PDB Short entry for 3MDE HEADER OXIDOREDUCTASE 13-JUL-94 3MDE TITLE CRYSTAL STRUCTURES OF MEDIUM CHAIN ACYL-COA DEHYDROGENASE FROM PIG TITLE 2 LIVER MITOCHONDRIA WITH AND WITHOUT SUBSTRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDIUM CHAIN ACYL-COA DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.99.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823 KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.-J.P.KIM,M.WANG,R.PASCHKE REVDAT 5 29-NOV-17 3MDE 1 HELIX REVDAT 4 13-JUL-11 3MDE 1 VERSN REVDAT 3 24-FEB-09 3MDE 1 VERSN REVDAT 2 01-APR-03 3MDE 1 JRNL REVDAT 1 30-SEP-94 3MDE 0 JRNL AUTH J.J.KIM,M.WANG,R.PASCHKE JRNL TITL CRYSTAL STRUCTURES OF MEDIUM-CHAIN ACYL-COA DEHYDROGENASE JRNL TITL 2 FROM PIG LIVER MITOCHONDRIA WITH AND WITHOUT SUBSTRATE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 90 7523 1993 JRNL REFN ISSN 0027-8424 JRNL PMID 8356049 JRNL DOI 10.1073/PNAS.90.16.7523 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.-J.P.KIM,J.WU REMARK 1 TITL STRUCTURE OF THE MEDIUM-CHAIN ACYL-COA DEHYDROGENASE FROM REMARK 1 TITL 2 PIG LIVER MITOCHONDRIA AT 3-ANGSTROMS RESOLUTION REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 85 6677 1988 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : GPRLSA REMARK 3 AUTHORS : FUREY REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 36626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5964 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 220 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.009 ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179054. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.66000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.66000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 64.39000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.62500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 64.39000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.62500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.66000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 64.39000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.62500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.66000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 64.39000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 68.62500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 29300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -125.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3B CO8 A 400 O HOH A 986 1.45 REMARK 500 C3B CO8 A 400 O HOH A 986 1.78 REMARK 500 O2B CO8 A 400 O HOH A 986 1.90 REMARK 500 O7A CO8 A 400 O HOH A 986 1.96 REMARK 500 P3B CO8 A 400 O HOH A 986 2.07 REMARK 500 C2B CO8 A 400 O HOH A 986 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 22 C PHE A 23 N 0.184 REMARK 500 ILE A 147 C LYS A 148 N 0.230 REMARK 500 GLY A 377 C THR A 378 N -0.144 REMARK 500 GLY B 46 C GLU B 47 N 0.211 REMARK 500 ILE B 374 C TYR B 375 N 0.158 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LYS A 148 C - N - CA ANGL. DEV. = -15.1 DEGREES REMARK 