PDB Short entry for 3LAT HEADER HYDROLASE 07-JAN-10 3LAT TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCUS PEPTIDOGLYCAN HYDROLASE AMIE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL AUTOLYSIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 303-515; COMPND 5 SYNONYM: PEPTIDOGLYCAN HYDROLASE AMIE, ATLE, N-ACETYLMURAMOYL-L- COMPND 6 ALANINE AMIDASE; COMPND 7 EC: 3.5.1.28; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS EPIDERMIDIS; SOURCE 3 ORGANISM_TAXID: 1282; SOURCE 4 STRAIN: O-47; SOURCE 5 GENE: ATLE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX 4T-3 KEYWDS AMIDASE, ATLE, AUTOLYSIN, PEPTIDOGLYCAN HYDROLASE, CELL WALL KEYWDS 2 BIOGENESIS/DEGRADATION, MULTIFUNCTIONAL ENZYME, SECRETED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ZOLL,T.STEHLE REVDAT 3 20-MAR-24 3LAT 1 REMARK LINK REVDAT 2 31-MAR-10 3LAT 1 JRNL REVDAT 1 23-MAR-10 3LAT 0 JRNL AUTH S.ZOLL,B.PATZOLD,M.SCHLAG,F.GOTZ,H.KALBACHER,T.STEHLE JRNL TITL STRUCTURAL BASIS OF CELL WALL CLEAVAGE BY A STAPHYLOCOCCAL JRNL TITL 2 AUTOLYSIN JRNL REF PLOS PATHOG. V. 6 00807 2010 JRNL REFN ISSN 1553-7366 JRNL PMID 20300605 JRNL DOI 10.1371/JOURNAL.PPAT.1000807 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 77827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4164 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5640 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.1910 REMARK 3 BIN FREE R VALUE SET COUNT : 310 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 526 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.517 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3543 ; 0.009 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4825 ; 1.071 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 430 ; 5.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;40.377 ;23.949 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 533 ;11.686 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ; 9.365 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 485 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2857 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1706 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2473 ; 0.306 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 427 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 15 ; 0.060 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 34 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 7 ; 0.081 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2132 ; 0.881 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3383 ; 1.437 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1629 ; 2.507 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1434 ; 3.481 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LAT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000057048. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82089 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : 0.33000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIR REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% BUTANEDIOL, 0.1M IMIDAZOLE, 0.15M REMARK 280 ZINC ACETATE, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.39150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.72650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.72650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 