PDB Short entry for 3LZW HEADER OXIDOREDUCTASE 02-MAR-10 3LZW TITLE CRYSTAL STRUCTURE OF FERREDOXIN-NADP+ OXIDOREDUCTASE FROM BACILLUS TITLE 2 SUBTILIS (FORM I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERREDOXIN--NADP REDUCTASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERREDOXIN-NADP+ OXIDOREDUCTASE, FD-NADP+ REDUCTASE 2, FNR COMPND 5 2; COMPND 6 EC: 1.18.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PETBLUE-1 KEYWDS FERREDOXIN REDUCTASE, FAD, NADPH, FLAVOPROTEIN, NADP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.KOMORI,D.SEO,T.SAKURAI,Y.HIGUCHI REVDAT 2 01-NOV-23 3LZW 1 REMARK LINK REVDAT 1 08-DEC-10 3LZW 0 JRNL AUTH H.KOMORI,D.SEO,T.SAKURAI,Y.HIGUCHI JRNL TITL CRYSTAL STRUCTURE ANALYSIS OF BACILLUS SUBTILIS JRNL TITL 2 FERREDOXIN-NADP(+) OXIDOREDUCTASE AND THE STRUCTURAL BASIS JRNL TITL 3 FOR ITS SUBSTRATE SELECTIVITY JRNL REF PROTEIN SCI. V. 19 2279 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20878669 JRNL DOI 10.1002/PRO.508 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 30707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1602 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2203 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2060 REMARK 3 BIN FREE R VALUE SET COUNT : 102 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2570 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 103 REMARK 3 SOLVENT ATOMS : 240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.875 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2728 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1814 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3706 ; 1.253 ; 2.016 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4397 ; 0.799 ; 3.004 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.300 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;36.807 ;25.250 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 468 ;12.417 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 8.977 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 416 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2975 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 508 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 457 ; 0.195 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1903 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1284 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1378 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 199 ; 0.137 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.107 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.117 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 71 ; 0.231 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.131 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1629 ; 0.422 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 672 ; 0.091 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2623 ; 0.796 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1136 ; 1.237 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1083 ; 1.976 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 125 REMARK 3 RESIDUE RANGE : A 250 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6999 -5.3562 10.7321 REMARK 3 T TENSOR REMARK 3 T11: -0.0389 T22: -0.0278 REMARK 3 T33: -0.0300 T12: -0.0079 REMARK 3 T13: 0.0080 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.8069 L22: 0.6072 REMARK 3 L33: 0.7368 L12: 0.2189 REMARK 3 L13: 0.2946 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0061 S13: 0.0277 REMARK 3 S21: 0.0241 S22: 0.0170 S23: 0.0542 REMARK 3 S31: 0.0280 S32: -0.0858 S33: -0.0109 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 249 REMARK 3 ORIGIN FOR THE GROUP (A): -14.4038 -34.5928 28.3066 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: -0.1633 REMARK 3 T33: -0.0898 T12: -0.0633 REMARK 3 T13: -0.0036 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 3.9590 L22: 4.2882 REMARK 3 L33: 3.2639 L12: 0.8593 REMARK 3 L13: -0.6418 L23: -1.6702 REMARK 3 S TENSOR REMARK 3 S11: -0.2346 S12: -0.0545 S13: -0.2018 REMARK 3 S21: -0.5710 S22: 0.1581 S23: 0.0497 REMARK 3 S31: 0.8102 S32: -0.1277 S33: 0.0764 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3LZW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057931. