PDB Short entry for 3MB5 HEADER TRANSFERASE 25-MAR-10 3MB5 TITLE CRYSTAL STRUCTURE OF P. ABYSSI TRNA M1A58 METHYLTRANSFERASE IN COMPLEX TITLE 2 WITH S-ADENOSYL-L-METHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.36; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 STRAIN: GE5; SOURCE 5 GENE: PAB0283, PIMT-LIKE, PYRAB04300; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS RNA METHYLTRANSFERASE, M1A, TRMI, INTERMOLECULAR CONTACTS, REGION- KEYWDS 2 SPECIFICITY, TETRAMER, DISULFIDE BOND, HYPERTHERMOSTABILITY, KEYWDS 3 METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GUELORGET,B.GOLINELLI-PIMPANEAU REVDAT 4 06-SEP-23 3MB5 1 REMARK SEQADV REVDAT 3 27-OCT-10 3MB5 1 JRNL REVDAT 2 02-JUN-10 3MB5 1 JRNL REVDAT 1 12-MAY-10 3MB5 0 JRNL AUTH A.GUELORGET,M.ROOVERS,V.GUERINEAU,C.BARBEY,X.LI, JRNL AUTH 2 B.GOLINELLI-PIMPANEAU JRNL TITL INSIGHTS INTO THE HYPERTHERMOSTABILITY AND UNUSUAL JRNL TITL 2 REGION-SPECIFICITY OF ARCHAEAL PYROCOCCUS ABYSSI TRNA JRNL TITL 3 M1A57/58 METHYLTRANSFERASE. JRNL REF NUCLEIC ACIDS RES. V. 38 6206 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20483913 JRNL DOI 10.1093/NAR/GKQ381 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.ROOVERS,J.WOUTERS,J.M.BUJNICKI,C.TRICOT,V.STALON, REMARK 1 AUTH 2 H.GROSJEAN,L.DROOGMANS REMARK 1 TITL A PRIMORDIAL RNA MODIFICATION ENZYME: THE CASE OF TRNA (M1A) REMARK 1 TITL 2 METHYLTRANSFERASE REMARK 1 REF NUCLEIC ACIDS RES. V. 32 465 2004 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 14739239 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2824 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 203 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.84000 REMARK 3 B22 (A**2) : 0.30000 REMARK 3 B33 (A**2) : -2.14000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.071 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.069 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.298 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.960 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2164 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2910 ; 1.373 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 6.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;35.229 ;22.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 386 ;11.611 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;11.294 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 317 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1589 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1275 ; 0.823 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2063 ; 1.538 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 889 ; 2.505 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 847 ; 4.214 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3MB5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000058333. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR CRYSTAL REMARK 200 OPTICS : BI-MORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56562 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB CODE 3LGA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8M AMMONIUM SULFATE, 0.2M AMMONIUM REMARK 280 ACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.63000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.16000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.63000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 55.16000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.27500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.63000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 55.16000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.27500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.63000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 55.16000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -89.26000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 -89.26000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 24 76.14 -100.