PDB Short entry for 3MY5 HEADER TRANSFERASE/PROTEIN BINDING/INHIBITOR 09-MAY-10 3MY5 TITLE CDK2/CYCLINA IN COMPLEX WITH DRB COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN KINASE 2; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: P33 PROTEIN KINASE; COMPND 5 EC: 2.7.11.22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIN-A2; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: UNP RESIDUES 169-430; COMPND 11 SYNONYM: CYCLIN-A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CDK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 11 ORGANISM_COMMON: BOVINE; SOURCE 12 ORGANISM_TAXID: 9913; SOURCE 13 GENE: CCNA2, CCNA; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CDK, CYCLIN, INHIBITOR, DRB, TRANSFERASE-PROTEIN BINDING-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.BAUMLI,L.N.JOHNSON REVDAT 2 29-JUN-11 3MY5 1 JRNL HEADER REVDAT 1 29-SEP-10 3MY5 0 JRNL AUTH S.BAUMLI,J.A.ENDICOTT,L.N.JOHNSON JRNL TITL HALOGEN BONDS FORM THE BASIS FOR SELECTIVE P-TEFB INHIBITION JRNL TITL 2 BY DRB JRNL REF CHEM.BIOL. V. 17 931 2010 JRNL REFN ISSN 1074-5521 JRNL PMID 20851342 JRNL DOI 10.1016/J.CHEMBIOL.2010.07.012 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.130 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 83313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 8367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.5502 - 6.5224 0.99 5224 272 0.1754 0.1726 REMARK 3 2 6.5224 - 5.1780 0.97 5100 303 0.1467 0.1771 REMARK 3 3 5.1780 - 4.5237 0.99 5239 264 0.1300 0.1902 REMARK 3 4 4.5237 - 4.1102 1.00 5235 316 0.1215 0.1545 REMARK 3 5 4.1102 - 3.8157 1.00 5321 263 0.1347 0.1719 REMARK 3 6 3.8157 - 3.5907 1.00 5273 306 0.1416 0.1760 REMARK 3 7 3.5907 - 3.4109 1.00 5245 302 0.1490 0.2122 REMARK 3 8 3.4109 - 3.2625 1.00 5262 268 0.1582 0.1944 REMARK 3 9 3.2625 - 3.1369 1.00 5348 237 0.1701 0.1990 REMARK 3 10 3.1369 - 3.0286 1.00 5308 261 0.1884 0.2255 REMARK 3 11 3.0286 - 2.9339 1.00 5264 300 0.1937 0.2287 REMARK 3 12 2.9339 - 2.8501 1.00 5241 287 0.2102 0.2777 REMARK 3 13 2.8501 - 2.7750 1.00 5323 261 0.1994 0.2614 REMARK 3 14 2.7750 - 2.7073 1.00 5322 257 0.1961 0.2448 REMARK 3 15 2.7073 - 2.6458 1.00 5217 317 0.2025 0.2638 REMARK 3 16 2.6458 - 2.5895 1.00 5342 276 0.1942 0.2525 REMARK 3 17 2.5895 - 2.5377 1.00 5239 303 0.1880 0.2221 REMARK 3 18 2.5377 - 2.4898 1.00 5255 282 0.1967 0.2617 REMARK 3 19 2.4898 - 2.4453 1.00 5347 264 0.2085 0.2666 REMARK 3 