PDB Short entry for 3M6L HEADER TRANSFERASE 15-MAR-10 3M6L TITLE CRYSTAL STRUCTURE OF TRANSKETOLASE IN COMPLEX WITH THIAMINE TITLE 2 DIPHOSPHATE, RIBOSE-5-PHOSPHATE AND CALCIUM ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSKETOLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.2.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 192222; SOURCE 4 STRAIN: NCTC 11168; SOURCE 5 GENE: TKT, CJ1645; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS TRANSKETOLASE, THIAMINE PYROPHOSPHATE, CALCIUM BINDING, RIBOSE-5- KEYWDS 2 PHOSPHATE BOUND, NIAID, CSGID, TRANSFERASE, STRUCTURAL GENOMICS, KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,M.MAKOWSKA-GRZYSKA,N.MALTSEVA,A.JOACHIMIAK,W.ANDERSON,CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 06-SEP-23 3M6L 1 REMARK LINK REVDAT 3 08-NOV-17 3M6L 1 REMARK REVDAT 2 01-OCT-14 3M6L 1 AUTHOR VERSN REVDAT 1 28-APR-10 3M6L 0 JRNL AUTH B.NOCEK,M.MAKOWSKA-GRZYSKA,N.MALTSEVA,S.GRIMSHAW, JRNL AUTH 2 A.JOACHIMIAK,W.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF TRANSKETOLASE IN COMPLEX WITH THIAMINE JRNL TITL 2 DIPHOSPHATE, RIBOSE-5-PHOSPHATE AND CALCIUM ION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.900 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 72677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3821 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3916 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 221 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 565 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : 1.06000 REMARK 3 B33 (A**2) : 0.69000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.83000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.653 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5077 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3449 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6842 ; 2.170 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8447 ; 1.122 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 635 ; 6.065 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;37.200 ;25.152 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 877 ;14.111 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;14.355 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 738 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5658 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1003 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3142 ; 1.404 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1294 ; 0.486 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4998 ; 2.241 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1935 ; 3.709 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1842 ; 5.794 