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 257 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 259 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 260 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 261 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 262 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 263 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 264 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 265 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 266 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3LGA RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH SAH CRYSTALLIZED IN P31 SPACE GROUP REMARK 900 RELATED ID: 3LHD RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH SAH CRYSTALLIZED IN P212121 SPACE REMARK 900 GROUP DBREF 3MB5 A 1 253 UNP Q9V1J7 Q9V1J7_PYRAB 1 253 SEQADV 3MB5 LEU A 254 UNP Q9V1J7 EXPRESSION TAG SEQADV 3MB5 GLU A 255 UNP Q9V1J7 EXPRESSION TAG SEQRES 1 A 255 MET ILE ARG GLU GLY ASP LYS VAL VAL LEU VAL ASP PRO SEQRES 2 A 255 ARG GLY LYS ARG TYR LEU ILE THR VAL SER LYS ARG ASP SEQRES 3 A 255 PHE HIS THR ASP LEU GLY ILE LEU LYS LEU GLU GLU ILE SEQRES 4 A 255 ILE GLY ARG ASN PHE GLY GLU ALA ILE LYS SER HIS LYS SEQRES 5 A 255 GLY HIS GLU PHE LYS ILE LEU ARG PRO ARG ILE VAL ASP SEQRES 6 A 255 TYR LEU ASP LYS MET LYS ARG GLY PRO GLN ILE VAL HIS SEQRES 7 A 255 PRO LYS ASP ALA ALA LEU ILE VAL ALA TYR ALA GLY ILE SEQRES 8 A 255 SER PRO GLY ASP PHE ILE VAL GLU ALA GLY VAL GLY SER SEQRES 9 A 255 GLY ALA LEU THR LEU PHE LEU ALA ASN ILE VAL GLY PRO SEQRES 10 A 255 GLU GLY ARG VAL VAL SER TYR GLU ILE ARG GLU ASP PHE SEQRES 11 A 255 ALA LYS LEU ALA TRP GLU ASN ILE LYS TRP ALA GLY PHE SEQRES 12 A 255 ASP ASP ARG VAL THR ILE LYS LEU LYS ASP ILE TYR GLU SEQRES 13 A 255 GLY ILE GLU GLU GLU ASN VAL ASP HIS VAL ILE LEU ASP SEQRES 14 A 255 LEU PRO GLN PRO GLU ARG VAL VAL GLU HIS ALA ALA LYS SEQRES 15 A 255 ALA LEU LYS PRO GLY GLY PHE PHE VAL ALA TYR THR PRO SEQRES 16 A 255 CYS SER ASN GLN VAL MET ARG LEU HIS GLU LYS LEU ARG SEQRES 17 A 255 GLU PHE LYS ASP TYR PHE MET LYS PRO ARG THR ILE ASN SEQRES 18 A 255 VAL LEU VAL PHE ASP GLN GLU VAL LYS LYS GLU CYS MET SEQRES 19 A 255 ARG PRO ARG THR THR ALA LEU VAL HIS THR GLY TYR ILE SEQRES 20 A 255 THR PHE ALA ARG ARG ILE LEU GLU HET SAM A 301 27 HET SO4 A 256 5 HET SO4 A 257 5 HET SO4 A 258 5 HET SO4 A 259 5 HET EDO A 260 4 HET EDO A 261 4 HET EDO A 262 4 HET EDO A 263 4 HET EDO A 264 4 HET EDO A 265 4 HET ACT A 266 4 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SAM C15 H22 N6 O5 S FORMUL 3 SO4 4(O4 S 2-) FORMUL 7 EDO 6(C2 H6 O2) FORMUL 13 ACT C2 H3 O2 1- FORMUL 14 HOH *340(H2 O) HELIX 1 1 GLU A 37 ILE A 40 5 4 HELIX 2 2 ARG A 62 MET A 70 1 9 HELIX 3 3 HIS A 78 ALA A 89 1 12 HELIX 4 4 GLY A 105 GLY A 116 1 12 HELIX 5 5 ARG A 127 GLY A 142 1 16 HELIX 6 6 ASP A 153 GLY A 157 5 5 HELIX 7 7 GLN A 172 ARG A 175 5 4 HELIX 8 8 VAL A 176 ALA A 183 1 8 HELIX 9 9 CYS A 196 PHE A 210 1 15 HELIX 10 10 LYS A 211 PHE A 214 5 4 SHEET 1 A 4 ARG A 17 THR A 21 0 SHEET 2 A 4 LYS A 7 VAL A 11 -1 N LEU A 10 O TYR A 18 SHEET 3 A 4 GLU A 55 LEU A 59 -1 O LEU A 59 N VAL A 9 SHEET 4 A 4 ALA A 47 LYS A 49 -1 N ILE A 48 O PHE A 56 SHEET 1 B 2 ASP A 26 THR A 29 0 SHEET 2 B 2 GLY A 32 LYS A 35 -1 O LEU A 34 N PHE A 27 SHEET 1 C 7 VAL A 147 LYS A 150 0 SHEET 2 C 7 ARG A 120 TYR A 124 1 N SER A 123 O THR A 148 SHEET 3 C 7 PHE A 96 ALA A 100 1 N GLU A 99 O TYR A 124 SHEET 4 C 7 VAL A 163 LEU A 168 1 O ILE A 167 N VAL A 98 SHEET 5 C 7 LEU A 184 THR A 194 1 O VAL A 191 N LEU A 168 SHEET 6 C 7 TYR A 246 ARG A 251 -1 O ALA A 250 N PHE A 190 SHEET 7 C 7 ARG A 218 ILE A 220 -1 N ARG A 218 O PHE A 249 SHEET 1 D 2 GLN A 227 LYS A 230 0 SHEET 2 D 2 CYS A 233 PRO A 236 -1 O ARG A 235 N GLU A 228 SSBOND 1 CYS A 196 CYS A 233 1555 2545 2.21 CISPEP 1 ALA A 100 GLY A 101 0 -10.57 SITE 1 AC1 22 GLN A 75 ILE A 76 VAL A 77 GLY A 101 SITE 2 AC1 22 VAL A 102 GLY A 103 SER A 104 GLY A 105 SITE 3 AC1 22 ALA A 106 LEU A 107 GLU A 125 ILE A 126 SITE 4 AC1 22 ARG A 127 PHE A 130 LYS A 152 ASP A 153 SITE 5 AC1 22 ILE A 154 TYR A 155 ASP A 169 HOH A 320 SITE 6 AC1 22 HOH A 391 HOH A 495 SITE 1 AC2 8 LYS A 16 ARG A 17 LYS A 69 HOH A 296 SITE 2 AC2 8 HOH A 299 HOH A 370 HOH A 574 HOH A 603 SITE 1 AC3 3 LYS A 49 ARG A 127 HOH A 497 SITE 1 AC4 5 PRO A 13 ARG A 14 LEU A 31 HIS A 54 SITE 2 AC4 5 HOH A 547 SITE 1 AC5 2 ARG A 42 HOH A 369 SITE 1 AC6 6 MET A 215 LYS A 216 PHE A 249 ALA A 250 SITE 2 AC6 6 ARG A 251 HOH A 444 SITE 1 AC7 4 HIS A 78 ARG A 218 HOH A 445 HOH A 513 SITE 1 AC8 6 LEU A 67 ASP A 68 PRO A 79 ALA A 87 SITE 2 AC8 6 HOH A 414 HOH A 516 SITE 1 AC9 6 ILE A 63 VAL A 86 GLY A 90 ILE A 91 SITE 2 AC9 6 PHE A 110 ASN A 113 SITE 1 BC1 6 ALA A 131 LYS A 132 TRP A 135 LEU A 151 SITE 2 BC1 6 HOH A 422 HOH A 559 SITE 1 BC2 7 VAL A 77 PRO A 79 ALA A 82 ALA A 106 SITE 2 BC2 7 LEU A 107 PHE A 110 HOH A 569 SITE 1 BC3 5 ARG A 60 PRO A 186 HOH A 283 HOH A 303 SITE 2 BC3 5 HOH A 430 CRYST1 86.550 89.260 110.320 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011554 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011203 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009065 0.00000