PDB Short entry for 3LX3 HEADER BIOSYNTHETIC PROTEIN 24-FEB-10 3LX3 TITLE PLASMODIUM VIVAX 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE (PTPS) IN COMPLEX TITLE 2 WITH XANTHOPTERIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6-PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.2.3.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_TAXID: 5855; SOURCE 4 GENE: PVX_114505; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BG1861 KEYWDS PTS, PTP SYNTHASE, PTPS, METAL-BINDING, TETRAHYDROBIOPTERIN KEYWDS 2 BIOSYNTHESIS, FOLATE BIOSYNTHESIS, STRUCTURAL GENOMICS, MEDICAL KEYWDS 3 STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA, MSGPP, BIOSYNTHETIC KEYWDS 4 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 3 06-SEP-23 3LX3 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3LX3 1 REMARK REVDAT 1 09-MAR-10 3LX3 0 JRNL AUTH E.T.LARSON,J.BOSCH,J.E.KIM,N.MUELLER,C.L.M.J.VERLINDE, JRNL AUTH 2 W.C.VAN VOORHIS,F.S.BUCKNER,E.FAN,W.G.J.HOL,E.A.MERRITT JRNL TITL STRUCTURAL ANALYSIS OF THE DUAL-FUNCTIONAL JRNL TITL 2 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE FROM MALARIA PARASITES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0106 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1835 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2346 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 133 REMARK 3 BIN FREE R VALUE : 0.2410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1330 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.95000 REMARK 3 B22 (A**2) : -0.95000 REMARK 3 B33 (A**2) : 1.42000 REMARK 3 B12 (A**2) : -0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.037 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.076 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1446 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 991 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1969 ; 1.676 ; 1.961 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2433 ; 0.939 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 178 ; 6.475 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 78 ;38.795 ;24.744 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 270 ;12.139 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.364 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 220 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1602 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 290 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 844 ; 1.783 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 333 ; 0.605 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1397 ; 2.871 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 602 ; 3.970 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 564 ; 6.269 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1263 4.2917 18.5150 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.0971 REMARK 3 T33: 0.0332 T12: -0.0087 REMARK 3 T13: 0.0516 T23: -0.0070 REMARK 3 L TENSOR REMARK 3 L11: 4.5891 L22: 2.4137 REMARK 3 L33: 6.6340 L12: -5.0645 REMARK 3 L13: -3.1832 L23: 2.5153 REMARK 3 S TENSOR REMARK 3 S11: -0.1632 S12: 0.0845 S13: 0.0980 REMARK 3 S21: -0.0086 S22: 0.0851 S23: 0.0321 REMARK 3 S31: 0.2262 S32: -0.1763 S33: 0.0781 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 44 REMARK 3 ORIGIN FOR THE GROUP (A): -12.7103 18.1711 30.4900 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.0938 REMARK 3 T33: 0.0930 T12: 0.0038 REMARK 3 T13: 0.0051 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 0.1450 L22: 0.4653 REMARK 3 L33: 1.7505 L12: -0.7137 REMARK 3 L13: 0.4444 L23: 0.2220 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: -0.0631 S13: -0.0542 REMARK 3 S21: -0.0652 S22: 0.0957 S23: 0.0585 REMARK 