PDB Short entry for 3M09 HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 02-MAR-10 3M09 TITLE F98Y TMP-RESISTANT DIHYDROFOLATE REDUCTASE FROM STAPHYLOCOCCUS AUREUS TITLE 2 WITH INHIBITOR RAB1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHFR; COMPND 5 EC: 1.5.1.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: FOLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET101D KEYWDS FOLATE, DHFR, ANTIMICROBIAL, ANTIBIOTIC RESISTANCE, NADP, ONE-CARBON KEYWDS 2 METABOLISM, OXIDOREDUCTASE, OXIDOREDUCTASE-OXIDOREDUCTASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.R.BOURNE,W.W.BARROW REVDAT 4 21-FEB-24 3M09 1 REMARK REVDAT 3 13-OCT-21 3M09 1 REMARK SEQADV REVDAT 2 01-SEP-10 3M09 1 JRNL REVDAT 1 14-JUL-10 3M09 0 JRNL AUTH C.R.BOURNE,E.W.BARROW,R.A.BUNCE,P.C.BOURNE,K.D.BERLIN, JRNL AUTH 2 W.W.BARROW JRNL TITL INHIBITION OF ANTIBIOTIC-RESISTANT STAPHYLOCOCCUS AUREUS BY JRNL TITL 2 THE BROAD-SPECTRUM DIHYDROFOLATE REDUCTASE INHIBITOR RAB1. JRNL REF ANTIMICROB.AGENTS CHEMOTHER. V. 54 3825 2010 JRNL REFN ISSN 0066-4804 JRNL PMID 20606069 JRNL DOI 10.1128/AAC.00361-10 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.R.BOURNE,R.A.BUNCE,P.C.BOURNE,K.D.BERLIN,E.W.BARROW, REMARK 1 AUTH 2 W.W.BARROW REMARK 1 TITL CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS DIHYDROFOLATE REMARK 1 TITL 2 REDUCTASE WITH THE DIHYDROPHTHALAZINE-BASED TRIMETHOPRIM REMARK 1 TITL 3 DERIVATIVE RAB1 PROVIDES A STRUCTURAL EXPLANATION OF POTENCY REMARK 1 TITL 4 AND SELECTIVITY REMARK 1 REF ANTIMICROB.AGENTS CHEMOTHER. V. 53 3065 2009 REMARK 1 REFN ISSN 0066-4804 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5980 - 4.3270 1.00 2271 255 0.1630 0.1770 REMARK 3 2 4.3270 - 3.4350 1.00 2255 253 0.1380 0.1500 REMARK 3 3 3.4350 - 3.0010 1.00 2281 259 0.1630 0.1810 REMARK 3 4 3.0010 - 2.7270 1.00 2263 245 0.1670 0.2290 REMARK 3 5 2.7270 - 2.5310 1.00 2273 251 0.1730 0.2450 REMARK 3 6 2.5310 - 2.3820 1.00 2264 255 0.1730 0.2080 REMARK 3 7 2.3820 - 2.2630 1.00 2256 258 0.1690 0.2250 REMARK 3 8 2.2630 - 2.1640 1.00 2283 254 0.1710 0.2240 REMARK 3 9 2.1640 - 2.0810 1.00 2267 251 0.1750 0.2430 REMARK 3 10 2.0810 - 2.0090 1.00 2274 258 0.1880 0.2310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 39.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03100 REMARK 3 B22 (A**2) : -0.03100 REMARK 3 B33 (A**2) : 0.06300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1445 REMARK 3 ANGLE : 1.018 1976 REMARK 3 CHIRALITY : 0.082 218 REMARK 3 PLANARITY : 0.007 241 REMARK 3 DIHEDRAL : 28.308 593 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:51) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0443 -29.7673 5.8051 REMARK 3 T TENSOR REMARK 3 T11: 0.1135 T22: 0.0269 REMARK 3 T33: 0.0672 T12: 0.0035 REMARK 3 T13: -0.0470 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2382 L22: 0.0508 REMARK 3 L33: 0.8678 L12: -0.1057 REMARK 3 L13: -0.0823 L23: 0.0612 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: 0.0230 S13: -0.0937 REMARK 3 