PDB Short entry for 3LY5 HEADER HYDROLASE 26-FEB-10 3LY5 TITLE DDX18 DEAD-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP-DEPENDENT RNA HELICASE DDX18; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DEAD-DOMAIN, RESIDUES 149-387; COMPND 5 SYNONYM: DEAD BOX PROTEIN 18, MYC-REGULATED DEAD BOX PROTEIN, MRDB; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DDX18; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS ALPHA-BETA, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 2 ATP-BINDING, HELICASE, HYDROLASE, NUCLEOTIDE-BINDING, RNA-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.SCHUTZ,T.KARLBERG,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,A.JOHANSSON, AUTHOR 3 I.JOHANSSON,A.KALLAS,P.KRAULIS,T.KOTENYOVA,A.KOTZSCH,N.MARKOVA, AUTHOR 4 M.MOCHE,T.K.NIELSEN,P.NORDLUND,T.NYMAN,C.PERSSON,A.K.ROOS, AUTHOR 5 M.I.SIPONEN,L.SVENSSON,A.G.THORSELL,L.TRESAUGUES,S.VAN DEN BERG, AUTHOR 6 E.WAHLBERG,J.WEIGELT,M.WELIN,M.WISNIEWSKA,H.M.SCHULER,STRUCTURAL AUTHOR 7 GENOMICS CONSORTIUM (SGC) REVDAT 3 21-FEB-24 3LY5 1 REMARK SEQADV REVDAT 2 27-OCT-10 3LY5 1 JRNL REVDAT 1 12-MAY-10 3LY5 0 JRNL AUTH P.SCHUTZ,T.KARLBERG,S.VAN DEN BERG,R.COLLINS,L.LEHTIO, JRNL AUTH 2 M.HOGBOM,L.HOLMBERG-SCHIAVONE,W.TEMPEL,H.W.PARK, JRNL AUTH 3 M.HAMMARSTROM,M.MOCHE,A.G.THORSELL,H.SCHULER JRNL TITL COMPARATIVE STRUCTURAL ANALYSIS OF HUMAN DEAD-BOX RNA JRNL TITL 2 HELICASES. JRNL REF PLOS ONE V. 5 12791 2010 JRNL REFN ESSN 1932-6203 JRNL PMID 20941364 JRNL DOI 10.1371/JOURNAL.PONE.0012791 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.274 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 491 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 781 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3060 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.428 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.343 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.698 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3108 ; 0.007 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4207 ; 0.952 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 420 ; 4.973 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;33.384 ;24.771 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 509 ;15.668 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;14.679 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 511 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2272 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2095 ; 0.173 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3319 ; 0.320 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1013 ; 0.403 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 888 ; 0.701 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3LY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97890 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12190 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 76.847 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.21300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 6.6, 0.2 M SODIUM REMARK 280 THIOCYANATE, 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.84700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 153.69400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 HIS A 129 REMARK 465 HIS A 130 REMARK 465 HIS A 131 REMARK 465 