3 S31: 0.0994 S32: -0.0475 S33: -0.0824 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 45 A 49 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7279 10.3119 25.0406 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.1488 REMARK 3 T33: 0.0533 T12: 0.0231 REMARK 3 T13: 0.0021 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 6.1840 L22: 1.0645 REMARK 3 L33: 14.4316 L12: -3.3562 REMARK 3 L13: -8.9577 L23: 4.1094 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: -0.2305 S13: -0.2569 REMARK 3 S21: 0.0699 S22: -0.0172 S23: 0.0704 REMARK 3 S31: 0.0245 S32: 0.3824 S33: 0.0815 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 50 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9688 9.5028 18.5968 REMARK 3 T TENSOR REMARK 3 T11: 0.0807 T22: 0.1176 REMARK 3 T33: 0.0842 T12: 0.0277 REMARK 3 T13: 0.0455 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.8810 L22: 0.9826 REMARK 3 L33: 0.6083 L12: -0.9136 REMARK 3 L13: -0.2699 L23: -0.2028 REMARK 3 S TENSOR REMARK 3 S11: -0.0509 S12: 0.0657 S13: 0.2557 REMARK 3 S21: -0.0617 S22: -0.0670 S23: -0.0643 REMARK 3 S31: 0.0398 S32: 0.0524 S33: 0.1179 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4400 19.8211 28.6580 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.1109 REMARK 3 T33: 0.1351 T12: 0.0240 REMARK 3 T13: 0.0024 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 3.8351 L22: 9.6158 REMARK 3 L33: 2.1478 L12: -4.4261 REMARK 3 L13: -3.5218 L23: 2.1503 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: -0.2893 S13: 0.3848 REMARK 3 S21: 0.0768 S22: 0.1150 S23: -0.0915 REMARK 3 S31: 0.0564 S32: 0.3812 S33: -0.0177 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 76 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -9.0586 26.1254 27.1338 REMARK 3 T TENSOR REMARK 3 T11: 0.1123 T22: 0.0536 REMARK 3 T33: 0.1034 T12: 0.0114 REMARK 3 T13: 0.0195 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 1.2609 L22: 0.6374 REMARK 3 L33: 2.1773 L12: -0.4342 REMARK 3 L13: 0.5942 L23: -0.2601 REMARK 3 S TENSOR REMARK 3 S11: 0.0970 S12: -0.2101 S13: 0.3964 REMARK 3 S21: -0.1548 S22: -0.0761 S23: -0.1423 REMARK 3 S31: 0.0524 S32: -0.0918 S33: -0.0209 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 113 REMARK 3 ORIGIN FOR THE GROUP (A): -19.4341 33.2761 29.3735 REMARK 3 T TENSOR REMARK 3 T11: 0.1116 T22: 0.0983 REMARK 3 T33: 0.0602 T12: 0.0055 REMARK 3 T13: -0.0006 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.6275 L22: 2.3941 REMARK 3 L33: 1.7635 L12: 1.3109 REMARK 3 L13: 1.4407 L23: 1.2494 REMARK 3 S TENSOR REMARK 3 S11: -0.0078 S12: -0.0053 S13: 0.1663 REMARK 3 S21: -0.1168 S22: -0.0657 S23: 0.1430 REMARK 3 S31: -0.0984 S32: -0.1751 S33: 0.0735 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 114 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4866 23.0587 22.6086 REMARK 3 T TENSOR REMARK 3 T11: 0.1052 T22: 0.0782 REMARK 3 T33: 0.0706 T12: 0.0024 REMARK 3 T13: 0.0159 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 0.6590 L22: 1.1843 REMARK 3 L33: 0.6067 L12: -0.6531 REMARK 3 L13: -0.3577 L23: 0.4717 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: 0.0018 S13: 0.0906 REMARK 3 S21: -0.1124 S22: -0.0107 S23: -0.0625 REMARK 3 S31: -0.0541 S32: 0.0538 S33: -0.0824 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2669 18.2880 14.0372 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.0702 REMARK 3 T33: 0.1085 T12: 0.0323 REMARK 3 T13: 0.0517 T23: 0.0863 REMARK 3 L TENSOR REMARK 3 L11: 2.4655 L22: 2.0631 REMARK 3 L33: -1.0910 L12: 0.4655 REMARK 3 L13: -0.9625 L23: -1.2125 REMARK 3 S TENSOR REMARK 3 S11: 0.0638 S12: 0.1620 S13: 0.4613 REMARK 3 S21: -0.0976 S22: -0.0637 S23: -0.1183 REMARK 3 S31: 0.0891 S32: 0.0157 S33: -0.0002 