S21: -0.0514 S22: -0.0079 S23: 0.0857 REMARK 3 S31: 0.2980 S32: 0.0055 S33: -0.0243 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 52:90) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6475 -36.7159 -4.5829 REMARK 3 T TENSOR REMARK 3 T11: 0.2373 T22: 0.0820 REMARK 3 T33: 0.1430 T12: 0.0523 REMARK 3 T13: -0.0323 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.0462 L22: 0.4669 REMARK 3 L33: 0.4168 L12: -0.6938 REMARK 3 L13: 0.3402 L23: -0.2677 REMARK 3 S TENSOR REMARK 3 S11: 0.2610 S12: 0.2041 S13: -0.2584 REMARK 3 S21: -0.3884 S22: -0.1239 S23: 0.0641 REMARK 3 S31: 0.2873 S32: 0.1083 S33: -0.0871 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 91:161) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9105 -18.8567 3.7194 REMARK 3 T TENSOR REMARK 3 T11: 0.0535 T22: 0.0162 REMARK 3 T33: 0.0484 T12: -0.0067 REMARK 3 T13: -0.0205 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.4132 L22: 0.2503 REMARK 3 L33: 0.5408 L12: -0.0705 REMARK 3 L13: 0.1764 L23: -0.0435 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: 0.0359 S13: 0.0737 REMARK 3 S21: -0.0172 S22: 0.0458 S23: -0.0732 REMARK 3 S31: 0.1028 S32: -0.0017 S33: -0.0161 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3M09 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000057944. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13953 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.009 REMARK 200 RESOLUTION RANGE LOW (A) : 42.395 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : 0.40300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 6000, 0.15 M SODIUM ACETATE, REMARK 280 0.1M MES BUFFER, PH 6.5, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.96000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.92000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.94000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.90000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 17.98000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 35.96000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 71.92000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 89.90000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.94000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 17.98000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH21 ARG A 118 HH21 ARG A 118 11555 1.00 REMARK 500 H TYR A 126 H12 GOL A 202 6555 1.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 38 -152.23 -122.11 REMARK 500 ASP A 142 -161.65 -168.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RAR A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M08 RELATED DB: PDB DBREF 3M09 A 1 157 UNP P0A017 DYR_STAAU 2 158 SEQADV 3M09 TYR A 98 UNP P0A017 PHE 99 ENGINEERED MUTATION SEQADV 3M09 ALA A 158 UNP P0A017 EXPRESSION TAG SEQADV 3M09 VAL A 159 UNP P0A017 EXPRESSION TAG SEQADV 3M09 PRO A 160 UNP P0A017 EXPRESSION TAG SEQADV 3M09 ARG A 161 UNP P0A017 EXPRESSION TAG SEQRES 1 A 161 THR LEU SER ILE LEU VAL ALA HIS ASP LEU GLN ARG VAL SEQRES 2 A 