20 2.4453 - 2.4039 1.00 5194 330 0.2096 0.2489 REMARK 3 21 2.4039 - 2.3651 1.00 5336 270 0.2105 0.2533 REMARK 3 22 2.3651 - 2.3287 1.00 5267 267 0.2070 0.2408 REMARK 3 23 2.3287 - 2.2945 1.00 5276 313 0.2101 0.2353 REMARK 3 24 2.2945 - 2.2621 1.00 5275 285 0.2201 0.2538 REMARK 3 25 2.2621 - 2.2316 1.00 5327 248 0.2347 0.3022 REMARK 3 26 2.2316 - 2.2026 1.00 5307 224 0.2389 0.2490 REMARK 3 27 2.2026 - 2.1751 1.00 5300 270 0.2452 0.2521 REMARK 3 28 2.1751 - 2.1489 1.00 5321 272 0.2431 0.2911 REMARK 3 29 2.1489 - 2.1239 1.00 5246 268 0.2518 0.2856 REMARK 3 30 2.1239 - 2.1000 1.00 5306 281 0.2664 0.2995 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 48.03 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.11630 REMARK 3 B22 (A**2) : 0.04160 REMARK 3 B33 (A**2) : 1.07470 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 9112 REMARK 3 ANGLE : 1.060 12394 REMARK 3 CHIRALITY : 0.070 1418 REMARK 3 PLANARITY : 0.005 1556 REMARK 3 DIHEDRAL : 14.159 3413 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: all REMARK 3 ORIGIN FOR THE GROUP (A): -28.4355 8.0466 -17.3242 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0435 REMARK 3 T33: 0.0421 T12: 0.0164 REMARK 3 T13: 0.0169 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2830 L22: 0.2933 REMARK 3 L33: 0.3163 L12: 0.1151 REMARK 3 L13: 0.1112 L23: 0.2140 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0766 S13: 0.0345 REMARK 3 S21: -0.0163 S22: -0.0500 S23: 0.0038 REMARK 3 S31: 0.0487 S32: -0.0024 S33: 0.0386 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MY5 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-10. REMARK 100 THE RCSB ID CODE IS RCSB059140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : SINGLE SILICON (111) REMARK 200 MONOCHROMATOR AND TOROIDAL REMARK 200 FOCUSING MIRROR REMARK 200 OPTICS : SINGLE SILICON (111) REMARK 200 MONOCHROMATOR AND TOROIDAL REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87151 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 59.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.59500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3BHT, OMITTING THE INHIBITOR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1M AMMONIUM SULPHATE, 100MM HEPES PH REMARK 280 7.0, 5MM DTT, SATURATED DRB, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.13000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.20500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.20500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.13000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 67.