HIS A 132 REMARK 465 SER A 133 REMARK 465 SER A 134 REMARK 465 GLY A 135 REMARK 465 VAL A 136 REMARK 465 ASP A 137 REMARK 465 LEU A 138 REMARK 465 GLY A 139 REMARK 465 THR A 140 REMARK 465 GLU A 141 REMARK 465 ASN A 142 REMARK 465 LEU A 143 REMARK 465 TYR A 144 REMARK 465 PHE A 145 REMARK 465 GLN A 146 REMARK 465 SER A 147 REMARK 465 MET A 148 REMARK 465 ASN A 149 REMARK 465 ASN A 150 REMARK 465 VAL A 151 REMARK 465 GLU A 152 REMARK 465 LYS A 153 REMARK 465 PRO A 154 REMARK 465 ASP A 155 REMARK 465 ASN A 156 REMARK 465 ASP A 157 REMARK 465 GLU A 158 REMARK 465 ASP A 159 REMARK 465 GLU A 160 REMARK 465 SER A 161 REMARK 465 GLU A 162 REMARK 465 VAL A 163 REMARK 465 PRO A 164 REMARK 465 SER A 165 REMARK 465 LEU A 166 REMARK 465 PRO A 167 REMARK 465 LEU A 168 REMARK 465 GLY A 169 REMARK 465 LEU A 170 REMARK 465 ALA A 180 REMARK 465 SER A 181 REMARK 465 LEU A 182 REMARK 465 CYS A 183 REMARK 465 ASN A 184 REMARK 465 GLY A 387 REMARK 465 MET B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 HIS B 129 REMARK 465 HIS B 130 REMARK 465 HIS B 131 REMARK 465 HIS B 132 REMARK 465 SER B 133 REMARK 465 SER B 134 REMARK 465 GLY B 135 REMARK 465 VAL B 136 REMARK 465 ASP B 137 REMARK 465 LEU B 138 REMARK 465 GLY B 139 REMARK 465 THR B 140 REMARK 465 GLU B 141 REMARK 465 ASN B 142 REMARK 465 LEU B 143 REMARK 465 TYR B 144 REMARK 465 PHE B 145 REMARK 465 GLN B 146 REMARK 465 SER B 147 REMARK 465 MET B 148 REMARK 465 ASN B 149 REMARK 465 ASN B 150 REMARK 465 VAL B 151 REMARK 465 GLU B 152 REMARK 465 LYS B 153 REMARK 465 PRO B 154 REMARK 465 ASP B 155 REMARK 465 ASN B 156 REMARK 465 ASP B 157 REMARK 465 GLU B 158 REMARK 465 ASP B 159 REMARK 465 GLU B 160 REMARK 465 SER B 161 REMARK 465 GLU B 162 REMARK 465 VAL B 163 REMARK 465 PRO B 164 REMARK 465 SER B 165 REMARK 465 LEU B 166 REMARK 465 PRO B 167 REMARK 465 LEU B 168 REMARK 465 ALA B 180 REMARK 465 SER B 181 REMARK 465 LEU B 182 REMARK 465 CYS B 183 REMARK 465 ASN B 184 REMARK 465 GLY B 387 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 175 CD OE1 OE2 REMARK 470 THR A 177 CG2 REMARK 470 PHE A 179 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 185 CG CD1 CD2 REMARK 470 ASN A 187 CG OD1 ND2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 ALA A 193 CB REMARK 470 ILE A 194 CG1 CG2 CD1 REMARK 470 THR A 200 OG1 CG2 REMARK 470 ARG A 211 CB CG CD NE CZ NH1 NH2 REMARK 470 LEU A 213 CG CD1 CD2 REMARK 470 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 470 ALA A 221 CB REMARK 470 ILE A 235 CD1 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 246 CE1 CZ REMARK 470 MET A 247 CE REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 LEU A 274 CG CD1 CD2 REMARK 470 VAL A 279 CB CG1 CG2 REMARK 470 ILE A 285 CG1 CG2 CD1 REMARK 470 MET A 286 CG SD CE REMARK 470 GLN A 296 CG CD OE1 NE2 REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 LEU A 298 CG CD1 CD2 REMARK 470 ASN A 318 OD1 ND2 REMARK 470 TYR A 324 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 ILE A 350 CD1 REMARK 470 LEU A 353 CD1 CD2 REMARK 470 THR A 356 CG2 REMARK 470 ARG A 357 CG CD NE CZ NH1 NH2 REMARK 470 THR A 366 OG1 CG2 REMARK 470 GLN A 367 CG CD OE1 NE2 REMARK 470 ARG A 369 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 370 CD CE NZ REMARK 470 GLU A 372 CD OE1 OE2 REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 