111.58725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.72650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.72650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.19575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.72650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.72650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 111.58725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.72650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.72650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.19575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.39150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 LYS A 5 REMARK 465 THR A 6 REMARK 465 VAL B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 GLN B 4 REMARK 465 LYS B 5 REMARK 465 THR B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 -156.35 -130.20 REMARK 500 TRP A 105 78.91 -109.82 REMARK 500 ALA A 107 23.90 -141.70 REMARK 500 ASP B 90 -156.85 -132.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 218 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE1 REMARK 620 2 GLU A 36 OE2 52.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 215 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 60 ND1 REMARK 620 2 HIS A 165 ND1 97.6 REMARK 620 3 ASP A 179 OD2 106.4 126.6 REMARK 620 4 HOH A 372 O 116.2 104.6 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 219 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 96 OE2 REMARK 620 2 GLU A 96 OE1 58.1 REMARK 620 3 HOH A 454 O 134.3 96.9 REMARK 620 4 HOH A 457 O 82.7 122.5 81.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 217 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 152 OD2 REMARK 620 2 HOH A 375 O 90.1 REMARK 620 3 HOH A 376 O 93.8 94.6 REMARK 620 4 HOH A 377 O 84.8 88.0 177.0 REMARK 620 5 HOH A 378 O 173.4 84.8 90.8 90.9 REMARK 620 6 HOH A 379 O 88.4 175.7 89.6 87.8 96.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 216 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 177 ND1 REMARK 620 2 HOH A 372 O 111.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 215 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 60 ND1 REMARK 620 2 HIS B 165 ND1 97.8 REMARK 620 3 ASP B 179 OD2 105.8 127.2 REMARK 620 4 HOH B 312 O 116.6 104.1 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 218 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 61 OD2 REMARK 620 2 HOH B 314 O 98.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 219 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 152 OD2 REMARK 620 2 HOH B 315 O 90.0 REMARK 620 3 HOH B 316 O 84.1 90.5 REMARK 620 4 HOH B 317 O 93.9 87.0 176.8 REMARK 620 5 HOH B 318 O 96.3 173.2 92.7 90.0 REMARK 620 6 HOH B 319 O 175.4 85.5 95.2 86.6 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 217 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 176 OD1 REMARK 620 2 IMD B 214 N1 108.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 216 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 177 ND1 REMARK 620 2 BU1 B 222 O5 102.0 REMARK 620 3 HOH B 312 O 111.7 98.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 A 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 221 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 B 222 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU1 B 223 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 224 DBREF 3LAT A 1 213 UNP O33635 ATL_STAEP 303 515 DBREF 3LAT B 1 213 UNP O33635 ATL_STAEP 303 515 SEQRES 1 A 213 VAL SER SER GLN LYS THR SER SER LEU PRO LYS TYR THR SEQRES 2 A 213 PRO LYS VAL ASN SER SER ILE ASN ASN TYR ILE ARG LYS SEQRES 3 A 213 LYS ASN MET LYS ALA PRO ARG ILE GLU GLU ASP TYR THR SEQRES 4 A 213 SER