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 172 REMARK 3 ORIGIN FOR THE GROUP (A): -2.1760 10.4026 19.6234 REMARK 3 T TENSOR REMARK 3 T11: 0.1159 T22: 0.1121 REMARK 3 T33: 0.0441 T12: 0.0042 REMARK 3 T13: -0.0002 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 2.5878 L22: 0.8896 REMARK 3 L33: 1.6741 L12: 0.5771 REMARK 3 L13: -1.9780 L23: -0.3149 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: 0.0813 S13: 0.1115 REMARK 3 S21: -0.0241 S22: 0.0330 S23: 0.1051 REMARK 3 S31: 0.1469 S32: 0.0371 S33: -0.0760 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 3LX3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000057838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35343 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2A0S, A CHAIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 UL 5 MG/ML PROTEIN (REFOLDED IN SGPP REMARK 280 BUFFER + 0.01 MM ZN2+) MIXED WITH 1 UL 0.1 M SODIUM ACETATE (PH REMARK 280 5.2), 24% PEG 3350, 10 MM MGCL2, 1 MM TCEP, 2 MM XANTHOPTERIN; REMARK 280 CRYOPROTECTED BY 3 SEC DIP IN 96 MM SODIUM ACETATE (PH 5.2), 24% REMARK 280 PEG 3350, 134 MM NACL, 20% GLYCEROL, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 65.67900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.91979 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 24.52567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 65.67900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.91979 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 24.52567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 65.67900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.91979 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 24.52567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 65.67900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.91979 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 24.52567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 65.67900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.91979 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 24.52567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 65.67900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.91979 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 24.52567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.83958 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 49.05133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 75.83958 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 49.05133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 75.83958 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 49.05133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 75.83958 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.05133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 75.83958 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 49.05133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 75.83958 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 49.05133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 73.57700 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 73.57700 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 73.57700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 222 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 HIS A 4 REMARK 465 PRO A 5 REMARK 465 VAL A 6 REMARK 465 GLU A 7 REMARK 465 PRO A 8 REMARK 465 ARG A 9 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 135 NH2 ARG A 170 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 79 39.93 70.36 REMARK 500 ASN A 96 -122.79 52.32 REMARK 500 SER A 124 49.85 -81.46 REMARK 500 ASP A 142 122.59 94.57 REMARK 500 SER A 150 9.54 80.