PDB Short entry for 3LQ3 HEADER TRANSFERASE 08-FEB-10 3LQ3 TITLE CRYSTAL STRUCTURE OF HUMAN CHOLINE KINASE BETA IN COMPLEX WITH TITLE 2 PHOSPHORYLATED HEMICHOLINIUM-3 AND ADENOSINE NUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHOLINE/ETHANOLAMINE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHOLINE/ETHANOLAMINE KINASE BETA, CKEKB, CHOLINE KINASE COMPND 5 BETA, CKB, CK, CHOLINE KINASE-LIKE PROTEIN, ETHANOLAMINE KINASE, EK, COMPND 6 ETHANOLAMINE KINASE BETA, EKB; COMPND 7 EC: 2.7.1.32, 2.7.1.82; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CHKB, CHETK, CHKL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A-LIC KEYWDS NON-PROTEIN KINASE, CHOLINE KINASE, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, HEMICHOLINIUM-3, PHOSPHORYLATION, ATP-BINDING, KINASE, KEYWDS 3 NUCLEOTIDE-BINDING, PHOSPHOLIPID BIOSYNTHESIS, PHOSPHOPROTEIN, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.S.HONG,W.TEMPEL,W.M.RABEH,F.MACKENZIE,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 C.BOUNTRA,J.WEIGELT,A.BOCHKAREV,H.W.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 4 06-SEP-23 3LQ3 1 REMARK SEQADV LINK REVDAT 3 01-NOV-17 3LQ3 1 REMARK REVDAT 2 01-SEP-10 3LQ3 1 JRNL REVDAT 1 05-MAY-10 3LQ3 0 JRNL AUTH B.S.HONG,A.ALLALI-HASSANI,W.TEMPEL,P.J.FINERTY,F.MACKENZIE, JRNL AUTH 2 S.DIMOV,M.VEDADI,H.W.PARK JRNL TITL CRYSTAL STRUCTURES OF HUMAN CHOLINE KINASE ISOFORMS IN JRNL TITL 2 COMPLEX WITH HEMICHOLINIUM-3: SINGLE AMINO ACID NEAR THE JRNL TITL 3 ACTIVE SITE INFLUENCES INHIBITOR SENSITIVITY. JRNL REF J.BIOL.CHEM. V. 285 16330 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20299452 JRNL DOI 10.1074/JBC.M109.039024 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 73434 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.045 REMARK 3 FREE R VALUE TEST SET COUNT : 3705 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5124 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 285 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2753 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 92 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.06700 REMARK 3 B33 (A**2) : -0.05200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.064 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.095 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3057 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2098 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4191 ; 1.498 ; 2.001 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5067 ; 0.876 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 373 ; 5.465 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;32.055 ;23.557 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;11.820 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;15.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 430 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3377 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 658 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1756 ; 0.875 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 697 ; 0.245 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2846 ; 1.540 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1301 ; 2.226 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1328 ; 3.476 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY. REMARK 