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 38 REMARK 465 THR A 39 REMARK 465 GLU A 40 REMARK 465 GLY C -1 REMARK 465 THR C 221 REMARK 465 PRO C 222 REMARK 465 ASP C 223 REMARK 465 GLU C 224 REMARK 465 VAL C 225 REMARK 465 VAL C 226 REMARK 465 TRP C 227 REMARK 465 PRO C 228 REMARK 465 GLY C 229 REMARK 465 VAL C 230 REMARK 465 THR C 231 REMARK 465 SER C 232 REMARK 465 MET C 233 REMARK 465 PRO C 234 REMARK 465 ASP C 235 REMARK 465 TYR C 236 REMARK 465 LYS C 237 REMARK 465 PRO C 238 REMARK 465 SER C 239 REMARK 465 PHE C 240 REMARK 465 PRO C 241 REMARK 465 LYS C 242 REMARK 465 TRP C 243 REMARK 465 ALA C 244 REMARK 465 ARG C 245 REMARK 465 GLN C 246 REMARK 465 ASP C 247 REMARK 465 PHE C 248 REMARK 465 SER C 249 REMARK 465 LYS C 250 REMARK 465 ARG C 297 REMARK 465 LEU C 298 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 469 O HOH A 471 2.18 REMARK 500 OD1 ASP A 210 O HOH A 470 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 71 72.00 -119.47 REMARK 500 THR A 72 -178.03 -55.12 REMARK 500 LEU A 96 -12.84 68.47 REMARK 500 ASP A 127 41.69 -152.10 REMARK 500 ASP A 145 76.52 53.60 REMARK 500 VAL A 164 127.46 76.12 REMARK 500 SER A 181 -155.41 -144.05 REMARK 500 VAL B 175 64.58 31.07 REMARK 500 TRP B 372 111.66 -33.04 REMARK 500 THR C 14 -13.51 -152.60 REMARK 500 THR C 41 -74.92 -136.74 REMARK 500 ASP C 127 44.25 -155.19 REMARK 500 ASP C 145 71.36 49.57 REMARK 500 VAL C 164 122.72 70.99 REMARK 500 SER C 181 -159.66 -144.58 REMARK 500 PRO C 254 0.36 -65.13 REMARK 500 THR C 290 -162.05 -126.21 REMARK 500 ASP D 283 -128.82 55.28 REMARK 500 TRP D 372 107.22 -51.00 REMARK 500 LYS D 417 -36.77 -39.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 437 DISTANCE = 6.17 ANGSTROMS REMARK 525 HOH C 535 DISTANCE = 5.04 ANGSTROMS REMARK 525 HOH D 475 DISTANCE = 5.22 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RFZ A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGM B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RFZ C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SGM D 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MY1 RELATED DB: PDB DBREF 3MY5 A 1 298 UNP P24941 CDK2_HUMAN 1 298 DBREF 3MY5 B 171 432 UNP P30274 CCNA2_BOVIN 169 430 DBREF 3MY5 C 1 298 UNP P24941 CDK2_HUMAN 1 298 DBREF 3MY5 D 171 432 UNP P30274 CCNA2_BOVIN 169 430 