TYR PHE PRO LYS TYR GLY TYR ARG ASN GLY VAL GLY SEQRES 5 A 213 ARG PRO GLU GLY ILE VAL VAL HIS ASP THR ALA ASN ASP SEQRES 6 A 213 ASN SER THR ILE ASP GLY GLU ILE ALA PHE MET LYS ARG SEQRES 7 A 213 ASN TYR THR ASN ALA PHE VAL HIS ALA PHE VAL ASP GLY SEQRES 8 A 213 ASN ARG ILE ILE GLU THR ALA PRO THR ASP TYR LEU SER SEQRES 9 A 213 TRP GLY ALA GLY PRO TYR GLY ASN GLN ARG PHE ILE ASN SEQRES 10 A 213 VAL GLU ILE VAL HIS THR HIS ASP TYR ASP SER PHE ALA SEQRES 11 A 213 ARG SER MET ASN ASN TYR ALA ASP TYR ALA ALA THR GLN SEQRES 12 A 213 LEU GLN TYR TYR ASN LEU LYS PRO ASP SER ALA GLU ASN SEQRES 13 A 213 ASP GLY ARG GLY THR VAL TRP THR HIS ALA ALA ILE SER SEQRES 14 A 213 ASN PHE LEU GLY GLY THR ASP HIS ALA ASP PRO HIS GLN SEQRES 15 A 213 TYR LEU ARG SER HIS ASN TYR SER TYR ALA GLU LEU TYR SEQRES 16 A 213 ASP LEU ILE TYR GLU LYS TYR LEU ILE LYS THR LYS GLN SEQRES 17 A 213 VAL ALA PRO TRP GLY SEQRES 1 B 213 VAL SER SER GLN LYS THR SER SER LEU PRO LYS TYR THR SEQRES 2 B 213 PRO LYS VAL ASN SER SER ILE ASN ASN TYR ILE ARG LYS SEQRES 3 B 213 LYS ASN MET LYS ALA PRO ARG ILE GLU GLU ASP TYR THR SEQRES 4 B 213 SER TYR PHE PRO LYS TYR GLY TYR ARG ASN GLY VAL GLY SEQRES 5 B 213 ARG PRO GLU GLY ILE VAL VAL HIS ASP THR ALA ASN ASP SEQRES 6 B 213 ASN SER THR ILE ASP GLY GLU ILE ALA PHE MET LYS ARG SEQRES 7 B 213 ASN TYR THR ASN ALA PHE VAL HIS ALA PHE VAL ASP GLY SEQRES 8 B 213 ASN ARG ILE ILE GLU THR ALA PRO THR ASP TYR LEU SER SEQRES 9 B 213 TRP GLY ALA GLY PRO TYR GLY ASN GLN ARG PHE ILE ASN SEQRES 10 B 213 VAL GLU ILE VAL HIS THR HIS ASP TYR ASP SER PHE ALA SEQRES 11 B 213 ARG SER MET ASN ASN TYR ALA ASP TYR ALA ALA THR GLN SEQRES 12 B 213 LEU GLN TYR TYR ASN LEU LYS PRO ASP SER ALA GLU ASN SEQRES 13 B 213 ASP GLY ARG GLY THR VAL TRP THR HIS ALA ALA ILE SER SEQRES 14 B 213 ASN PHE LEU GLY GLY THR ASP HIS ALA ASP PRO HIS GLN SEQRES 15 B 213 TYR LEU ARG SER HIS ASN TYR SER TYR ALA GLU LEU TYR SEQRES 16 B 213 ASP LEU ILE TYR GLU LYS TYR LEU ILE LYS THR LYS GLN SEQRES 17 B 213 VAL ALA PRO TRP GLY HET IMD A 214 5 HET ZN A 215 1 HET ZN A 216 1 HET ZN A 217 1 HET ZN A 218 1 HET ZN A 219 1 HET ZN A 220 1 HET ZN A 221 1 HET BU1 A 222 6 HET IMD B 214 5 HET ZN B 215 1 HET ZN B 216 1 HET ZN B 217 1 HET ZN B 218 1 HET ZN B 219 1 HET ZN B 220 1 HET ZN B 221 1 HET BU1 B 222 6 HET BU1 B 223 6 HET CL B 224 1 HETNAM IMD IMIDAZOLE HETNAM ZN ZINC ION HETNAM BU1 1,4-BUTANEDIOL HETNAM CL CHLORIDE ION FORMUL 3 IMD 2(C3 H5 N2 1+) FORMUL 4 ZN 14(ZN 2+) FORMUL 11 BU1 3(C4 H10 O2) FORMUL 22 CL CL 1- FORMUL 23 HOH *526(H2 O) HELIX 1 1 SER A 18 LYS A 27 1 10 HELIX 2 2 THR A 68 ASN A 79 1 12 HELIX 3 3 ALA A 107 GLN A 113 1 7 HELIX 4 4 ASP A 125 TYR A 147 1 23 HELIX 5 5 HIS A 165 LEU A 172 1 8 HELIX 6 6 PRO A 180 HIS A 187 1 8 HELIX 7 7 SER A 190 THR A 206 1 17 HELIX 8 8 SER B 18 LYS B 27 1 10 HELIX 9 9 THR B 68 ASN B 79 1 12 HELIX 10 10 ALA B 107 GLN B 113 1 7 HELIX 11 11 ASP B 125 TYR B 147 1 23 HELIX 12 12 HIS B 165 LEU B 172 1 8 HELIX 13 13 PRO B 180 HIS B 187 1 8 HELIX 14 14 SER B 190 THR B 206 1 17 SHEET 1 A 6 ILE A 34 GLU A 36 0 SHEET 2 A 6 ILE A 94 GLU A 96 1 O GLU A 96 N GLU A 35 SHEET 3 A 6 ALA A 87 VAL A 89 -1 N PHE A 88 O ILE A 95 SHEET 4 A 6 PHE A 115 ILE A 120 1 O GLU A 119 N ALA A 87 SHEET 5 A 6 GLY A 56 ASP A 61 1 N VAL A 58 O ILE A 116 SHEET 6 A 6 VAL A 162 THR A 164 1 O TRP A 163 N ILE A 57 SHEET 1 B 6 ILE B 34 GLU B 36 0 SHEET 2 B 6 ILE B 94 GLU B 96 1 O GLU B 96 N GLU B 35 SHEET 3 B 6 ALA B 87 VAL B 89 -1 N PHE B 88 O ILE B 95 SHEET 4 B 6 PHE B 115 ILE B 120 1 O GLU B 