3 THE PROGRAM COOT, AS WELL AS THE PRODRG AND MOLPROBITY SERVERS REMARK 3 WERE ALSO USED DURING REFINEMENT. REMARK 4 REMARK 4 3LQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC Q315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73581 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.90100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: DIRECT PLACEMENT OF PROTEIN COORDINATES OF PDB REMARK 200 ENTRY 3FEG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, 30% PEG4000, REMARK 280 0.2M AMMONIUM SULFATE. PROTEIN BUFFER: 0.01M TRIS PH 8.0, 0.5M REMARK 280 SODIUM CHLORIDE, 0.005M MAGNESIUM CHLORIDE, 0.01M DTT. LIGANDS: REMARK 280 0.003M HEMICHOLINIUM-3, 0.005M ATP., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.08750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.60300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.08750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.60300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 68.89663 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 55.13422 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 VAL A 9 REMARK 465 PRO A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 VAL A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 CYS A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 LYS A 20 REMARK 465 ASP A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 GLN A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 CYS A 28 REMARK 465 PRO A 29 REMARK 465 ASP A 30 REMARK 465 THR A 31 REMARK 465 THR A 32 REMARK 465 PRO A 33 REMARK 465 LYS A 34 REMARK 465 ARG A 35 REMARK 465 ARG A 36 REMARK 465 ARG A 37 REMARK 465 ALA A 38 REMARK 465 SER A 39 REMARK 465 SER A 40 REMARK 465 LEU A 41 REMARK 465 SER A 75 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 LEU A 78 REMARK 465 SER A 79 REMARK 465 GLU A 255 REMARK 465 ASN A 256 REMARK 465 ALA A 257 REMARK 465 THR A 389 REMARK 465 SER A 390 REMARK 465 VAL A 391 REMARK 465 HIS A 392 REMARK 465 SER A 393 REMARK 465 SER A 394 REMARK 465 SER A 395 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 43 CD NE CZ NH1 NH2 REMARK 470 ARG A 48 NE CZ NH1 NH2 REMARK 470 GLN A 51 OE1 NE2 REMARK 470 ARG A 62 CZ NH1 NH2 REMARK 470 ILE A 109 CG1 CG2 CD1 REMARK 470 LEU A 110 CG CD1 CD2 REMARK 470 LYS A 154 NZ REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 LYS A 197 CE NZ REMARK 470 LYS A 219 CE NZ REMARK 470 LYS A 227 CD CE NZ REMARK 470 GLU A 291 CD OE1 OE2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 LYS A 297 CE NZ REMARK 470 ARG A 299 CZ NH1 NH2 REMARK 470 GLN A 328 OE1 NE2 REMARK 470 GLN A 331 CD OE1 NE2 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 333 CE NZ REMARK 470 GLU A 336 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 283 UNK UNX A 399 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 150 174.50 179.03 REMARK 500 PRO A 180 46.65 -84.37 REMARK 500 PRO A 185 47.15 -80.92 REMARK 500 ASP A 242 52.17 -154.30 REMARK 500 ASP A 264 84.23 70.88 REMARK 500 THR A 365 -83.87 -126.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 397 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 247 OD1 REMARK 620 2 ASP A 264 OD2 91.1 REMARK 620 3 ADP A 401 O2A 88.2 101.7 REMARK 620 4 ADP A 401 O2B 172.7 95.6 87.5 REMARK 620 5 HOH A 403 O 94.7 83.1 174.4 89.0 REMARK 620 6 HOH A 404 O 87.5 167.4 90.9 86.5 84.