161 ILE GLY PHE GLU ASN GLN LEU PRO TRP HIS LEU PRO ASN SEQRES 3 A 161 ASP LEU LYS HIS VAL LYS LYS LEU SER THR GLY HIS THR SEQRES 4 A 161 LEU VAL MET GLY ARG LYS THR PHE GLU SER ILE GLY LYS SEQRES 5 A 161 PRO LEU PRO ASN ARG ARG ASN VAL VAL LEU THR SER ASP SEQRES 6 A 161 THR SER PHE ASN VAL GLU GLY VAL ASP VAL ILE HIS SER SEQRES 7 A 161 ILE GLU ASP ILE TYR GLN LEU PRO GLY HIS VAL PHE ILE SEQRES 8 A 161 PHE GLY GLY GLN THR LEU TYR GLU GLU MET ILE ASP LYS SEQRES 9 A 161 VAL ASP ASP MET TYR ILE THR VAL ILE GLU GLY LYS PHE SEQRES 10 A 161 ARG GLY ASP THR PHE PHE PRO PRO TYR THR PHE GLU ASP SEQRES 11 A 161 TRP GLU VAL ALA SER SER VAL GLU GLY LYS LEU ASP GLU SEQRES 12 A 161 LYS ASN THR ILE PRO HIS THR PHE LEU HIS LEU ILE ARG SEQRES 13 A 161 LYS ALA VAL PRO ARG HET RAR A 200 50 HET NAP A 201 72 HET GOL A 202 14 HETNAM RAR 5-(3,4-DIMETHOXY-5-{(1E)-3-OXO-3-[(1S)-1- HETNAM 2 RAR PROPYLPHTHALAZIN-2(1H)-YL]PROP-1-EN-1-YL}BENZYL) HETNAM 3 RAR PYRIMIDINE-2,4-DIAMINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GOL GLYCEROL HETSYN RAR (S)-3-(5-((2,4-DIAMINOPYRIMIDIN-5-YL)METHYL)-2,3- HETSYN 2 RAR DIMETHOXYPHENYL)-1-(1-PROPYLPHTHALAZIN-2(1H)-YL)PROP- HETSYN 3 RAR 2-EN-1-ONE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 RAR C27 H30 N6 O3 FORMUL 3 NAP C21 H28 N7 O17 P3 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *166(H2 O) HELIX 1 1 LEU A 24 THR A 36 1 13 HELIX 2 2 ARG A 44 GLY A 51 1 8 HELIX 3 3 SER A 78 LEU A 85 5 8 HELIX 4 4 GLY A 94 ILE A 102 1 9 SHEET 1 A 8 VAL A 73 ILE A 76 0 SHEET 2 A 8 ARG A 58 LEU A 62 1 N ASN A 59 O ASP A 74 SHEET 3 A 8 THR A 39 GLY A 43 1 N LEU A 40 O VAL A 60 SHEET 4 A 8 VAL A 89 ILE A 91 1 O PHE A 90 N THR A 39 SHEET 5 A 8 LEU A 2 ASP A 9 1 N SER A 3 O ILE A 91 SHEET 6 A 8 ASP A 107 ILE A 113 1 O TYR A 109 N ILE A 4 SHEET 7 A 8 HIS A 149 ARG A 156 -1 O LEU A 152 N ILE A 110 SHEET 8 A 8 TRP A 131 GLU A 138 -1 N VAL A 137 O PHE A 151 SHEET 1 B 2 VAL A 13 GLY A 15 0 SHEET 2 B 2 THR A 121 PHE A 122 -1 O THR A 121 N ILE A 14 CISPEP 1 GLY A 93 GLY A 94 0 -0.97 SITE 1 AC1 19 LEU A 5 VAL A 6 ALA A 7 ASP A 27 SITE 2 AC1 19 LEU A 28 LYS A 29 VAL A 31 LYS A 32 SITE 3 AC1 19 SER A 49 ILE A 50 LYS A 52 LEU A 54 SITE 4 AC1 19 PRO A 55 ARG A 57 PHE A 92 TYR A 98 SITE 5 AC1 19 NAP A 201 HOH A 230 HOH A 261 SITE 1 AC2 33 VAL A 6 ALA A 7 ILE A 14 GLY A 15 SITE 2 AC2 33 PHE A 16 ASN A 18 GLN A 19 LEU A 20 SITE 3 AC2 33 TRP A 22 GLY A 43 ARG A 44 LYS A 45 SITE 4 AC2 33 THR A 46 LEU A 62 THR A 63 SER A 64 SITE 5 AC2 33 HIS A 77 ILE A 79 PHE A 92 GLY A 93 SITE 6 AC2 33 GLY A 94 GLN A 95 THR A 96 TYR A 98 SITE 7 AC2 33 GLU A 100 THR A 121 HOH A 166 HOH A 176 SITE 8 AC2 33 HOH A 188 HOH A 193 HOH A 198 RAR A 200 SITE 9 AC2 33 HOH A 245 SITE 1 AC3 6 ARG A 12 PRO A 125 TYR A 126 PHE A 128 SITE 2 AC3 6 GLU A 132 HOH A 195 CRYST1 79.180 79.180 107.880 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012629 0.007292 0.000000 0.00000 SCALE2 0.000000 0.014583 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009270 0.00000