PDB Short entry for 3MTX HEADER IMMUNE SYSTEM 01-MAY-10 3MTX TITLE CRYSTAL STRUCTURE OF CHICKEN MD-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MD-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: LY-86, LYMPHOCYTE ANTIGEN 86; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: LY86, MD-1, MD1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HI-5 INSECT CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PACGP67 KEYWDS MD-1, LY86, RP105 ASSOCIATED PROTEIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.I.YOON,M.HONG,G.W.HAN,I.A.WILSON REVDAT 2 14-JUL-10 3MTX 1 JRNL REVDAT 1 09-JUN-10 3MTX 0 JRNL AUTH S.I.YOON,M.HONG,G.W.HAN,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF SOLUBLE MD-1 AND ITS INTERACTION WITH JRNL TITL 2 LIPID IVA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 10990 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20534476 JRNL DOI 10.1073/PNAS.1004153107 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0070 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2153 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 146 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.34000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.312 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2317 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1624 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3123 ; 1.723 ; 2.008 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3786 ; 0.916 ; 3.016 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 6.610 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;31.110 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 375 ;13.266 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;10.480 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 354 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2448 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 435 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1387 ; 0.886 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 562 ; 0.225 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2244 ; 1.679 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 930 ; 2.420 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 878 ; 3.965 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 802 ; 0.04 ; 0.05 REMARK 3 LOOSE POSITIONAL 1 A (A): 944 ; 0.04 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 802 ; 0.12 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 944 ; 0.13 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 109 ; 0.43 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 109 ; 0.25 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 21 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3780 33.3460 21.5710 REMARK 3 T TENSOR REMARK 3 T11: 0.0159 T22: 0.5087 REMARK 3 T33: 0.2007 T12: -0.0171 REMARK 3 T13: 0.0044 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 3.1501 L22: 1.9341 REMARK 3 L33: 2.5730 L12: -0.3810 REMARK 3 L13: -0.3873 L23: 1.1970 REMARK 3 S TENSOR REMARK 3 S11: 0.0765 S12: 0.1117 S13: -0.0612 REMARK 3 S21: 0.0005 S22: -0.1244 S23: 0.0079 REMARK 3 S31: -0.1019 S32: -0.2710 S33: 0.0479 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 110 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5190 32.5020 25.2220 REMARK 3 T TENSOR REMARK 3 T11: 0.0718 T22: 0.4933 REMARK 3 T33: 0.3066 T12: -0.0271 REMARK 3 T13: -0.0061 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 3.3990 L22: 3.7946 REMARK 3 L33: 11.9989 L12: 1.7343 REMARK 3 L13: -0.3644 L23: -0.8190 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: 0.2865 S13: -0.0746 REMARK 3 S21: 0.1752 S22: 0.2543 S23: -0.3486 REMARK 3 S31: -0.7914 