TYR A 385 CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 175 CG CD OE1 OE2 REMARK 470 PHE B 179 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU B 185 CG CD1 CD2 REMARK 470 LYS B 192 CE NZ REMARK 470 ALA B 193 CB REMARK 470 ILE B 194 CD1 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 ARG B 211 CB CG CD NE CZ NH1 NH2 REMARK 470 LEU B 219 CG CD1 CD2 REMARK 470 ALA B 221 CB REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 ILE B 235 CD1 REMARK 470 ILE B 241 CG1 CG2 CD1 REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 ARG B 245 CD NE CZ NH1 NH2 REMARK 470 MET B 247 CG SD CE REMARK 470 ARG B 249 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 257 CG CD1 CD2 REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 VAL B 279 CB CG1 CG2 REMARK 470 GLN B 296 CG CD OE1 NE2 REMARK 470 LYS B 297 CG CD CE NZ REMARK 470 GLN B 317 CD OE1 NE2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 LYS B 348 CE NZ REMARK 470 GLN B 349 CG CD OE1 NE2 REMARK 470 ILE B 350 CD1 REMARK 470 LYS B 352 CE NZ REMARK 470 LEU B 353 CD1 CD2 REMARK 470 THR B 368 OG1 CG2 REMARK 470 ARG B 369 NE CZ NH1 NH2 REMARK 470 LYS B 370 CD CE NZ REMARK 470 ARG B 376 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 382 CG CD OE1 OE2 REMARK 470 TYR B 385 CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 290 72.46 49.00 REMARK 500 LYS A 380 -66.52 -107.75 REMARK 500 THR B 200 -37.77 -133.45 REMARK 500 ALA B 222 54.04 -112.41 REMARK 500 ASN B 290 107.29 -59.82 REMARK 500 GLN B 367 61.94 -117.05 REMARK 500 LYS B 380 -78.00 -123.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 389 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 223 O REMARK 620 2 GLU A 334 OE2 135.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 388 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 2 DBREF 3LY5 A 149 387 UNP Q9NVP1 DDX18_HUMAN 149 387 DBREF 3LY5 B 149 387 UNP Q9NVP1 DDX18_HUMAN 149 387 SEQADV 3LY5 MET A 126 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS A 127 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS A 128 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS A 129 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS A 130 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS A 131 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS A 132 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 SER A 133 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 SER A 134 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 GLY A 135 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 VAL A 136 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 ASP A 137 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 LEU A 138 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 GLY A 139 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 THR A 140 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 GLU A 141 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 ASN A 142 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 LEU A 143 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 TYR A 144 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 PHE A 145 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 GLN A 146 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 SER A 147 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 