP A 261 5 4 HELIX 12 12 ASN A 296 LYS A 312 1 17 HELIX 13 13 ARG A 327 LEU A 357 1 31 HELIX 14 14 ARG A 361 GLN A 384 1 24 HELIX 15 15 ASN A 389 MET A 403 1 15 HELIX 16 16 MET A 403 HIS A 423 1 21 HELIX 17 17 LYS A 433 VAL A 446 1 14 HELIX 18 18 VAL A 446 SER A 460 1 15 HELIX 19 19 PHE A 461 LEU A 467 1 7 HELIX 20 20 GLY A 469 TYR A 503 1 35 HELIX 21 21 ASN A 518 TRP A 535 1 18 HELIX 22 22 TRP A 535 VAL A 557 1 23 HELIX 23 23 SER A 581 VAL A 599 1 19 HELIX 24 24 THR A 641 VAL A 653 1 13 HELIX 25 25 PRO A 664 MET A 672 1 9 HELIX 26 26 VAL A 689 VAL A 707 1 19 HELIX 27 27 ASN A 729 ARG A 735 1 7 HELIX 28 28 THR A 739 SER A 749 1 11 HELIX 29 29 PRO A 773 ASP A 778 5 6 HELIX 30 30 SER A 779 LEU A 786 1 8 HELIX 31 31 LEU A 798 VAL A 801 1 4 HELIX 32 32 SER A 835 GLU A 846 1 12 HELIX 33 33 GLN A 861 TYR A 888 1 28 HELIX 34 34 ARG A 893 VAL A 904 1 12 HELIX 35 35 PRO A 905 ALA A 907 5 3 HELIX 36 36 LEU A 908 MET A 918 1 11 HELIX 37 37 SER A 923 ALA A 954 1 32 HELIX 38 38 VAL A 955 ASN A 960 5 6 HELIX 39 39 GLN A 967 GLY A 1001 1 35 HELIX 40 40 VAL A 1008 ILE A 1031 1 24 HELIX 41 41 PRO A 1032 TRP A 1039 1 8 SHEET 1 A 5 ALA A 127 LEU A 129 0 SHEET 2 A 5 GLN A 46 SER A 52 -1 N LYS A 50 O GLU A 128 SHEET 3 A 5 ASP A 90 ILE A 96 -1 O SER A 91 N THR A 51 SHEET 4 A 5 THR A 81 GLN A 87 -1 N PHE A 85 O TYR A 92 SHEET 5 A 5 LEU A 813 GLU A 816 -1 O LEU A 813 N SER A 86 SHEET 1 B 4 VAL A 174 VAL A 180 0 SHEET 2 B 4 ALA A 285 LEU A 291 -1 O GLY A 286 N VAL A 180 SHEET 3 B 4 TRP A 138 VAL A 145 -1 N TYR A 140 O VAL A 289 SHEET 4 B 4 GLU A 320 ASP A 326 -1 O THR A 324 N GLU A 141 SHEET 1 C 4 ALA A 263 PRO A 269 0 SHEET 2 C 4 LYS A 185 ILE A 191 -1 N GLN A 188 O GLN A 266 SHEET 3 C 4 ALA A 764 ARG A 771 1 O ASN A 769 N TYR A 187 SHEET 4 C 4 MET A 755 GLU A 761 -1 N GLU A 761 O ALA A 764 SHEET 1 D 2 GLN A 215 GLU A 216 0 SHEET 2 D 2 SER A 234 GLY A 235 -1 O GLY A 235 N GLN A 215 SHEET 1 E 2 SER A 221 ILE A 222 0 SHEET 2 E 2 TYR A 229 MET A 230 -1 O TYR A 229 N ILE A 222 SHEET 1 F 2 ALA A 250 SER A 251 0 SHEET 2 F 2 VAL A 255 PRO A 256 -1 O VAL A 255 N SER A 251 SHEET 1 G 5 GLY A 274 LEU A 278 0 SHEET 2 G 5 VAL A 602 GLY A 610 -1 O GLY A 607 N GLU A 277 SHEET 3 G 5 VAL A 624 LEU A 630 -1 O GLN A 629 N ALA A 603 SHEET 4 G 5 ASP A 569 TYR A 572 -1 N LEU A 570 O ILE A 628 SHEET 5 G 5 TRP A 662 VAL A 663 -1 O VAL A 663 N LEU A 571 SHEET 1 H 3 THR A 821 ILE A 826 0 SHEET 2 H 3 ILE A 681 GLY A 687 -1 N ILE A 683 O ILE A 824 SHEET 3 H 3 THR A 854 GLY A 860 -1 O ALA A 857 N LYS A 684 SHEET 1 I 2 GLY A 721 ARG A 722 0 SHEET 2 I 2 THR A 808 GLY A 809 -1 O GLY A 809 N GLY A 721 SHEET 1 J 2 ASN A 725 ILE A 728 0 SHEET 2 J 2 ALA A 802 LYS A 805 -1 O ASP A 803 N GLU A 727 SHEET 1 K 2 PRO A 787 LEU A 789 0 SHEET 2 K 2 GLN A 795 THR A 797 -1 O ILE A 796 N ILE A 788 LINK SD MET A 672 CU CU1 A1048 1555 1555 2.61 CISPEP 1 GLN A 635 TRP A 636 0 -4.82 SITE 1 AC1 4 MET A 573 MET A 623 GLU A 625 MET A 672 CRYST1 180.363 180.363 287.980 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005544 0.003201 0.000000 0.00000 SCALE2 0.000000 0.006402 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003472 0.00000