500 ARG A 223 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 223 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 256 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 367 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 32 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 218 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 256 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 269 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 383 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 128 46.50 -71.06 REMARK 500 VAL B 135 -58.36 -122.18 REMARK 500 TRP B 166 45.26 70.65 REMARK 500 GLU B 376 31.15 74.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 269 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PHE A 23 10.94 REMARK 500 GLU A 47 -11.92 REMARK 500 THR A 149 16.29 REMARK 500 ILE A 198 16.82 REMARK 500 THR A 255 -10.14 REMARK 500 VAL A 264 -14.22 REMARK 500 LEU A 266 -19.64 REMARK 500 VAL A 350 -11.16 REMARK 500 GLU B 47 -18.22 REMARK 500 THR B 84 -12.76 REMARK 500 LEU B 178 11.12 REMARK 500 VAL B 264 -16.00 REMARK 500 LEU B 266 -19.50 REMARK 500 TYR B 375 10.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 STRAND 4 OF SHEET 2 DOES NOT INCLUDE RESIDUE 229. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO8 A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO8 B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 399 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 399 DBREF 3MDE A 11 395 UNP P41367 ACADM_PIG 36 420 DBREF 3MDE B 11 395 UNP P41367 ACADM_PIG 36 420 SEQADV 3MDE GLU A 15 UNP P41367 LYS 40 CONFLICT SEQADV 3MDE PRO A 258 UNP P41367 SER 283 CONFLICT SEQADV 3MDE GLU A 280 UNP P41367 GLY 305 CONFLICT SEQADV 3MDE GLU A 306 UNP P41367 ASP 331 CONFLICT SEQADV 3MDE GLU B 15 UNP P41367 LYS 40 CONFLICT SEQADV 3MDE PRO B 258 UNP P41367 SER 283 CONFLICT SEQADV 3MDE GLU B 280 UNP P41367 GLY 305 CONFLICT SEQADV 3MDE GLU B 306 UNP P41367 ASP 331 CONFLICT SEQRES 1 A 385 GLY PHE SER PHE GLU LEU THR GLU GLN GLN LYS GLU PHE SEQRES 2 A 385 GLN ALA THR ALA ARG LYS PHE ALA ARG GLU GLU ILE ILE SEQRES 3 A 385 PRO VAL ALA ALA GLU TYR ASP ARG THR GLY GLU TYR PRO SEQRES 4 A 385 VAL PRO LEU LEU LYS ARG ALA TRP GLU LEU GLY LEU MET SEQRES 5 A 385 ASN THR HIS ILE PRO GLU SER PHE GLY GLY LEU GLY LEU SEQRES 6 A 385 GLY ILE ILE ASP SER CYS LEU ILE THR GLU GLU LEU ALA SEQRES 7 A 385 TYR GLY CYS THR GLY VAL GLN THR ALA ILE GLU ALA ASN SEQRES 8 A 385 THR LEU GLY GLN VAL PRO LEU ILE ILE GLY GLY ASN TYR SEQRES 9 A 385 GLN GLN GLN LYS LYS TYR LEU GLY ARG MET THR GLU GLU SEQRES 10 A 385 PRO LEU MET CYS ALA TYR CYS VAL THR GLU PRO GLY ALA SEQRES 11 A 385 GLY SER ASP VAL ALA GLY ILE LYS THR LYS ALA GLU LYS SEQRES 12 A 385 LYS GLY ASP GLU TYR ILE ILE ASN GLY GLN LYS MET TRP SEQRES 13 A 385 ILE THR ASN GLY GLY LYS ALA ASN TRP TYR PHE LEU LEU SEQRES 14 A 385 ALA ARG SER ASP PRO ASP PRO LYS ALA PRO ALA SER LYS SEQRES 15 A 385 ALA PHE THR GLY PHE ILE VAL GLU ALA ASP THR PRO GLY SEQRES 16 A 385 VAL GLN ILE GLY ARG LYS GLU ILE ASN MET GLY GLN ARG SEQRES 17 A 385 