S32: 0.2686 S33: -0.1636 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 111 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): 17.6300 36.8750 22.2000 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.4403 REMARK 3 T33: 0.1920 T12: -0.0084 REMARK 3 T13: 0.0371 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 4.0954 L22: 2.6053 REMARK 3 L33: 3.6825 L12: -0.2251 REMARK 3 L13: 1.4621 L23: 0.6348 REMARK 3 S TENSOR REMARK 3 S11: 0.0483 S12: 0.3628 S13: 0.0677 REMARK 3 S21: -0.1710 S22: -0.0544 S23: -0.1268 REMARK 3 S31: -0.3759 S32: -0.0620 S33: 0.0061 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 158 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5860 30.1940 18.3430 REMARK 3 T TENSOR REMARK 3 T11: 0.0379 T22: 0.4491 REMARK 3 T33: 0.1602 T12: -0.0181 REMARK 3 T13: 0.0536 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 10.1323 L22: 5.1584 REMARK 3 L33: 3.9237 L12: -2.3860 REMARK 3 L13: 2.0454 L23: -0.6746 REMARK 3 S TENSOR REMARK 3 S11: 0.1747 S12: 0.4116 S13: -0.0282 REMARK 3 S21: -0.1919 S22: -0.1430 S23: -0.0047 REMARK 3 S31: -0.1359 S32: -0.2527 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6900 32.9560 -8.6200 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.5421 REMARK 3 T33: 0.1780 T12: 0.0189 REMARK 3 T13: -0.0075 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 3.5613 L22: 1.9737 REMARK 3 L33: 2.2123 L12: 0.4822 REMARK 3 L13: -0.8243 L23: -1.2113 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: -0.2331 S13: -0.0168 REMARK 3 S21: 0.0140 S22: -0.2050 S23: 0.0345 REMARK 3 S31: -0.1262 S32: 0.1598 S33: 0.0870 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 110 REMARK 3 ORIGIN FOR THE GROUP (A): 9.4660 32.2150 -12.2810 REMARK 3 T TENSOR REMARK 3 T11: 0.1017 T22: 0.6364 REMARK 3 T33: 0.2827 T12: 0.0226 REMARK 3 T13: -0.0196 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 2.2578 L22: 4.5399 REMARK 3 L33: 11.2282 L12: -2.4176 REMARK 3 L13: -0.7269 L23: 1.1069 REMARK 3 S TENSOR REMARK 3 S11: -0.0032 S12: -0.4794 S13: 0.1281 REMARK 3 S21: -0.1907 S22: 0.2623 S23: 0.3190 REMARK 3 S31: -0.8321 S32: 0.0652 S33: -0.2591 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 111 B 132 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3580 36.6350 -9.3030 REMARK 3 T TENSOR REMARK 3 T11: 0.1016 T22: 0.4802 REMARK 3 T33: 0.2211 T12: 0.0311 REMARK 3 T13: 0.0159 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 3.9364 L22: 1.8489 REMARK 3 L33: 3.3656 L12: 1.3409 REMARK 3 L13: 0.3450 L23: -0.3959 REMARK 3 S TENSOR REMARK 3 S11: 0.3105 S12: -0.4187 S13: 0.1517 REMARK 3 S21: 0.2349 S22: -0.1507 S23: 0.1172 REMARK 3 S31: -0.4119 S32: 0.0796 S33: -0.1598 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 133 B 158 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3170 29.8440 -5.3630 REMARK 3 T TENSOR REMARK 3 T11: 0.0464 T22: 0.5248 REMARK 3 T33: 0.1358 T12: 0.0198 REMARK 3 T13: 0.0311 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 9.8664 L22: 5.4168 REMARK 3 L33: 5.0445 L12: 2.6521 REMARK 3 L13: 2.0466 L23: 1.7071 REMARK 3 S TENSOR REMARK 3 S11: 0.3015 S12: -0.4998 S13: 0.0323 REMARK 3 S21: 0.1992 S22: -0.3271 S23: 0.0843 REMARK 3 S31: 0.0057 S32: 0.1421 S33: 0.0256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A PEG4000 FRAGMENT (PGE) FROM REMARK 3 CRYSTALLIZATION SOLUTION AND A GLYCEROL MOLECULE (GOL) FROM CRYO REMARK 3 SOLUTION ARE MODELED. REMARK 4 REMARK 4 3MTX COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-10. REMARK 100 THE RCSB ID CODE IS RCSB058990. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21878 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 100 MM HEPES PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.05900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.96800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.24700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.96800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.05900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.24700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE LIGAND DENOTED AS PGT HAS BEEN CO-PURIFIED ALONG WITH THE REMARK 400 PROTEIN AND ITS EXACT IDENTITY IS NOT KNOWN. PGT REPRESENTS A CLOSE REMARK 400 MATCH REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 17 REMARK 465 ASP A 18 REMARK 465 PRO A 19 REMARK 465 GLY A 20 REMARK 465 ASP A 159 REMARK 465 TYR A 160 REMARK 465 SER A 161 REMARK 465 ALA A 162 REMARK 465 SER A 163 REMARK 465 LEU A 164 REMARK 465 VAL A 165 REMARK 465 PRO A 166 REMARK 465 ARG A 167 REMARK 465 ALA B 17 REMARK 465 ASP B 18 REMARK 465 ASP B 159 REMARK 465 TYR B 160 REMARK 465 SER B 161 REMARK 465 ALA B 162 REMARK 465 SER B 163 REMARK 465 LEU B 164 REMARK 465 VAL B 165 REMARK 465 PRO B 166 REMARK 465 ARG B 167 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 59 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 74 CD CE NZ REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 ILE A 128 CG1 CG2 CD1 REMARK 470 GLN A 130 CG CD OE1 NE2 REMARK 470 ARG A 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 144 CD NE CZ NH1 NH2 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 HIS B 59 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 74 CD CE NZ REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 ILE B 128 CG1 CG2 CD1 REMARK 470 GLN B 130 CG CD OE1 NE2 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 144 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 59 -5.67 67.65 REMARK 500 LYS A 126 -72.98 -68.17 REMARK 500 ARG A 131 -155.17 72.62 REMARK 500 ASN A 141 -167.33 -110.76 REMARK 500 ARG A 144 13.67 59.34 REMARK 500 HIS B 59 -7.80 64.90 REMARK 500 LYS B 126 -75.24 -68.91 REMARK 500 ARG B 131 -152.97 72.50 REMARK 500 ARG B 144 15.04 59.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGT A 300 REMARK 610 PGT B 300 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGT A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGT B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MU3 RELATED DB: PDB REMARK 900 IMMUNE REGULATION PROTEIN 2 DBREF 3MTX A 21 160 UNP Q90890 LY86_CHICK 21 160 DBREF 3MTX B 21 160 UNP Q90890 LY86_CHICK 21 160 SEQADV 3MTX ALA A 17 UNP Q90890 EXPRESSION TAG SEQADV 3MTX ASP A 18 UNP Q90890 EXPRESSION TAG SEQADV 3MTX PRO A 19 UNP Q90890 EXPRESSION TAG SEQADV 3MTX GLY A 20 UNP Q90890 EXPRESSION TAG SEQADV 3MTX SER A 161 UNP Q90890 EXPRESSION TAG SEQADV 3MTX ALA A 162 UNP Q90890 EXPRESSION TAG SEQADV 3MTX SER A 163 UNP Q90890 EXPRESSION TAG SEQADV 3MTX LEU A 164 UNP Q90890 EXPRESSION TAG SEQADV 3MTX VAL A 165 UNP Q90890 EXPRESSION TAG SEQADV 3MTX PRO A 166 UNP Q90890 EXPRESSION TAG SEQADV 3MTX ARG A 167 UNP Q90890 EXPRESSION TAG SEQADV 3MTX ALA B 17 UNP Q90890 EXPRESSION TAG SEQADV 3MTX ASP B 18 UNP Q90890 EXPRESSION TAG SEQADV 3MTX PRO B 19 UNP Q90890 EXPRESSION TAG SEQADV 3MTX GLY B 20 UNP Q90890 EXPRESSION TAG SEQADV 3MTX SER B 161 UNP Q90890 EXPRESSION TAG SEQADV 3MTX ALA B 162 UNP Q90890 EXPRESSION TAG SEQADV 3MTX SER B 163 UNP Q90890 EXPRESSION TAG SEQADV 3MTX LEU B 164 UNP Q90890 EXPRESSION TAG SEQADV 3MTX VAL B 165 UNP Q90890 EXPRESSION TAG SEQADV 3MTX PRO B 166 UNP Q90890 EXPRESSION TAG SEQADV 3MTX ARG B 167 UNP Q90890 EXPRESSION TAG SEQRES 1 A 151 ALA ASP PRO GLY GLU TRP PRO THR HIS THR VAL CYS LYS SEQRES 2 A 151 GLU GLU ASN LEU GLU ILE TYR TYR LYS SER CYS ASP PRO SEQRES 3 A 151 GLN GLN ASP PHE ALA PHE SER ILE