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3M6L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76588 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3M34 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 20 % PEG 1000, 0.1 M NA/K REMARK 280 PHOSPHATE, 10MM TPP, 10 MM R5P, 1MM CACL2, PH 6.2, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.46200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.73100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.46200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.73100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 23.21572 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -65.63198 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 827 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 855 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 524 CG CD CE NZ REMARK 470 LYS A 570 CG CD CE NZ REMARK 470 LYS A 632 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 368 CA CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 554 CB CYS A 554 SG -0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 143 17.02 -154.33 REMARK 500 ASN A 183 16.87 59.95 REMARK 500 ASN A 195 30.00 -147.78 REMARK 500 ALA A 246 35.98 -97.41 REMARK 500 ILE A 444 -19.90 -44.74 REMARK 500 ILE A 456 -58.96 -135.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 152 OD2 REMARK 620 2 ASN A 182 OD1 88.8 REMARK 620 3 ILE A 184 O 97.7 85.8 REMARK 620 4 HOH A 794 O 80.2 92.4 177.2 REMARK 620 5 TPP A5001 O2B 164.8 92.1 97.5 84.6 REMARK 620 6 TPP A5001 O2A 96.7 174.3 91.9 90.1 83.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TPP A 5001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE R5P A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 633 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3M34 RELATED DB: PDB REMARK 900 RELATED ID: 3L84 RELATED DB: PDB REMARK 900 RELATED ID: IDP90564 RELATED DB: TARGETDB DBREF 3M6L A 1 632 UNP Q0P7Y3 Q0P7Y3_CAMJE 1 632 SEQADV 3M6L SER A -2 UNP Q0P7Y3 EXPRESSION TAG SEQADV 3M6L ASN A -1 UNP Q0P7Y3 EXPRESSION TAG SEQADV 3M6L ALA A 0 UNP Q0P7Y3 EXPRESSION TAG SEQRES 1 A 635 SER ASN ALA MSE ASN ILE GLN ILE LEU GLN GLU GLN ALA SEQRES 2 A 635 ASN THR LEU ARG PHE LEU SER ALA ASP MSE VAL GLN LYS SEQRES 3 A 635 ALA ASN SER GLY HIS PRO GLY ALA PRO LEU GLY LEU ALA SEQRES 4 A 635 ASP ILE LEU SER VAL LEU SER TYR HIS LEU LYS HIS ASN SEQRES 5 A 635 PRO LYS ASN PRO THR TRP LEU ASN ARG ASP ARG LEU VAL SEQRES 6 A 635 PHE SER GLY GLY HIS ALA SER ALA LEU LEU TYR SER PHE SEQRES 7 A 635 LEU HIS LEU SER GLY TYR ASP LEU SER LEU GLU ASP LEU SEQRES 8 A 635 LYS ASN PHE ARG GLN LEU HIS SER LYS THR PRO GLY HIS SEQRES 9 A 635 PRO GLU ILE SER THR LEU GLY VAL GLU ILE ALA THR GLY SEQRES 10 A 635 PRO LEU GLY GLN GLY VAL ALA