CYS SER ASP THR ARG GLY ILE VAL PHE GLU ASP VAL ARG SEQRES 18 A 385 VAL PRO LYS GLU ASN VAL LEU THR GLY GLU GLY ALA GLY SEQRES 19 A 385 PHE LYS ILE ALA MET GLY THR PHE ASP LYS THR ARG PRO SEQRES 20 A 385 PRO VAL ALA ALA GLY ALA VAL GLY LEU ALA GLN ARG ALA SEQRES 21 A 385 LEU ASP GLU ALA THR LYS TYR ALA LEU GLU ARG LYS THR SEQRES 22 A 385 PHE GLY LYS LEU LEU ALA GLU HIS GLN GLY ILE SER PHE SEQRES 23 A 385 LEU LEU ALA ASP MET ALA MET LYS VAL GLU LEU ALA ARG SEQRES 24 A 385 LEU SER TYR GLN ARG ALA ALA TRP GLU ILE ASP SER GLY SEQRES 25 A 385 ARG ARG ASN THR TYR TYR ALA SER ILE ALA LYS ALA TYR SEQRES 26 A 385 ALA ALA ASP ILE ALA ASN GLN LEU ALA THR ASP ALA VAL SEQRES 27 A 385 GLN VAL PHE GLY GLY ASN GLY PHE ASN THR GLU TYR PRO SEQRES 28 A 385 VAL GLU LYS LEU MET ARG ASP ALA LYS ILE TYR GLN ILE SEQRES 29 A 385 TYR GLU GLY THR ALA GLN ILE GLN ARG ILE ILE ILE ALA SEQRES 30 A 385 ARG GLU HIS ILE GLY ARG TYR LYS SEQRES 1 B 385 GLY PHE SER PHE GLU LEU THR GLU GLN GLN LYS GLU PHE SEQRES 2 B 385 GLN ALA THR ALA ARG LYS PHE ALA ARG GLU GLU ILE ILE SEQRES 3 B 385 PRO VAL ALA ALA GLU TYR ASP ARG THR GLY GLU TYR PRO SEQRES 4 B 385 VAL PRO LEU LEU LYS ARG ALA TRP GLU LEU GLY LEU MET SEQRES 5 B 385 ASN THR HIS ILE PRO GLU SER PHE GLY GLY LEU GLY LEU SEQRES 6 B 385 GLY ILE ILE ASP SER CYS LEU ILE THR GLU GLU LEU ALA SEQRES 7 B 385 TYR GLY CYS THR GLY VAL GLN THR ALA ILE GLU ALA ASN SEQRES 8 B 385 THR LEU GLY GLN VAL PRO LEU ILE ILE GLY GLY ASN TYR SEQRES 9 B 385 GLN GLN GLN LYS LYS TYR LEU GLY ARG MET THR GLU GLU SEQRES 10 B 385 PRO LEU MET CYS ALA TYR CYS VAL THR GLU PRO GLY ALA SEQRES 11 B 385 GLY SER ASP VAL ALA GLY ILE LYS THR LYS ALA GLU LYS SEQRES 12 B 385 LYS GLY ASP GLU TYR ILE ILE ASN GLY GLN LYS MET TRP SEQRES 13 B 385 ILE THR ASN GLY GLY LYS ALA ASN TRP TYR PHE LEU LEU SEQRES 14 B 385 ALA ARG SER ASP PRO ASP PRO LYS ALA PRO ALA SER LYS SEQRES 15 B 385 ALA PHE THR GLY PHE ILE VAL GLU ALA ASP THR PRO GLY SEQRES 16 B 385 VAL GLN ILE GLY ARG LYS GLU ILE ASN MET GLY GLN ARG SEQRES 17 B 385 CYS SER ASP THR ARG GLY ILE VAL PHE GLU ASP VAL ARG SEQRES 18 B 385 VAL PRO LYS GLU ASN VAL LEU THR GLY GLU GLY ALA GLY SEQRES 19 B 385 PHE LYS ILE ALA MET GLY THR PHE ASP LYS THR ARG PRO SEQRES 20 B 385 PRO VAL ALA ALA GLY ALA VAL GLY LEU ALA GLN ARG ALA SEQRES 21 B 385 LEU ASP GLU ALA THR LYS TYR ALA LEU GLU ARG LYS THR SEQRES 22 B 385 PHE GLY LYS LEU LEU ALA GLU HIS GLN GLY ILE SER PHE SEQRES 23 B 385 LEU LEU ALA ASP MET ALA MET LYS VAL GLU LEU ALA ARG SEQRES 24 B 385 LEU SER TYR GLN ARG ALA ALA TRP GLU ILE ASP SER GLY SEQRES 25 B 385 ARG ARG ASN THR TYR TYR ALA SER ILE ALA LYS ALA TYR SEQRES 26 B 385 ALA ALA ASP ILE ALA ASN GLN LEU ALA THR ASP ALA VAL SEQRES 27 B 385 GLN VAL PHE GLY GLY ASN GLY PHE ASN THR GLU TYR PRO SEQRES 28 B 385 VAL GLU LYS LEU MET ARG ASP ALA LYS ILE TYR GLN ILE SEQRES 29 B 385 TYR GLU GLY THR ALA GLN ILE GLN ARG ILE ILE ILE ALA SEQRES 30 B 385 ARG GLU HIS ILE GLY ARG TYR LYS HET CO8 A 400 57 HET FAD A 399 53 HET CO8 B 400 57 HET FAD B 399 53 HETNAM CO8 OCTANOYL-COENZYME A HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 3 CO8 2(C29 H50 N7 O17 P3 S) FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 7 HOH *182(H2 O) HELIX 1 A GLU A 18 PRO A 37 1 20 HELIX 2 B ALA A 40 THR A 45 1 6 HELIX 3 C VAL A 50 GLY A 60 1 11 HELIX 4 D ILE A 77 TYR A 89 1 13 HELIX 5 E THR A 92 LEU A 108 1 17 HELIX 6 F TYR A 114 GLU A 126 1LAST 2 TURNS ARE 3/10 HELIX 13 HELIX 7 G ALA A 243 LEU A 279 1SHARP BEND AT PRO257 & PRO258 37 HELIX 8 H GLN A 292 SER A 321 1 30 HELIX 9 I ASN A 325 PHE A 351 1 27 HELIX 10 J VAL A 362 GLN A 373 1 12 HELIX 11 K ALA A 379 GLY A 392 1 14 HELIX 12 A GLU B 18 PRO B 37 1 20 HELIX 13 B ALA B 40 THR B 45 1 6 HELIX 14 C VAL B 50 GLY B 60 1 11 HELIX 15 D ILE B 77 TYR B 89 1 13 HELIX 16 E THR B 92 LEU B 108 1 17 HELIX 17 F TYR B 114 GLU B 126 1LAST 2 TURNS ARE 3/10 HELIX 13 HELIX 18 G ALA B 243 LEU B 279 1SHARP BEND AT PRO257 & PRO258 37 HELIX 19 H GLN B 292 SER B 321 1 30 HELIX 20 I ASN B 325 PHE B 351 1 27 HELIX 21 J VAL B 362 GLN B 373 1 12 HELIX 22 K ALA B 379 GLY B 392 1 14 SHEET 1 1 3 LEU A 129 VAL A 135 0 SHEET 2 1 3 TRP A 175 ARG A 181 1 SHEET 3 1 3 PHE A 194 GLU A 200 -1 SHEET 1 2 4 THR A 149 LYS A 154 0 SHEET 2 2 4 GLU A 157 MET A 165 -1 SHEET 3 2 4 GLY A 205 GLU A 212 1 SHEET 4 2 4 THR A 222 PRO A 233 -1 SHEET 1 3 3 LEU B 129 VAL B 135 0 SHEET 2 3 3 TRP B 175 ARG B 181 1 SHEET 3 3 3 PHE B 194 GLU B 200 -1 SHEET 1 4 4 THR B 149 LYS B 154 0 SHEET 2 4 4 GLU B 157 MET B 165 -1 SHEET 3 4 4 GLY B 205 GLU B 212 1 SHEET 4 4 4 THR B 222 PRO B 233 -1 SITE 1 AC1 26 THR A 96 GLU A 99 LEU A 103 GLY A 141 SITE 2 AC1 26 SER A 142 VAL A 144 ALA A 145 SER A 191 SITE 3 AC1 26 PHE A 245 MET A 249 PHE A 252 ASP A 253 SITE 4 AC1 26 ARG A 256 ARG A 324 THR A 326 TYR A 375 SITE 5 AC1 26 GLU A 376 GLY A 377 ILE A 381 FAD A 399 SITE 6 AC1 26 HOH A 803 HOH A 845 HOH A 860 HOH A 868 SITE 7 AC1 26 HOH A 888 HOH A 986 SITE 1 AC2 17 THR B 96 GLU B 99 LEU B 103 GLY B 141 SITE 2 AC2 17 SER B 142 VAL B 144 SER B 191 PHE B 245 SITE 3 AC2 17 MET B 249 PHE B 252 THR B 326 TYR B 375 SITE 4 AC2 17 GLU B 376 GLY B 377 FAD B 399 HOH B 946 SITE 5 AC2 17 HOH B 960 SITE 1 AC3 28 TYR A 133 VAL A 135 THR A 136 GLY A 141 SITE 2 AC3 28 SER A 142 TRP A 166 ILE A 167 THR A 168 SITE 3 AC3 28 ILE A 371 ILE A 374 THR A 378 GLN A 380 SITE 4 AC3 28 CO8 A 400 HOH A 802 HOH A 804 HOH A 805 SITE 5 AC3 28 HOH A 846 HOH A 850 ARG B 281 THR B 283 SITE 6 AC3 28 PHE B 284 LEU B 288 GLN B 292 ILE B 294 SITE 7 AC3 28 GLN B 349 VAL B 350 GLY B 353 HOH B 806 SITE 1 AC4 27 ARG A 281 THR A 283 PHE A 284 LEU A 288 SITE 2 AC4 27 HIS A 291 GLN A 292 GLN A 349 VAL A 350 SITE 3 AC4 27 GLY A 353 TYR B 133 VAL B 135 THR B 136 SITE 4 AC4 27 GLY B 141 SER B 142 TRP B 166 THR B 168 SITE 5 AC4 27 ILE B 371 ILE B 374 TYR B 375 THR B 378 SITE 6 AC4 27 GLN B 380 CO8 B 400 HOH B 901 HOH B 903 SITE 7 AC4 27 HOH B 904 HOH B 925 HOH B 926 CRYST1 128.780 137.250 105.320 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007765 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007286 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009495 0.00000