SEQADV 3MY5 GLY A -1 UNP P24941 EXPRESSION TAG SEQADV 3MY5 SER A 0 UNP P24941 EXPRESSION TAG SEQADV 3MY5 GLY C -1 UNP P24941 EXPRESSION TAG SEQADV 3MY5 SER C 0 UNP P24941 EXPRESSION TAG SEQRES 1 A 300 GLY SER MET GLU ASN PHE GLN LYS VAL GLU LYS ILE GLY SEQRES 2 A 300 GLU GLY THR TYR GLY VAL VAL TYR LYS ALA ARG ASN LYS SEQRES 3 A 300 LEU THR GLY GLU VAL VAL ALA LEU LYS LYS ILE ARG LEU SEQRES 4 A 300 ASP THR GLU THR GLU GLY VAL PRO SER THR ALA ILE ARG SEQRES 5 A 300 GLU ILE SER LEU LEU LYS GLU LEU ASN HIS PRO ASN ILE SEQRES 6 A 300 VAL LYS LEU LEU ASP VAL ILE HIS THR GLU ASN LYS LEU SEQRES 7 A 300 TYR LEU VAL PHE GLU PHE LEU HIS GLN ASP LEU LYS LYS SEQRES 8 A 300 PHE MET ASP ALA SER ALA LEU THR GLY ILE PRO LEU PRO SEQRES 9 A 300 LEU ILE LYS SER TYR LEU PHE GLN LEU LEU GLN GLY LEU SEQRES 10 A 300 ALA PHE CYS HIS SER HIS ARG VAL LEU HIS ARG ASP LEU SEQRES 11 A 300 LYS PRO GLN ASN LEU LEU ILE ASN THR GLU GLY ALA ILE SEQRES 12 A 300 LYS LEU ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL SEQRES 13 A 300 PRO VAL ARG THR TYR TPO HIS GLU VAL VAL THR LEU TRP SEQRES 14 A 300 TYR ARG ALA PRO GLU ILE LEU LEU GLY CYS LYS TYR TYR SEQRES 15 A 300 SER THR ALA VAL ASP ILE TRP SER LEU GLY CYS ILE PHE SEQRES 16 A 300 ALA GLU MET VAL THR ARG ARG ALA LEU PHE PRO GLY ASP SEQRES 17 A 300 SER GLU ILE ASP GLN LEU PHE ARG ILE PHE ARG THR LEU SEQRES 18 A 300 GLY THR PRO ASP GLU VAL VAL TRP PRO GLY VAL THR SER SEQRES 19 A 300 MET PRO ASP TYR LYS PRO SER PHE PRO LYS TRP ALA ARG SEQRES 20 A 300 GLN ASP PHE SER LYS VAL VAL PRO PRO LEU ASP GLU ASP SEQRES 21 A 300 GLY ARG SER LEU LEU SER GLN MET LEU HIS TYR ASP PRO SEQRES 22 A 300 ASN LYS ARG ILE SER ALA LYS ALA ALA LEU ALA HIS PRO SEQRES 23 A 300 PHE PHE GLN ASP VAL THR LYS PRO VAL PRO HIS LEU ARG SEQRES 24 A 300 LEU SEQRES 1 B 262 SER VAL ASN GLU VAL PRO ASP TYR HIS GLU ASP ILE HIS SEQRES 2 B 262 THR TYR LEU ARG GLU MET GLU VAL LYS CYS LYS PRO LYS SEQRES 3 B 262 VAL GLY TYR MET LYS LYS GLN PRO ASP ILE THR ASN SER SEQRES 4 B 262 MET ARG ALA ILE LEU VAL ASP TRP LEU VAL GLU VAL GLY SEQRES 5 B 262 GLU GLU TYR LYS LEU GLN ASN GLU THR LEU HIS LEU ALA SEQRES 6 B 262 VAL ASN TYR ILE ASP ARG PHE LEU SER SER MET SER VAL SEQRES 7 B 262 LEU ARG GLY LYS LEU GLN LEU VAL GLY THR ALA ALA MET SEQRES 8 B 262 LEU LEU ALA SER LYS PHE GLU GLU ILE TYR PRO PRO GLU SEQRES 9 B 262 VAL ALA GLU PHE VAL TYR ILE THR ASP ASP THR TYR THR SEQRES 10 B 262 LYS LYS GLN VAL LEU ARG MET GLU HIS