ASN ALA VAL GLY PHE ALA SEQRES 11 A 635 MSE ALA ALA LYS LYS ALA GLN ASN LEU LEU GLY SER ASP SEQRES 12 A 635 LEU ILE ASP HIS LYS ILE TYR CYS LEU CYS GLY ASP GLY SEQRES 13 A 635 ASP LEU GLN GLU GLY ILE SER TYR GLU ALA CYS SER LEU SEQRES 14 A 635 ALA GLY LEU HIS LYS LEU ASP ASN PHE ILE LEU ILE TYR SEQRES 15 A 635 ASP SER ASN ASN ILE SER ILE GLU GLY ASP VAL GLY LEU SEQRES 16 A 635 ALA PHE ASN GLU ASN VAL LYS MSE ARG PHE GLU ALA GLN SEQRES 17 A 635 GLY PHE GLU VAL LEU SER ILE ASN GLY HIS ASP TYR GLU SEQRES 18 A 635 GLU ILE ASN LYS ALA LEU GLU GLN ALA LYS LYS SER THR SEQRES 19 A 635 LYS PRO CYS LEU ILE ILE ALA LYS THR THR ILE ALA LYS SEQRES 20 A 635 GLY ALA GLY GLU LEU GLU GLY SER HIS LYS SER HIS GLY SEQRES 21 A 635 ALA PRO LEU GLY GLU GLU VAL ILE LYS LYS ALA LYS GLU SEQRES 22 A 635 GLN ALA GLY PHE ASP PRO ASN ILE SER PHE HIS ILE PRO SEQRES 23 A 635 GLN ALA SER LYS ILE ARG PHE GLU SER ALA VAL GLU LEU SEQRES 24 A 635 GLY ASP LEU GLU GLU ALA LYS TRP LYS ASP LYS LEU GLU SEQRES 25 A 635 LYS SER ALA LYS LYS GLU LEU LEU GLU ARG LEU LEU ASN SEQRES 26 A 635 PRO ASP PHE ASN LYS ILE ALA TYR PRO ASP PHE LYS GLY SEQRES 27 A 635 LYS ASP LEU ALA THR ARG ASP SER ASN GLY GLU ILE LEU SEQRES 28 A 635 ASN VAL LEU ALA LYS ASN LEU GLU GLY PHE LEU GLY GLY SEQRES 29 A 635 SER ALA ASP LEU GLY PRO SER ASN LYS THR GLU LEU HIS SEQRES 30 A 635 SER MSE GLY ASP PHE VAL GLU GLY LYS ASN ILE HIS PHE SEQRES 31 A 635 GLY ILE ARG GLU HIS ALA MSE ALA ALA ILE ASN ASN ALA SEQRES 32 A 635 PHE ALA ARG TYR GLY ILE PHE LEU PRO PHE SER ALA THR SEQRES 33 A 635 PHE PHE ILE PHE SER GLU TYR LEU LYS PRO ALA ALA ARG SEQRES 34 A 635 ILE ALA ALA LEU MSE LYS ILE LYS HIS PHE PHE ILE PHE SEQRES 35 A 635 THR HIS ASP SER ILE GLY VAL GLY GLU ASP GLY PRO THR SEQRES 36 A 635 HIS GLN PRO ILE GLU GLN LEU SER THR PHE ARG ALA MSE SEQRES 37 A 635 PRO ASN PHE LEU THR PHE ARG PRO ALA ASP GLY VAL GLU SEQRES 38 A 635 ASN VAL LYS ALA TRP GLN ILE ALA LEU ASN ALA ASP ILE SEQRES 39 A 635 PRO SER ALA PHE VAL LEU SER ARG GLN LYS LEU LYS ALA SEQRES 40 A 635 LEU ASN GLU PRO VAL PHE GLY ASP VAL LYS ASN GLY ALA SEQRES 41 A 635 TYR LEU LEU LYS GLU SER LYS GLU ALA LYS PHE THR LEU SEQRES 42 A 635 LEU ALA SER GLY SER GLU VAL TRP LEU CYS LEU GLU SER SEQRES 43 A 635 ALA ASN GLU LEU GLU LYS GLN GLY PHE ALA CYS ASN VAL SEQRES 44 A 635 VAL SER MSE PRO CYS PHE GLU LEU PHE GLU LYS GLN ASP SEQRES 45 A 635 LYS ALA TYR GLN GLU ARG LEU LEU LYS GLY GLU VAL ILE SEQRES 46 A 635 GLY VAL GLU ALA ALA HIS SER ASN GLU LEU TYR LYS PHE SEQRES 47 A 635 CYS HIS LYS VAL TYR GLY ILE GLU SER PHE GLY GLU SER SEQRES 48 A 635 GLY LYS ASP LYS ASP VAL PHE GLU ARG PHE GLY PHE SER SEQRES 49 A 635 VAL SER LYS LEU VAL ASN PHE ILE LEU SER LYS MODRES 3M6L MSE A 1 MET SELENOMETHIONINE MODRES 3M6L MSE A 20 