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED EXIT SI 111 DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32363 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 26.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZBW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES BUFFER (PH 7.5), 30% 1,2 REMARK 280 -PROPANEDIOL, 20% PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.95000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.86200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.86200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 526 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 528 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 566 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 330 REMARK 465 ASN A 331 REMARK 465 LYS A 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 50 47.98 -150.71 REMARK 500 LYS A 140 -92.46 -118.55 REMARK 500 ASP A 219 -58.77 -120.19 REMARK 500 ASN A 245 67.10 -118.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A3001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 266 OG REMARK 620 2 ASP A 285 O 135.9 REMARK 620 3 HOH A 336 O 90.8 80.0 REMARK 620 4 HOH A 356 O 95.6 88.8 168.6 REMARK 620 5 HOH A 374 O 107.2 116.2 93.1 94.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A3002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 379 O REMARK 620 2 HOH A 396 O 165.6 REMARK 620 3 HOH A 486 O 89.7 94.5 REMARK 620 4 HOH A 518 O 93.2 99.2 103.5 REMARK 620 5 NAP A2000 O3D 89.7 82.9 165.9 90.6 REMARK 620 6 NAP A2000 O2D 80.9 84.8 100.8 155.0 65.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 2000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 3002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LZX RELATED DB: PDB DBREF 3LZW A 1 332 UNP O05268 FENR2_BACSU 1 332 SEQRES 1 A 332 MET ARG GLU ASP THR LYS VAL TYR ASP ILE THR ILE ILE SEQRES 2 A 332 GLY GLY GLY PRO VAL GLY LEU PHE THR ALA PHE TYR GLY SEQRES 3 A 332 GLY MET ARG GLN ALA SER VAL LYS ILE ILE GLU SER LEU SEQRES 4 A 332 PRO GLN LEU GLY GLY GLN LEU SER ALA LEU TYR PRO GLU SEQRES 5 A 332 LYS TYR ILE TYR ASP VAL ALA GLY PHE PRO LYS ILE ARG SEQRES 6 A 332 ALA GLN GLU LEU ILE ASN ASN LEU LYS GLU GLN MET ALA SEQRES 7 A 332 LYS PHE ASP GLN THR ILE CYS LEU GLU GLN ALA VAL GLU SEQRES 8 A 332 SER VAL GLU LYS GLN ALA ASP GLY VAL PHE LYS LEU VAL SEQRES 9 A 332 THR ASN GLU GLU THR HIS TYR SER LYS THR VAL ILE ILE SEQRES 10 A 332 THR ALA GLY ASN GLY ALA PHE LYS PRO ARG LYS LEU GLU SEQRES 11 A 332 LEU GLU ASN ALA GLU GLN TYR GLU GLY LYS ASN LEU HIS SEQRES 12 A 332 TYR PHE VAL ASP ASP LEU GLN LYS PHE ALA GLY ARG ARG SEQRES 13 A 332 VAL ALA ILE LEU GLY GLY GLY ASP SER ALA VAL ASP TRP SEQRES 14 A 332 ALA LEU MET LEU GLU PRO ILE ALA LYS GLU VAL SER ILE SEQRES 15 A 332 ILE HIS ARG ARG ASP LYS PHE ARG ALA HIS GLU HIS SER SEQRES 16 A 332 VAL GLU ASN LEU HIS ALA SER LYS VAL ASN VAL LEU THR SEQRES 17 A 332 PRO PHE VAL PRO ALA GLU LEU ILE GLY GLU ASP LYS ILE SEQRES 18 A 332 GLU GLN LEU VAL LEU GLU GLU VAL LYS GLY ASP ARG LYS SEQRES 19 A 332 GLU ILE LEU GLU ILE ASP ASP LEU ILE VAL ASN TYR GLY SEQRES 20 A 332 PHE VAL SER SER LEU GLY PRO ILE LYS ASN TRP GLY LEU SEQRES 21 A 332 ASP ILE GLU LYS ASN SER ILE VAL VAL LYS SER THR MET SEQRES 22 A 332 GLU THR ASN ILE GLU GLY PHE PHE ALA ALA GLY ASP ILE SEQRES 23 A 332 CYS