LEU VAL LEU LYS SEQRES 11 B 262 VAL LEU ALA PHE ASP LEU ALA ALA PRO THR ILE ASN GLN SEQRES 12 B 262 PHE LEU THR GLN TYR PHE LEU HIS GLN GLN PRO ALA ASN SEQRES 13 B 262 CYS LYS VAL GLU SER LEU ALA MET PHE LEU GLY GLU LEU SEQRES 14 B 262 SER LEU ILE ASP ALA ASP PRO TYR LEU LYS TYR LEU PRO SEQRES 15 B 262 SER VAL ILE ALA ALA ALA ALA PHE HIS LEU ALA LEU TYR SEQRES 16 B 262 THR VAL THR GLY GLN SER TRP PRO GLU SER LEU VAL GLN SEQRES 17 B 262 LYS THR GLY TYR THR LEU GLU THR LEU LYS PRO CYS LEU SEQRES 18 B 262 LEU ASP LEU HIS GLN THR TYR LEU ARG ALA PRO GLN HIS SEQRES 19 B 262 ALA GLN GLN SER ILE ARG GLU LYS TYR LYS ASN SER LYS SEQRES 20 B 262 TYR HIS GLY VAL SER LEU LEU ASN PRO PRO GLU THR LEU SEQRES 21 B 262 ASN VAL SEQRES 1 C 300 GLY SER MET GLU ASN PHE GLN LYS VAL GLU LYS ILE GLY SEQRES 2 C 300 GLU GLY THR TYR GLY VAL VAL TYR LYS ALA ARG ASN LYS SEQRES 3 C 300 LEU THR GLY GLU VAL VAL ALA LEU LYS LYS ILE ARG LEU SEQRES 4 C 300 ASP THR GLU THR GLU GLY VAL PRO SER THR ALA ILE ARG SEQRES 5 C 300 GLU ILE SER LEU LEU LYS GLU LEU ASN HIS PRO ASN ILE SEQRES 6 C 300 VAL LYS LEU LEU ASP VAL ILE HIS THR GLU ASN LYS LEU SEQRES 7 C 300 TYR LEU VAL PHE GLU PHE LEU HIS GLN ASP LEU LYS LYS SEQRES 8 C 300 PHE MET ASP ALA SER ALA LEU THR GLY ILE PRO LEU PRO SEQRES 9 C 300 LEU ILE LYS SER TYR LEU PHE GLN LEU LEU GLN GLY LEU SEQRES 10 C 300 ALA PHE CYS HIS SER HIS ARG VAL LEU HIS ARG ASP LEU SEQRES 11 C 300 LYS PRO GLN ASN LEU LEU ILE ASN THR GLU GLY ALA ILE SEQRES 12 C 300 LYS LEU ALA ASP PHE GLY LEU ALA ARG ALA PHE GLY VAL SEQRES 13 C 300 PRO VAL ARG THR TYR TPO HIS GLU VAL VAL THR LEU TRP SEQRES 14 C 300 TYR ARG ALA PRO GLU ILE LEU LEU GLY CYS LYS TYR TYR SEQRES 15 C 300 SER THR ALA VAL ASP ILE TRP SER LEU GLY CYS ILE PHE SEQRES 16 C 300 ALA GLU MET VAL THR ARG ARG ALA LEU PHE PRO GLY ASP SEQRES 17 C 300 SER GLU ILE ASP GLN LEU PHE ARG ILE PHE ARG THR LEU SEQRES 18 C 300 GLY THR PRO ASP GLU VAL VAL TRP PRO GLY VAL THR SER SEQRES 19 C 300 MET PRO ASP TYR LYS PRO SER PHE PRO LYS TRP ALA ARG SEQRES 20 C 300 GLN ASP PHE SER LYS VAL VAL PRO PRO LEU ASP GLU ASP SEQRES 21 C 300 GLY ARG SER LEU LEU SER GLN MET LEU HIS TYR ASP PRO SEQRES 22 C 300 ASN LYS ARG ILE SER ALA LYS ALA ALA LEU ALA HIS PRO SEQRES 23 C 300 PHE PHE GLN ASP VAL THR LYS PRO VAL PRO HIS LEU ARG SEQRES 24 C 300 LEU SEQRES 1 D 262 SER VAL ASN GLU VAL PRO ASP TYR HIS GLU ASP ILE HIS SEQRES 2 D 262 THR TYR LEU ARG GLU MET GLU VAL LYS CYS LYS PRO LYS