MET SELENOMETHIONINE MODRES 3M6L MSE A 128 MET SELENOMETHIONINE MODRES 3M6L MSE A 200 MET SELENOMETHIONINE MODRES 3M6L MSE A 376 MET SELENOMETHIONINE MODRES 3M6L MSE A 394 MET SELENOMETHIONINE MODRES 3M6L MSE A 431 MET SELENOMETHIONINE MODRES 3M6L MSE A 465 MET SELENOMETHIONINE MODRES 3M6L MSE A 559 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 20 8 HET MSE A 128 8 HET MSE A 200 13 HET MSE A 376 8 HET MSE A 394 8 HET MSE A 431 8 HET MSE A 465 8 HET MSE A 559 8 HET GOL A2001 6 HET TPP A5001 26 HET CA A 801 1 HET EDO A1002 4 HET R5P A 701 14 HET PO4 A 633 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM TPP THIAMINE DIPHOSPHATE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM R5P RIBOSE-5-PHOSPHATE HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 TPP C12 H19 N4 O7 P2 S 1+ FORMUL 4 CA CA 2+ FORMUL 5 EDO C2 H6 O2 FORMUL 6 R5P C5 H11 O8 P FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *565(H2 O) HELIX 1 1 ASN A 2 ASN A 25 1 24 HELIX 2 2 PRO A 29 LEU A 46 1 18 HELIX 3 3 GLY A 65 HIS A 67 5 3 HELIX 4 4 ALA A 68 GLY A 80 1 13 HELIX 5 5 SER A 84 ASN A 90 1 7 HELIX 6 6 GLY A 117 GLY A 138 1 22 HELIX 7 7 ASP A 152 GLU A 157 1 6 HELIX 8 8 GLU A 157 HIS A 170 1 14 HELIX 9 9 GLY A 191 ALA A 193 5 3 HELIX 10 10 ASN A 197 GLN A 205 1 9 HELIX 11 11 ASP A 216 LYS A 229 1 14 HELIX 12 12 ALA A 246 GLU A 250 5 5 HELIX 13 13 SER A 252 HIS A 256 5 5 HELIX 14 14 GLY A 261 GLY A 273 1 13 HELIX 15 15 PRO A 283 SER A 311 1 29 HELIX 16 16 LYS A 313 ASN A 322 1 10 HELIX 17 17 ALA A 339 LEU A 355 1 17 HELIX 18 18 LEU A 365 LYS A 370 1 6 HELIX 19 19 ARG A 390 GLY A 405 1 16 HELIX 20 20 PHE A 417 LYS A 432 1 16 HELIX 21 21 SER A 443 GLY A 447 5 5 HELIX 22 22 GLY A 450 GLN A 454 5 5 HELIX 23 23 GLU A 457 MSE A 465 1 9 HELIX 24 24 ASP A 475 ALA A 489 1 15 HELIX 25 25 ASP A 512 GLY A 516 5 5 HELIX 26 26 GLU A 536 GLN A 550 1 15 HELIX 27 27 CYS A 561 LYS A 567 1 7 HELIX 28 28 ASP A 569 LEU A 577 1 9 HELIX 29 29 SER A 589 PHE A 595 5 7 HELIX 30 30 LYS A 610 PHE A 618 1 9 HELIX 31 31 SER A 621 LEU A 630 1 10 SHEET 1 A 5 ARG A 60 PHE A 63 0 SHEET 2 A 5 ILE A 146 GLY A 151 1 O TYR A 147 N VAL A 62 SHEET 3 A 5 PHE A 175 SER A 181 1 O ILE A 178 N CYS A 148 SHEET 4 A 5 CYS A 234 LYS A 239 1 O CYS A 234 N LEU A 177 SHEET 5 A 5 GLU A 208 ASN A 213 1 N LEU A 210 O ILE A 237 SHEET 1 B 2 ILE A 184 SER A 185 0 SHEET 2 B 2 GLY A 188 ASP A 189 -1 O GLY A 188 N SER A 185 SHEET 1 C 6 ASN A 384 HIS A 386 0 SHEET 2 C 6 PHE A 358 SER A 362 1 N GLY A 360 O ILE A 385 SHEET 3 C 6 LEU A 408 PHE A 414 1 O PHE A 410 N GLY A 361 SHEET 4 C 6 PHE A 436 THR A 440 1 O ILE A 438 N SER A 411 SHEET 5 C 6 SER A 493 VAL A 496 1 O PHE A 495 N PHE A 439 SHEET 6 C 6 LEU A 469 PHE A 471 1 N PHE A 471 O VAL A 496 SHEET 1 D 5 