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HC7 A 396 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 397 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 402 DBREF 3LQ3 A 14 395 UNP Q9Y259 CHKB_HUMAN 14 395 SEQADV 3LQ3 MET A -5 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 GLY A -4 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 SER A -3 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 SER A -2 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 HIS A -1 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 HIS A 0 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 HIS A 1 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 HIS A 2 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 HIS A 3 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 HIS A 4 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 SER A 5 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 SER A 6 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 GLY A 7 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 LEU A 8 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 VAL A 9 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 PRO A 10 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 ARG A 11 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 GLY A 12 UNP Q9Y259 EXPRESSION TAG SEQADV 3LQ3 SER A 13 UNP Q9Y259 EXPRESSION TAG SEQRES 1 A 401 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 401 LEU VAL PRO ARG GLY SER VAL GLY GLY CYS LEU ALA LYS SEQRES 3 A 401 ASP GLY LEU GLN GLN SER LYS CYS PRO ASP THR THR PRO SEQRES 4 A 401 LYS ARG ARG ARG ALA SER SER LEU SER ARG ASP ALA GLU SEQRES 5 A 401 ARG ARG ALA TYR GLN TRP CYS ARG GLU TYR LEU GLY GLY SEQRES 6 A 401 ALA TRP ARG ARG VAL GLN PRO GLU GLU LEU ARG VAL TYR SEQRES 7 A 401 PRO VAL SER GLY GLY LEU SER ASN LEU LEU PHE ARG CYS SEQRES 8 A 401 SER LEU PRO ASP HIS LEU PRO SER VAL GLY GLU GLU PRO SEQRES 9 A 401 ARG GLU VAL LEU LEU ARG LEU TYR GLY ALA ILE LEU GLN SEQRES 10 A 401 GLY VAL ASP SER LEU VAL LEU GLU SER VAL MET PHE ALA SEQRES 11 A 401 ILE LEU ALA GLU ARG SER LEU GLY PRO GLN LEU TYR GLY SEQRES 12 A 401 VAL PHE PRO GLU GLY ARG LEU GLU GLN TYR ILE PRO SER SEQRES 13 A 401 ARG PRO LEU LYS THR GLN GLU LEU ARG GLU PRO VAL LEU SEQRES 14 A 401 SER ALA ALA ILE ALA THR LYS MET ALA GLN PHE HIS GLY SEQRES 15 A 401 MET GLU MET PRO PHE THR LYS GLU PRO HIS TRP LEU PHE SEQRES 16 A 401 GLY THR MET GLU ARG TYR LEU LYS GLN ILE GLN ASP LEU SEQRES 17 A 401 PRO PRO THR GLY LEU PRO GLU MET ASN LEU LEU GLU MET SEQRES 18 A 401 TYR SER LEU LYS ASP GLU MET GLY ASN LEU ARG LYS LEU SEQRES 19 A 401 LEU GLU SER THR PRO SER PRO VAL VAL PHE CYS HIS ASN SEQRES 20 A 401 ASP ILE GLN GLU GLY ASN ILE LEU LEU LEU SER GLU PRO SEQRES 21 A 401 GLU ASN ALA ASP SER LEU MET LEU VAL ASP PHE GLU TYR SEQRES 22 A 401 SER SER TYR ASN TYR ARG GLY PHE ASP ILE GLY ASN HIS SEQRES 23 A 401 PHE CYS GLU TRP VAL TYR ASP TYR THR HIS GLU GLU TRP SEQRES 24 A 401 PRO PHE TYR LYS ALA ARG PRO THR ASP TYR PRO THR GLN SEQRES 25 A 401 GLU GLN GLN LEU HIS PHE ILE ARG HIS TYR LEU ALA GLU SEQRES 26 A 401 ALA LYS LYS GLY GLU THR LEU SER GLN GLU GLU GLN ARG SEQRES 27 A 401 LYS LEU GLU GLU ASP LEU LEU VAL GLU VAL SER ARG TYR SEQRES 28 A 401 ALA LEU ALA SER HIS PHE PHE TRP GLY LEU TRP SER ILE SEQRES 29 A 401 LEU GLN ALA SER MET SER THR ILE GLU PHE