SEQRES 3 D 262 VAL GLY TYR MET LYS LYS GLN PRO ASP ILE THR ASN SER SEQRES 4 D 262 MET ARG ALA ILE LEU VAL ASP TRP LEU VAL GLU VAL GLY SEQRES 5 D 262 GLU GLU TYR LYS LEU GLN ASN GLU THR LEU HIS LEU ALA SEQRES 6 D 262 VAL ASN TYR ILE ASP ARG PHE LEU SER SER MET SER VAL SEQRES 7 D 262 LEU ARG GLY LYS LEU GLN LEU VAL GLY THR ALA ALA MET SEQRES 8 D 262 LEU LEU ALA SER LYS PHE GLU GLU ILE TYR PRO PRO GLU SEQRES 9 D 262 VAL ALA GLU PHE VAL TYR ILE THR ASP ASP THR TYR THR SEQRES 10 D 262 LYS LYS GLN VAL LEU ARG MET GLU HIS LEU VAL LEU LYS SEQRES 11 D 262 VAL LEU ALA PHE ASP LEU ALA ALA PRO THR ILE ASN GLN SEQRES 12 D 262 PHE LEU THR GLN TYR PHE LEU HIS GLN GLN PRO ALA ASN SEQRES 13 D 262 CYS LYS VAL GLU SER LEU ALA MET PHE LEU GLY GLU LEU SEQRES 14 D 262 SER LEU ILE ASP ALA ASP PRO TYR LEU LYS TYR LEU PRO SEQRES 15 D 262 SER VAL ILE ALA ALA ALA ALA PHE HIS LEU ALA LEU TYR SEQRES 16 D 262 THR VAL THR GLY GLN SER TRP PRO GLU SER LEU VAL GLN SEQRES 17 D 262 LYS THR GLY TYR THR LEU GLU THR LEU LYS PRO CYS LEU SEQRES 18 D 262 LEU ASP LEU HIS GLN THR TYR LEU ARG ALA PRO GLN HIS SEQRES 19 D 262 ALA GLN GLN SER ILE ARG GLU LYS TYR LYS ASN SER LYS SEQRES 20 D 262 TYR HIS GLY VAL SER LEU LEU ASN PRO PRO GLU THR LEU SEQRES 21 D 262 ASN VAL MODRES 3MY5 TPO A 160 THR PHOSPHOTHREONINE MODRES 3MY5 TPO C 160 THR PHOSPHOTHREONINE HET TPO A 160 11 HET TPO C 160 11 HET RFZ A 300 20 HET FMT A 301 3 HET SGM B 1 6 HET FMT B 2 3 HET FMT B 3 3 HET RFZ C 301 20 HET SGM D 2 6 HETNAM TPO PHOSPHOTHREONINE HETNAM RFZ 5,6-DICHLORO-1-BETA-D-RIBOFURANOSYL-1H-BENZIMIDAZOLE HETNAM FMT FORMIC ACID HETNAM SGM MONOTHIOGLYCEROL HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 5 RFZ 2(C12 H12 CL2 N2 O4) FORMUL 6 FMT 3(C H2 O2) FORMUL 7 SGM 2(C3 H8 O2 S) FORMUL 12 HOH *526(H2 O) HELIX 1 1 SER A 0 GLU A 2 5 3 HELIX 2 2 PRO A 45 LYS A 56 1 12 HELIX 3 3 LEU A 87 SER A 94 1 8 HELIX 4 4 PRO A 100 HIS A 121 1 22 HELIX 5 5 LYS A 129 GLN A 131 5 3 HELIX 6 6 THR A 165 ARG A 169 5 5 HELIX 7 7 ALA A 170 LEU A 175 1 6 HELIX 8 8 THR A 182 ARG A 199 1 18 HELIX 9 9 SER A 207 GLY A 220 1 14 HELIX 10 10 GLY A 229 MET A 233 5 5 HELIX 11 11 ASP A 247 VAL A 251 5 5 HELIX 12 12 ASP A 256 LEU A 267 1 12 HELIX 13 13 SER A 276 LEU A 281 1 6 HELIX 14 14 ALA A 282 GLN A 287 5 6 HELIX 15 15 SER B 171 VAL B 175 5 5 HELIX 16 16 TYR B 178 CYS B 193 1 16 HELIX 17 17 GLY B 198 GLN B 203 1 6 HELIX 18 18 THR B 207 LYS B 226 1 20 HELIX 19 19 GLN B 228 MET B 246 