TYR A 518 LYS A 521 0 SHEET 2 D 5 CYS A 554 SER A 558 -1 O VAL A 556 N LEU A 520 SHEET 3 D 5 PHE A 528 ALA A 532 1 N LEU A 530 O VAL A 557 SHEET 4 D 5 GLU A 580 VAL A 584 1 O ILE A 582 N THR A 529 SHEET 5 D 5 LYS A 598 TYR A 600 1 O TYR A 600 N GLY A 583 LINK C MSE A 1 N ASN A 2 1555 1555 1.34 LINK C ASP A 19 N MSE A 20 1555 1555 1.34 LINK C MSE A 20 N VAL A 21 1555 1555 1.34 LINK C ALA A 127 N MSE A 128 1555 1555 1.34 LINK C MSE A 128 N ALA A 129 1555 1555 1.31 LINK C LYS A 199 N MSE A 200 1555 1555 1.34 LINK C MSE A 200 N ARG A 201 1555 1555 1.32 LINK C SER A 375 N MSE A 376 1555 1555 1.34 LINK C MSE A 376 N GLY A 377 1555 1555 1.31 LINK C ALA A 393 N MSE A 394 1555 1555 1.34 LINK C MSE A 394 N ALA A 395 1555 1555 1.36 LINK C LEU A 430 N MSE A 431 1555 1555 1.32 LINK C MSE A 431 N LYS A 432 1555 1555 1.31 LINK C ALA A 464 N MSE A 465 1555 1555 1.34 LINK C MSE A 465 N PRO A 466 1555 1555 1.30 LINK C SER A 558 N MSE A 559 1555 1555 1.36 LINK C MSE A 559 N PRO A 560 1555 1555 1.37 LINK OD2 ASP A 152 CA CA A 801 1555 1555 2.30 LINK OD1 ASN A 182 CA CA A 801 1555 1555 2.34 LINK O ILE A 184 CA CA A 801 1555 1555 2.34 LINK O HOH A 794 CA CA A 801 1555 1555 2.39 LINK CA CA A 801 O2B TPP A5001 1555 1555 2.28 LINK CA CA A 801 O2A TPP A5001 1555 1555 2.30 CISPEP 1 PHE A 379 VAL A 380 0 6.26 SITE 1 AC1 6 GLN A 9 SER A 43 ARG A 289 PHE A 290 SITE 2 AC1 6 SER A 292 HOH A 766 SITE 1 AC2 21 ALA A 31 HIS A 67 GLY A 114 LEU A 116 SITE 2 AC2 21 GLY A 151 ASP A 152 GLY A 153 GLU A 157 SITE 3 AC2 21 ASN A 182 ILE A 184 ILE A 186 ILE A 242 SITE 4 AC2 21 HIS A 256 ASP A 364 GLU A 391 PHE A 417 SITE 5 AC2 21 TYR A 420 R5P A 701 HOH A 756 CA A 801 SITE 6 AC2 21 HOH A1086 SITE 1 AC3 5 ASP A 152 ASN A 182 ILE A 184 HOH A 794 SITE 2 AC3 5 TPP A5001 SITE 1 AC4 2 PHE A 595 HOH A 872 SITE 1 AC5 14 HIS A 28 HIS A 101 ILE A 186 HIS A 256 SITE 2 AC5 14 ARG A 341 SER A 368 HIS A 441 ASP A 449 SITE 3 AC5 14 HIS A 453 ARG A 499 HOH A1195 HOH A1196 SITE 4 AC5 14 HOH A1197 TPP A5001 SITE 1 AC6 5 HIS A 281 PRO A 283 GLN A 284 HOH A 811 SITE 2 AC6 5 HOH A 822 CRYST1 130.924 71.462 69.617 90.00 109.48 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007638 0.000000 0.002701 0.00000 SCALE2 0.000000 0.013993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015236 0.00000 HETATM 1 N MSE A 1 -24.804 -26.191 -42.323 1.00 48.83 N HETATM 2 CA MSE A 1 -23.317 -26.331 -42.647 1.00 48.82 C HETATM 3 C MSE A 1 -23.151 -27.444 -43.656 1.00 47.46 C HETATM 4 O MSE A 1 -23.053 -28.611 -43.259 1.00 49.42 O HETATM 5 CB MSE A 1 -22.438 -26.675 -41.406 1.00 50.12 C HETATM 6 CG MSE A 1 -21.514 -25.546 -40.834 1.00 51.22 C HETATM 7 SE MSE A 1 -19.666 -25.975 -40.132 0.70 59.12 SE HETATM 8 CE MSE A 1 -18.716 -25.261 -41.659 1.00 45.30 C