ASP ARG CYS SER ASP SEQRES 4 A 151 VAL THR THR HIS THR PHE ASP ILE ARG ALA ALA MET VAL SEQRES 5 A 151 LEU ARG GLN SER ILE LYS GLU LEU TYR ALA LYS VAL ASP SEQRES 6 A 151 LEU ILE ILE ASN GLY LYS THR VAL LEU SER TYR SER GLU SEQRES 7 A 151 THR LEU CYS GLY PRO GLY LEU SER LYS LEU ILE PHE CYS SEQRES 8 A 151 GLY LYS LYS LYS GLY GLU HIS LEU TYR TYR GLU GLY PRO SEQRES 9 A 151 ILE THR LEU GLY ILE LYS GLU ILE PRO GLN ARG ASP TYR SEQRES 10 A 151 THR ILE THR ALA ARG LEU THR ASN GLU ASP ARG ALA THR SEQRES 11 A 151 VAL ALA CYS ALA ASP PHE THR VAL LYS ASN TYR LEU ASP SEQRES 12 A 151 TYR SER ALA SER LEU VAL PRO ARG SEQRES 1 B 151 ALA ASP PRO GLY GLU TRP PRO THR HIS THR VAL CYS LYS SEQRES 2 B 151 GLU GLU ASN LEU GLU ILE TYR TYR LYS SER CYS ASP PRO SEQRES 3 B 151 GLN GLN ASP PHE ALA PHE SER ILE ASP ARG CYS SER ASP SEQRES 4 B 151 VAL THR THR HIS THR PHE ASP ILE ARG ALA ALA MET VAL SEQRES 5 B 151 LEU ARG GLN SER ILE LYS GLU LEU TYR ALA LYS VAL ASP SEQRES 6 B 151 LEU ILE ILE ASN GLY LYS THR VAL LEU SER TYR SER GLU SEQRES 7 B 151 THR LEU CYS GLY PRO GLY LEU SER LYS LEU ILE PHE CYS SEQRES 8 B 151 GLY LYS LYS LYS GLY GLU HIS LEU TYR TYR GLU GLY PRO SEQRES 9 B 151 ILE THR LEU GLY ILE LYS GLU ILE PRO GLN ARG ASP TYR SEQRES 10 B 151 THR ILE THR ALA ARG LEU THR ASN GLU ASP ARG ALA THR SEQRES 11 B 151 VAL ALA CYS ALA ASP PHE THR VAL LYS ASN TYR LEU ASP SEQRES 12 B 151 TYR SER ALA SER LEU VAL PRO ARG HET PGT A 300 47 HET PGE A 1 10 HET PGT B 300 47 HET GOL B 1 6 HETNAM PGT (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) HETNAM 2 PGT PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE HETNAM PGE TRIETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN PGT PHOSPHATIDYLGLYCEROL; 1-PALMITOYL-2-OLEOYL-SN-GLYCERO- HETSYN 2 PGT 3-[PHOSPHO-RAC-(1-GLYCEROL)](SODIUM SALT) FORMUL 3 PGT 2(C40 H79 O10 P) FORMUL 4 PGE C6 H14 O4 FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *146(H2 O) HELIX 1 1 ARG A 52 THR A 58 5 7 HELIX 2 2 ARG B 52 THR B 58 5 7 SHEET 1 A12 HIS A 25 GLU A 30 0 SHEET 2 A12 LEU A 33 SER A 39 -1 O TYR A 37 N HIS A 25 SHEET 3 A12 THR A 146 ASN A 156 -1 O LYS A 155 N GLU A 34 SHEET 4 A12 ARG A 131 ASN A 141 -1 N ILE A 135 O PHE A 152 SHEET 5 A12 LEU A 76 ILE A 84 -1 N ILE A 83 O THR A 134 SHEET 6 A12 LYS A 87 CYS A 97 -1 O GLU A 94 N ALA A 78 SHEET 7 A12 LYS B 87 CYS B 97 -1 O SER B 91 N SER A 91 SHEET 8 A12 LEU B 76 ILE B 84 -1 N LEU B 82 O LEU B 90 SHEET 9 A12 ARG B 131 ASN B 141 -1 O THR B 134 N ILE B 83 SHEET 10 A12 THR B 146 ASN B 156 -1 O PHE B 152 N ILE B 135 SHEET 11 A12 LEU B 33 SER B 39 -1 N GLU B 34 O LYS B 155 SHEET 12 A12 HIS B 25 GLU B 30 -1 N VAL B 27 O ILE B 35 SHEET 1 B 3 ALA A 47 ILE A 50 0 SHEET 2 B 3 THR A 60 VAL A 68 -1 O ARG A 64 N SER A 49 SHEET 3 B 3 HIS A 114 THR A 122 -1 O LEU A 115 N MET A 67 SHEET 1 C 3 ALA B 47 ILE B 50 0 SHEET 2 C 3 THR B 60 VAL B 68 -1 O ALA B 66 N ALA B 47 SHEET 3 C 3 HIS B 114 THR B 122 -1 O LEU B 115 N MET B 67 SSBOND 1 CYS A 28 CYS A 53 1555 1555 2.03 SSBOND 2 CYS A 40 CYS A 149 1555 1555 2.07 SSBOND 3 CYS A 97 CYS A 107 1555 1555 2.04 SSBOND 4 CYS B 28 CYS B 53 1555 1555 2.03 SSBOND 5 CYS B 40 CYS B 149 1555 1555 2.08 SSBOND 6 CYS B 97 CYS B 107 1555 1555 2.07 SITE 1 AC1 11 VAL A 56 PHE A 61 ALA A 65 MET A 67 SITE 2 AC1 11 TYR A 92 LYS A 103 LEU A 115 TYR A 117 SITE 3 AC1 11 ILE A 121 ILE A 135 PHE A 152 SITE 1 AC2 6 SER A 91 TYR A 92 SER A 93 SER B 91 SITE 2 AC2 6 TYR B 92 SER B 93 SITE 1 AC3 6 MET B 67 LEU B 115 ILE B 121 THR B 122 SITE 2 AC3 6 ILE B 135 PHE B 152 SITE 1 AC4 8 THR A 26 PHE A 48 SER A 49 HOH A 169 SITE 2 AC4 8 PHE B 106 HIS B 114 LEU B 115 TYR B 116 CRYST1 40.118 76.494 101.936 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009810 0.00000