119 N ALA B 87 SHEET 5 B 6 GLY B 56 ASP B 61 1 N VAL B 58 O ILE B 116 SHEET 6 B 6 VAL B 162 THR B 164 1 O TRP B 163 N ILE B 57 LINK OE1 GLU A 36 ZN ZN A 218 1555 1555 2.07 LINK OE2 GLU A 36 ZN ZN A 218 1555 1555 2.66 LINK ND1 HIS A 60 ZN ZN A 215 1555 1555 2.09 LINK OD2 ASP A 65 ZN ZN A 220 1555 1555 1.97 LINK OE2 GLU A 96 ZN ZN A 219 1555 1555 2.20 LINK OE1 GLU A 96 ZN ZN A 219 1555 1555 2.32 LINK ND1 HIS A 124 ZN ZN A 221 1555 1555 1.97 LINK OD2 ASP A 152 ZN ZN A 217 1555 1555 2.08 LINK ND1 HIS A 165 ZN ZN A 215 1555 1555 2.09 LINK ND1 HIS A 177 ZN ZN A 216 1555 1555 2.12 LINK OD2 ASP A 179 ZN ZN A 215 1555 1555 2.01 LINK ZN ZN A 215 O HOH A 372 1555 1555 2.02 LINK ZN ZN A 216 O HOH A 372 1555 1555 1.91 LINK ZN ZN A 217 O HOH A 375 1555 1555 2.10 LINK ZN ZN A 217 O HOH A 376 1555 1555 2.21 LINK ZN ZN A 217 O HOH A 377 1555 1555 2.05 LINK ZN ZN A 217 O HOH A 378 1555 1555 2.06 LINK ZN ZN A 217 O HOH A 379 1555 1555 2.06 LINK ZN ZN A 219 O HOH A 454 1555 1555 1.99 LINK ZN ZN A 219 O HOH A 457 1555 1555 2.09 LINK ND1 HIS B 60 ZN ZN B 215 1555 1555 2.08 LINK OD2 ASP B 61 ZN ZN B 218 1555 1555 1.96 LINK OD2 ASP B 65 ZN ZN B 220 1555 1555 2.08 LINK ND1 HIS B 124 ZN ZN B 221 1555 1555 2.00 LINK OD2 ASP B 152 ZN ZN B 219 1555 1555 2.14 LINK ND1 HIS B 165 ZN ZN B 215 1555 1555 2.09 LINK OD1 ASP B 176 ZN ZN B 217 1555 1555 1.95 LINK ND1 HIS B 177 ZN ZN B 216 1555 1555 2.10 LINK OD2 ASP B 179 ZN ZN B 215 1555 1555 2.02 LINK N1 IMD B 214 ZN ZN B 217 1555 1555 1.97 LINK ZN ZN B 215 O HOH B 312 1555 1555 2.00 LINK ZN ZN B 216 O5 BU1 B 222 1555 1555 2.13 LINK ZN ZN B 216 O HOH B 312 1555 1555 1.94 LINK ZN ZN B 218 O HOH B 314 1555 1555 2.05 LINK ZN ZN B 219 O HOH B 315 1555 1555 2.08 LINK ZN ZN B 219 O HOH B 316 1555 1555 2.19 LINK ZN ZN B 219 O HOH B 317 1555 1555 2.09 LINK ZN ZN B 219 O HOH B 318 1555 1555 1.98 LINK ZN ZN B 219 O HOH B 319 1555 1555 2.01 CISPEP 1 ASP A 179 PRO A 180 0 3.09 CISPEP 2 ASP B 179 PRO B 180 0 2.20 SITE 1 AC1 8 ASP A 176 ASP B 61 HIS B 177 ASP B 179 SITE 2 AC1 8 ZN B 216 ZN B 218 BU1 B 222 CL B 224 SITE 1 AC2 5 HIS A 60 HIS A 165 ASP A 179 ZN A 216 SITE 2 AC2 5 HOH A 372 SITE 1 AC3 6 HIS A 177 ASP A 179 ZN A 215 HOH A 372 SITE 2 AC3 6 IMD B 214 BU1 B 222 SITE 1 AC4 6 ASP A 152 HOH A 375 HOH A 376 HOH A 377 SITE 2 AC4 6 HOH A 378 HOH A 379 SITE 1 AC5 4 GLU A 36 GLU B 96 HOH B 274 HOH B 277 SITE 1 AC6 4 GLU A 96 HOH A 454 HOH A 457 GLU B 36 SITE 1 AC7 4 ASP A 65 HIS A 124 ZN A 221 HOH A 367 SITE 1 AC8 2 HIS A 124 ZN A 220 SITE 1 AC9 7 SER A 67 GLY A 71 GLU A 72 PHE A 75 SITE 2 AC9 7 HOH A 419 HOH A 438 ASN B 82 SITE 1 BC1 8 ASP A 61 HIS A 177 ASP A 179 ZN A 216 SITE 2 BC1 8 ASP B 176 ZN B 217 BU1 B 222 CL B 224 SITE 1 BC2 5 HIS B 60 HIS B 165 ASP B 179 ZN B 216 SITE 2 BC2 5 HOH B 312 SITE 1 BC3 6 IMD A 214 HIS B 177 ASP B 179 ZN B 215 SITE 2 BC3 6 BU1 B 222 HOH B 312 SITE 1 BC4 5 ASP A 61 THR A 62 HOH A 374 ASP B 176 SITE 2 BC4 5 IMD B 214 SITE 1 BC5 5 ASP A 176 IMD A 214 ASP B 61 THR B 62 SITE 2 BC5 5 HOH B 314 SITE 1 BC6 6 ASP B 152 HOH B 315 HOH B 316 HOH B 317 SITE 2 BC6 6 HOH B 318 HOH B 319 SITE 1 BC7 3 ASP B 65 HIS B 124 ZN B 221 SITE 1 BC8 2 HIS B 124 ZN B 220 SITE 1 BC9 9 ALA A 63 HIS A 177 IMD A 214 ZN A 216 SITE 2 BC9 9 ALA B 63 HIS B 177 IMD B 214 ZN B 216 SITE 3 BC9 9 HOH B 312 SITE 1 CC1 7 ASN A 82 HOH A 250 HOH A 343 SER B 67 SITE 2 CC1 7 GLU B 72 PHE B 75 HOH B 341 SITE 1 CC2 4 ALA A 178 IMD A 214 ALA B 178 IMD B 214 CRYST1 99.453 99.453 148.783 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006721 0.00000