GLY TYR LEU SEQRES 30 A 401 ASP TYR ALA GLN SER ARG PHE GLN PHE TYR PHE GLN GLN SEQRES 31 A 401 LYS GLY GLN LEU THR SER VAL HIS SER SER SER HET HC7 A 396 34 HET MG A 397 1 HET UNX A 398 1 HET UNX A 399 1 HET SO4 A 400 5 HET ADP A 401 27 HET AMP A 402 23 HETNAM HC7 (2S)-2-[4'-({DIMETHYL[2-(PHOSPHONOOXY) HETNAM 2 HC7 ETHYL]AMMONIO}ACETYL)BIPHENYL-4-YL]-2-HYDROXY-4,4- HETNAM 3 HC7 DIMETHYLMORPHOLIN-4-IUM HETNAM MG MAGNESIUM ION HETNAM UNX UNKNOWN ATOM OR ION HETNAM SO4 SULFATE ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN HC7 2-{4-[4-(2-{DIMETHYL[2-(PHOSPHONATOOXY) HETSYN 2 HC7 ETHYL]AZANIUMYL}ACETYL)PHENYL]PHENYL}-2-HYDROXY-4,4- HETSYN 3 HC7 DIMETHYLMORPHOLIN-4-IUM FORMUL 2 HC7 C24 H35 N2 O7 P 2+ FORMUL 3 MG MG 2+ FORMUL 4 UNX 2(X) FORMUL 6 SO4 O4 S 2- FORMUL 7 ADP C10 H15 N5 O10 P2 FORMUL 8 AMP C10 H14 N5 O7 P FORMUL 9 HOH *273(H2 O) HELIX 1 1 SER A 42 GLY A 58 1 17 HELIX 2 2 GLY A 59 VAL A 64 5 6 HELIX 3 3 GLN A 65 LEU A 69 5 5 HELIX 4 4 GLY A 112 ARG A 129 1 18 HELIX 5 5 LYS A 154 ARG A 159 5 6 HELIX 6 6 GLU A 160 GLY A 176 1 17 HELIX 7 7 HIS A 186 ASP A 201 1 16 HELIX 8 8 ASN A 211 TYR A 216 1 6 HELIX 9 9 SER A 217 SER A 231 1 15 HELIX 10 10 GLN A 244 GLY A 246 5 3 HELIX 11 11 ARG A 273 TRP A 284 1 12 HELIX 12 12 PRO A 300 TYR A 303 5 4 HELIX 13 13 THR A 305 LYS A 321 1 17 HELIX 14 14 SER A 327 SER A 362 1 36 HELIX 15 15 GLY A 369 GLN A 387 1 19 SHEET 1 A 5 TYR A 72 PRO A 73 0 SHEET 2 A 5 LEU A 82 SER A 86 -1 O ARG A 84 N TYR A 72 SHEET 3 A 5 GLU A 100 LEU A 105 -1 O LEU A 103 N PHE A 83 SHEET 4 A 5 GLY A 142 GLN A 146 -1 O ARG A 143 N ARG A 104 SHEET 5 A 5 LEU A 135 PHE A 139 -1 N TYR A 136 O LEU A 144 SHEET 1 B 3 SER A 150 PRO A 152 0 SHEET 2 B 3 ILE A 248 LEU A 251 -1 O LEU A 250 N ARG A 151 SHEET 3 B 3 LEU A 260 LEU A 262 -1 O MET A 261 N LEU A 249 SHEET 1 C 2 VAL A 236 CYS A 239 0 SHEET 2 C 2 SER A 269 TYR A 272 -1 O SER A 269 N CYS A 239 SHEET 1 D 2 TYR A 286 ASP A 287 0 SHEET 2 D 2 LYS A 297 ALA A 298 -1 O LYS A 297 N ASP A 287 LINK OD1 ASN A 247 MG MG A 397 1555 1555 2.16 LINK OD2 ASP A 264 MG MG A 397 1555 1555 2.42 LINK MG MG A 397 O2AAADP A 401 1555 1555 2.02 LINK MG MG A 397 O2BAADP A 401 1555 1555 2.07 LINK MG MG A 397 O HOH A 403 1555 1555 1.93 LINK MG MG A 397 O HOH A 404 1555 1555 2.10 CISPEP 1 TRP A 293 PRO A 294 0 11.78 SITE 1 AC1 17 ASP A 242 GLN A 244 ASP A 264 TYR A 267 SITE 2 AC1 17 GLU A 283 TYR A 288 PHE A 295 TRP A 353 SITE 3 AC1 17 TRP A 356 GLU A 367 PHE A 368 TYR A 373 SITE 4 AC1 17 HOH A 403 HOH A 459 HOH A 532 HOH A 599 SITE 5 AC1 17 HOH A 669 SITE 1 AC2 5 ASN A 247 ASP A 264 ADP A 401 HOH A 403 SITE 2 AC2 5 HOH A 404 SITE 1 AC3 3 HIS A 311 ARG A 314 HIS A 315 SITE 1 AC4 20 LEU A 82 LEU A 102 ARG A 104 PRO A 133 SITE 2 AC4 20 GLU A 145 GLN A 146 TYR A 147 ILE A 148 SITE 3 AC4 20 PRO A 152 GLY A 246 ASN A 247 ASP A 264 SITE 4 AC4 20 MG A 397 HOH A 403 HOH A 404 HOH A 459 SITE 5 AC4 20 HOH A 545 HOH A 669 HOH A 670 HOH A 671 SITE 1 AC5 14 VAL A 74 LEU A 82 LEU A 102 ARG A 104 SITE 2 AC5 14 PRO A 133 GLU A 145 GLN A 146 TYR A 147 SITE 3 AC5 14 ILE A 148 PRO A 152 GLY A 246 LEU A 249 SITE 4 AC5 14 HOH A 545 HOH A 671 CRYST1 98.175 73.206 62.426 90.00 117.97 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010186 0.000000 0.005408 0.00000 SCALE2 0.000000 0.013660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018137 0.00000