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 28 NE2 REMARK 620 2 HIS A 40 NE2 90.1 REMARK 620 3 HIS A 42 NE2 100.8 95.8 REMARK 620 4 GLU A 160 OE2 87.3 173.6 90.4 REMARK 620 5 HOH A 256 O 90.1 97.1 163.0 77.0 REMARK 620 6 HOH A 257 O 169.4 95.1 87.9 86.5 80.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XTN A 211 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2A0S RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE (PTPS) REMARK 900 FROM PLASMODIUM VIVAX AT 2.2 A RESOLUTION REMARK 900 RELATED ID: 1Y13 RELATED DB: PDB REMARK 900 STRUCTURAL ANALYSIS OF PLASMODIUM FALCIPARUM 6-PYRUVOYL REMARK 900 TETRAHYDROPTERIN SYNTHASE (PTPS) REMARK 900 RELATED ID: PVIV004546AAA RELATED DB: TARGETDB REMARK 900 RELATED ID: 3LZE RELATED DB: PDB REMARK 900 E37C CATALYTIC RESIDUE MUTANT REMARK 900 RELATED ID: 3M0N RELATED DB: PDB REMARK 900 E37A CATALYTIC RESIDUE MUTANT DBREF 3LX3 A 1 172 UNP A5K2B2 A5K2B2_PLAVI 1 172 SEQADV 3LX3 MET A -7 UNP A5K2B2 EXPRESSION TAG SEQADV 3LX3 ALA A -6 UNP A5K2B2 EXPRESSION TAG SEQADV 3LX3 HIS A -5 UNP A5K2B2 EXPRESSION TAG SEQADV 3LX3 HIS A -4 UNP A5K2B2 EXPRESSION TAG SEQADV 3LX3 HIS A -3 UNP A5K2B2 EXPRESSION TAG SEQADV 3LX3 HIS A -2 UNP A5K2B2 EXPRESSION TAG SEQADV 3LX3 HIS A -1 UNP A5K2B2 EXPRESSION TAG SEQADV 3LX3 HIS A 0 UNP A5K2B2 EXPRESSION TAG SEQRES 1 A 180 MET ALA HIS HIS HIS HIS HIS HIS MET ASN PRO HIS PRO SEQRES 2 A 180 VAL GLU PRO ARG ASP GLN ILE ALA GLU LEU LEU VAL GLU SEQRES 3 A 180 SER PRO LEU PHE SER PHE ASN CYS ALA HIS PHE ILE ALA SEQRES 4 A 180 PHE LYS GLY PHE ARG GLU THR LEU HIS GLY HIS ASN TYR SEQRES 5 A 180 ASN VAL SER LEU ARG LEU ARG GLY ASN ILE GLN GLY ASP SEQRES 6 A 180 GLY TYR VAL ILE ASP PHE SER ILE LEU LYS GLU LYS VAL SEQRES 7 A 180 ARG LYS VAL CYS LYS GLN LEU ASP HIS HIS PHE ILE LEU SEQRES 8 A 180 PRO MET TYR SER ASP VAL LEU ASN ILE GLN GLU VAL ASN SEQRES 9 A 180 ASP ASN PHE LYS ILE THR CYS GLU ASP ASN SER GLU TYR SEQRES 10 A 180 SER PHE PRO LYS ARG ASP CYS VAL GLN ILE PRO ILE LYS SEQRES 11 A 180 HIS SER SER THR GLU GLU ILE GLY LEU TYR ILE LEU ASN SEQRES 12 A 180 GLN LEU ILE GLU GLU ILE ASP LEU PRO PHE LEU LYS THR SEQRES 13 A 180 ARG SER VAL ASN TYR MET GLU VAL THR VAL SER GLU SER SEQRES 14 A 180 PRO SER GLN LYS ALA THR VAL HIS ARG ASN ILE HET ZN A 201 1 HET XTN A 211 13 HETNAM ZN ZINC ION HETNAM XTN 2-AMINO-1,5-DIHYDROPTERIDINE-4,6-DIONE HETSYN XTN XANTHOPTERIN FORMUL 2 ZN ZN 2+ FORMUL 3 XTN C6 H5 N5 O2 FORMUL 4 HOH *167(H2 O) HELIX 1 1 ASP A 62 ASP A 78 1 17 HELIX 2 2 SER A 125 ASP A 142 1 18 HELIX 3 3 ASP A 142 ARG A 149 1 8 SHEET 1 A 4 ILE A 12 HIS A 28 0 SHEET 2 A 4 HIS A 40 ASN A 53 -1 O LEU A 48 N VAL A 17 SHEET 3 A 4 TYR A 153 SER A 161 -1 O GLU A 155 N ARG A 49 SHEET 4 A 4 GLN A 164 ASN A 171 -1 O ALA A 166 N VAL A 158 SHEET 1 B 2 ALA A 31 PHE A 32 0 SHEET 2 B 2 PHE A 35 ARG A 36 -1 O PHE A 35 N PHE A 32 SHEET 1 C 2 PHE A 81 PRO A 84 0 SHEET 2 C 2 CYS A 116 ILE A 119 1 O VAL A 117 N LEU A 83 SHEET 1 D 3 LEU A 90 VAL A 95 0 SHEET 2 D 3 ASN A 98 CYS A 103 -1 O LYS A 100 N GLN A 93 SHEET 3 D 3 GLU A 108 PRO A 112 -1 O PHE A 111 N PHE A 99 LINK NE2 HIS A 28 ZN ZN A 201 1555 1555 2.11 LINK NE2 HIS A 40 ZN ZN A 201 1555 1555 2.10 LINK NE2 HIS A 42 ZN ZN A 201 1555 1555 2.10 LINK OE2 GLU A 160 ZN ZN A 201 1555 1555 2.65 LINK ZN ZN A 201 O HOH A 256 1555 1555 2.05 LINK ZN ZN A 201 O HOH A 257 1555 1555 2.18 SITE 1 AC1 6 HIS A 28 HIS A 40 HIS A 42 GLU A 160 SITE 2 AC1 6 HOH A 256 HOH A 257 SITE 1 AC2 10 ILE A 30 TYR A 59 ILE A 61 ASP A 62 SITE 2 AC2 10 PHE A 63 SER A 125 THR A 126 GLU A 127 SITE 3 AC2 10 GLU A 160 HOH A 256 CRYST1 131.358 131.358 73.577 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007613 0.004395 0.000000 0.00000 SCALE2 0.000000 0.008790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013591 0.00000