THR TYR GLU GLY LYS VAL ASN LEU ILE ALA SER GLY SEQRES 24 A 332 PHE GLY GLU ALA PRO THR ALA VAL ASN ASN ALA LYS ALA SEQRES 25 A 332 TYR MET ASP PRO LYS ALA ARG VAL GLN PRO LEU HIS SER SEQRES 26 A 332 THR SER LEU PHE GLU ASN LYS HET FAD A1000 53 HET NAP A2000 48 HET NA A3001 1 HET NA A3002 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM NA SODIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *240(H2 O) HELIX 1 1 GLY A 16 ARG A 29 1 14 HELIX 2 2 GLY A 43 TYR A 50 1 8 HELIX 3 3 ALA A 66 ALA A 78 1 13 HELIX 4 4 ASN A 133 GLU A 138 5 6 HELIX 5 5 ASP A 148 ALA A 153 5 6 HELIX 6 6 GLY A 163 GLU A 174 1 12 HELIX 7 7 HIS A 192 SER A 202 1 11 HELIX 8 8 LEU A 252 TRP A 258 5 7 HELIX 9 9 LEU A 295 ASP A 315 1 21 HELIX 10 10 HIS A 324 PHE A 329 1 6 SHEET 1 A 6 THR A 83 CYS A 85 0 SHEET 2 A 6 VAL A 33 ILE A 36 1 N ILE A 35 O CYS A 85 SHEET 3 A 6 ARG A 2 ILE A 13 1 N ILE A 12 O LYS A 34 SHEET 4 A 6 GLU A 108 ILE A 117 1 O THR A 109 N ASP A 4 SHEET 5 A 6 PHE A 101 THR A 105 -1 N LEU A 103 O HIS A 110 SHEET 6 A 6 VAL A 90 LYS A 95 -1 N GLU A 94 O LYS A 102 SHEET 1 B 5 THR A 83 CYS A 85 0 SHEET 2 B 5 VAL A 33 ILE A 36 1 N ILE A 35 O CYS A 85 SHEET 3 B 5 ARG A 2 ILE A 13 1 N ILE A 12 O LYS A 34 SHEET 4 B 5 GLU A 108 ILE A 117 1 O THR A 109 N ASP A 4 SHEET 5 B 5 PHE A 280 ALA A 282 1 O PHE A 281 N VAL A 115 SHEET 1 C 2 TYR A 54 ILE A 55 0 SHEET 2 C 2 ILE A 64 ARG A 65 -1 O ILE A 64 N ILE A 55 SHEET 1 D 2 LYS A 125 PRO A 126 0 SHEET 2 D 2 PHE A 248 VAL A 249 -1 O VAL A 249 N LYS A 125 SHEET 1 E 5 LEU A 142 HIS A 143 0 SHEET 2 E 5 ASP A 241 VAL A 244 1 O LEU A 242 N HIS A 143 SHEET 3 E 5 ARG A 156 LEU A 160 1 N LEU A 160 O ILE A 243 SHEET 4 E 5 GLU A 179 ILE A 183 1 O GLU A 179 N VAL A 157 SHEET 5 E 5 ASN A 205 LEU A 207 1 O LEU A 207 N ILE A 182 SHEET 1 F 3 PHE A 210 ILE A 216 0 SHEET 2 F 3 GLN A 223 GLU A 228 -1 O VAL A 225 N ALA A 213 SHEET 3 F 3 LYS A 234 GLU A 238 -1 O GLU A 235 N LEU A 226 SHEET 1 G 3 ILE A 262 GLU A 263 0 SHEET 2 G 3 SER A 266 VAL A 268 -1 O SER A 266 N GLU A 263 SHEET 3 G 3 CYS A 287 THR A 288 1 O THR A 288 N ILE A 267 LINK OG SER A 266 NA NA A3001 1555 1555 2.27 LINK O ASP A 285 NA NA A3001 1555 1555 2.23 LINK O HOH A 336 NA NA A3001 1555 1555 2.44 LINK O HOH A 356 NA NA A3001 1555 1555 2.53 LINK O HOH A 374 NA NA A3001 1555 1555 2.38 LINK O HOH A 379 NA NA A3002 1555 1555 2.62 LINK O HOH A 396 NA NA A3002 1555 1555 2.41 LINK O HOH A 486 NA NA A3002 1555 1555 2.38 LINK O HOH A 518 NA NA A3002 1555 1555 2.25 LINK O3D NAP A2000 NA NA A3002 1555 1555 2.39 LINK O2D NAP A2000 NA NA A3002 1555 1555 2.43 CISPEP 1 THR A 208 PRO A 209 0 -5.08 SITE 1 AC1 35 ILE A 13 GLY A 14 GLY A 16 PRO A 17 SITE 2 AC1 35 VAL A 18 ILE A 36 GLU A 37 SER A 38 SITE 3 AC1 35 GLY A 44 GLN A 45 LEU A 46 TYR A 50 SITE 4 AC1 35 ILE A 55 ASP A 57 GLN A 88 ALA A 89 SITE 5 AC1 35 VAL A 90 THR A 118 ALA A 119 GLY A 120 SITE 6 AC1 35 GLY A 122 ALA A 123 PHE A 124 GLY A 284 SITE 7 AC1 35 ASP A 285 LEU A 295 ILE A 296 HIS A 324 SITE 8 AC1 35 SER A 325 THR A 326 HOH A 334 HOH A 335 SITE 9 AC1 35 HOH A 340 HOH A 346 HOH A 406 SITE 1 AC2 26 ALA A 48 LEU A 49 GLU A 52 LYS A 140 SITE 2 AC2 26 GLY A 162 GLY A 163 ASP A 164 SER A 165 SITE 3 AC2 26 ASP A 168 HIS A 184 ARG A 185 ARG A 186 SITE 4 AC2 26 ARG A 190 HIS A 192 ASN A 245 TYR A 246 SITE 5 AC2 26 GLY A 247 HOH A 343 HOH A 349 HOH A 383 SITE 6 AC2 26 HOH A 402 HOH A 416 HOH A 454 HOH A 535 SITE 7 AC2 26 HOH A 567 NA A3002 SITE 1 AC3 5 SER A 266 ASP A 285 HOH A 336 HOH A 356 SITE 2 AC3 5 HOH A 374 SITE 1 AC4 5 HOH A 379 HOH A 396 HOH A 486 HOH A 518 SITE 2 AC4 5 NAP A2000 CRYST1 63.900 135.724 39.191 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015649 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007368 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025516 0.00000