MET A 148 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 MET B 126 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS B 127 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS B 128 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS B 129 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS B 130 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS B 131 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 HIS B 132 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 SER B 133 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 SER B 134 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 GLY B 135 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 VAL B 136 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 ASP B 137 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 LEU B 138 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 GLY B 139 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 THR B 140 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 GLU B 141 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 ASN B 142 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 LEU B 143 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 TYR B 144 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 PHE B 145 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 GLN B 146 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 SER B 147 UNP Q9NVP1 EXPRESSION TAG SEQADV 3LY5 MET B 148 UNP Q9NVP1 EXPRESSION TAG SEQRES 1 A 262 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 262 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN ASN VAL SEQRES 3 A 262 GLU LYS PRO ASP ASN ASP GLU ASP GLU SER GLU VAL PRO SEQRES 4 A 262 SER LEU PRO LEU GLY LEU THR GLY ALA PHE GLU ASP THR SEQRES 5 A 262 SER PHE ALA SER LEU CYS ASN LEU VAL ASN GLU ASN THR SEQRES 6 A 262 LEU LYS ALA ILE LYS GLU MET GLY PHE THR ASN MET THR SEQRES 7 A 262 GLU ILE GLN HIS LYS SER ILE ARG PRO LEU LEU GLU GLY SEQRES 8 A 262 ARG ASP LEU LEU ALA ALA ALA LYS THR GLY SER GLY LYS SEQRES 9 A 262 THR LEU ALA PHE LEU ILE PRO ALA VAL GLU LEU ILE VAL SEQRES 10 A 262 LYS LEU ARG PHE MET PRO ARG ASN GLY THR GLY VAL LEU SEQRES 11 A 262 ILE LEU SER PRO THR ARG GLU LEU ALA MET GLN THR PHE SEQRES 12 A 262 GLY VAL LEU LYS GLU LEU MET THR HIS HIS VAL HIS THR SEQRES 13 A 262 TYR GLY LEU ILE MET GLY GLY SER ASN ARG SER ALA GLU SEQRES 14 A 262 ALA GLN LYS LEU GLY ASN GLY ILE ASN ILE ILE VAL ALA SEQRES 15 A 262 THR PRO GLY ARG LEU LEU ASP HIS MET GLN ASN THR PRO SEQRES 16 A 262 GLY PHE MET TYR LYS ASN LEU GLN CYS LEU VAL ILE ASP SEQRES 17 A 262 GLU ALA ASP ARG ILE LEU ASP VAL GLY PHE GLU GLU GLU SEQRES 18 A 262 LEU LYS GLN ILE ILE LYS LEU LEU PRO THR ARG ARG GLN SEQRES 19 A 262 THR MET LEU PHE SER ALA THR GLN THR ARG LYS VAL GLU SEQRES 20 A 262 ASP LEU ALA ARG ILE SER LEU LYS LYS GLU PRO LEU TYR SEQRES 21 A 262 VAL GLY SEQRES 1 B 262 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 262 GLY THR GLU ASN LEU TYR PHE GLN SER MET ASN ASN VAL SEQRES 3 B 262 GLU LYS PRO ASP ASN ASP GLU ASP GLU SER GLU VAL PRO SEQRES 4 B 262 SER LEU PRO LEU GLY LEU THR GLY ALA PHE GLU ASP THR SEQRES 5 B 262 SER PHE ALA SER LEU CYS ASN LEU VAL ASN GLU ASN THR SEQRES 6 B 262 LEU LYS ALA ILE LYS GLU MET GLY PHE THR ASN MET THR SEQRES 7 B 262 GLU ILE GLN HIS LYS SER ILE ARG PRO LEU LEU GLU GLY SEQRES 8 B 262 ARG ASP LEU LEU ALA ALA ALA LYS THR GLY SER GLY LYS SEQRES 9 B 262 THR LEU ALA PHE LEU ILE PRO ALA VAL GLU LEU ILE VAL SEQRES 10 B 262 LYS LEU ARG PHE MET PRO ARG ASN GLY THR GLY VAL LEU SEQRES 11 B 262 ILE LEU SER PRO THR ARG GLU LEU ALA MET GLN THR PHE SEQRES 12 B 262 GLY VAL LEU LYS GLU LEU MET THR HIS HIS VAL HIS THR SEQRES 13 B 262 TYR GLY LEU ILE MET GLY GLY SER ASN ARG SER ALA GLU SEQRES 14 B 262 ALA GLN LYS LEU GLY ASN GLY ILE ASN ILE ILE VAL ALA SEQRES 15 B 262 THR PRO GLY ARG LEU LEU ASP HIS MET GLN ASN THR PRO SEQRES 16 B 262 GLY PHE MET TYR LYS ASN LEU GLN CYS LEU VAL ILE ASP SEQRES 17 B 262 GLU ALA ASP ARG ILE LEU ASP VAL GLY PHE GLU GLU GLU SEQRES 18 B 262 LEU LYS GLN ILE ILE LYS LEU LEU PRO THR ARG ARG GLN SEQRES 19 B 262 THR MET LEU PHE SER ALA THR GLN THR ARG LYS VAL GLU SEQRES 20 B 262 ASP LEU ALA ARG ILE SER LEU LYS LYS GLU PRO LEU TYR SEQRES 21 B 262 VAL GLY HET PO4 A 1 5 HET MG A 388 1 HET MG A 389 1 HET SCN A 390 3 HET SCN B 2 3 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM SCN THIOCYANATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 MG 2(MG 2+) FORMUL 6 SCN 2(C N S 1-) FORMUL 8 HOH *45(H2 O) HELIX 1 1 PHE A 174 SER A 178 5 5 HELIX 2 2 ASN A 187 MET A 197 1 11 HELIX 3 3 THR A 203 GLY A 216 1 14 HELIX 4 4 GLY A 228 LEU A 244 1 17 HELIX 5 5 MET A 247 GLY A 251 5 5 HELIX 6 6 THR A 260 MET A 275 1 16 HELIX 7 7 ASN A 290 GLY A 301 1 12 HELIX 8 8 THR A 308 THR A 319 1 12 HELIX 9 9 GLU A 334 VAL A 341 1 8 HELIX 10 10 PHE A 343 LEU A 354 1 12 HELIX 11 11 THR A 368 LEU A 379 1 12 HELIX 12 12 PHE B 174 SER B 178 5 5 HELIX 13 13 ASN B 187 GLU B 196 1 10 HELIX 14 14 THR B 203 GLY B 216 1 14 HELIX 15 15 GLY B 228 LEU B 244 1 17 HELIX 16 16 THR B 260 MET B 275 1 16 HELIX 17 17 ASN B 290 ASN B 300 1 11 HELIX 18 18 THR B 308 THR B 319 1 12 HELIX 19 19 GLU B 334 VAL B 341 1 8 HELIX 20 20 PHE B 343 LEU B 354 1 12 HELIX 21 21 THR B 368 LEU B 379 1 12 SHEET 1 A 7 TYR A 282 ILE A 285 0 SHEET 2 A 7 ILE A 304 ALA A 307 1 O VAL A 306 N GLY A 283 SHEET 3 A 7 VAL A 254 LEU A 257 1 N ILE A 256 O ALA A 307 SHEET 4 A 7 CYS A 329 ILE A 332 1 O VAL A 331 N LEU A 257 SHEET 5 A 7 GLN A 359 PHE A 363 1 O MET A 361 N LEU A 330 SHEET 6 A 7 LEU A 220 ALA A 221 1 N ALA A 221 O LEU A 362 SHEET 7 A 7 LEU A 384 TYR A 385 1 O TYR A 385 N LEU A 220 SHEET 1 B 7 TYR B 282 ILE B 285 0 SHEET 2 B 7 ILE B 304 ALA B 307 1 O VAL B 306 N ILE B 285 SHEET 3 B 7 VAL B 254 LEU B 257 1 N ILE B 256 O ALA B 307 SHEET 4 B 7 CYS B 329 ILE B 332 1 O VAL B 331 N LEU B 255 SHEET 5 B 7 GLN B 359 PHE B 363 1 O PHE B 363 N ILE B 332 SHEET 6 B 7 LEU B 220 ALA B 221 1 N ALA B 221 O LEU B 362 SHEET 7 B 7 LEU B 384 TYR B 385 1 O TYR B 385 N LEU B 220 LINK O ALA A 223 MG MG A 389 1555 1555 2.36 LINK OE2 GLU A 334 MG MG A 389 1555 1555 2.70 LINK OE2 GLU A 346 MG MG A 388 1555 1555 2.81 SITE 1 AC1 6 THR A 225 GLY A 226 SER A 227 GLY A 228 SITE 2 AC1 6 LYS A 229 THR A 230 SITE 1 AC2 2 GLY A 342 GLU A 346 SITE 1 AC3 5 ALA A 223 LYS A 229 GLU A 334 SER A 364 SITE 2 AC3 5 ALA A 365 SITE 1 AC4 3 THR A 308 GLY A 310 ARG A 311 SITE 1 AC5 3 THR B 308 GLY B 310 ARG B 311 CRYST1 41.340 41.340 230.541 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024190 0.013966 0.000000 0.00000 SCALE2 0.000000 0.027932 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004338 0.00000