1 19 HELIX 20 20 LEU B 249 GLY B 251 5 3 HELIX 21 21 LYS B 252 GLU B 269 1 18 HELIX 22 22 GLU B 274 THR B 282 1 9 HELIX 23 23 THR B 287 ALA B 303 1 17 HELIX 24 24 THR B 310 LEU B 320 1 11 HELIX 25 25 ASN B 326 ASP B 343 1 18 HELIX 26 26 ASP B 343 LEU B 348 1 6 HELIX 27 27 LEU B 351 GLY B 369 1 19 HELIX 28 28 PRO B 373 GLY B 381 1 9 HELIX 29 29 THR B 383 ALA B 401 1 19 HELIX 30 30 PRO B 402 HIS B 404 5 3 HELIX 31 31 GLN B 407 TYR B 413 1 7 HELIX 32 32 LYS B 414 HIS B 419 5 6 HELIX 33 33 GLY B 420 LEU B 424 5 5 HELIX 34 34 PRO C 45 LEU C 58 1 14 HELIX 35 35 LEU C 87 SER C 94 1 8 HELIX 36 36 PRO C 100 HIS C 121 1 22 HELIX 37 37 LYS C 129 GLN C 131 5 3 HELIX 38 38 ASP C 145 ALA C 149 5 5 HELIX 39 39 THR C 165 ARG C 169 5 5 HELIX 40 40 ALA C 170 LEU C 175 1 6 HELIX 41 41 THR C 182 ARG C 199 1 18 HELIX 42 42 SER C 207 LEU C 219 1 13 HELIX 43 43 ASP C 256 LEU C 267 1 12 HELIX 44 44 SER C 276 LEU C 281 1 6 HELIX 45 45 ALA C 282 GLN C 287 5 6 HELIX 46 46 SER D 171 VAL D 175 5 5 HELIX 47 47 TYR D 178 CYS D 193 1 16 HELIX 48 48 GLY D 198 GLN D 203 1 6 HELIX 49 49 THR D 207 TYR D 225 1 19 HELIX 50 50 GLN D 228 MET D 246 1 19 HELIX 51 51 LEU D 249 GLY D 251 5 3 HELIX 52 52 LYS D 252 GLU D 269 1 18 HELIX 53 53 GLU D 274 THR D 282 1 9 HELIX 54 54 THR D 287 LEU D 302 1 16 HELIX 55 55 THR D 310 PHE D 319 1 10 HELIX 56 56 LEU D 320 GLN D 322 5 3 HELIX 57 57 ASN D 326 ASP D 343 1 18 HELIX 58 58 ASP D 343 LEU D 348 1 6 HELIX 59 59 LEU D 351 THR D 368 1 18 HELIX 60 60 PRO D 373 GLY D 381 1 9 HELIX 61 61 LEU D 387 ALA D 401 1 15 HELIX 62 62 PRO D 402 HIS D 404 5 3 HELIX 63 63 GLN D 407 TYR D 413 1 7 HELIX 64 64 LYS D 414 HIS D 419 5 6 HELIX 65 65 GLY D 420 LEU D 424 5 5 SHEET 1 A 5 PHE A 4 GLU A 12 0 SHEET 2 A 5 VAL A 17 ASN A 23 -1 O LYS A 20 N VAL A 7 SHEET 3 A 5 VAL A 29 ARG A 36 -1 O LEU A 32 N TYR A 19 SHEET 4 A 5 LYS A 75 GLU A 81 -1 O LEU A 76 N ILE A 35 SHEET 5 A 5 LEU A 66 HIS A 71 -1 N LEU A 67 O VAL A 79 SHEET 1 B 3 GLN A 85 ASP A 86 0 SHEET 2 B 3 LEU A 133 ILE A 135 -1 O ILE A 135 N GLN A 85 SHEET 3 B 3 ILE A 141 LEU A 143 -1 O LYS A 142 N LEU A 134 SHEET 1 C 2 VAL A 123 LEU A 124 0 SHEET 2 C 2 ARG A 150 ALA A 151 -1 O ARG A 150 N LEU A 124 SHEET 1 D 5 PHE C 4 GLU C 12 0 SHEET 2 D 5 VAL C 17 ASN C 23 -1 O VAL C 18 N ILE C 10 SHEET 3 D 5 VAL C 29 ARG C 36 -1 O LEU C 32 N TYR C 19 SHEET 4 D 5 LYS C 75 GLU C 81 -1 O LEU C 76 N ILE C 35 SHEET 5 D 5 LEU C 66 HIS C 71 -1 N LEU C 67 O VAL C 79 SHEET 1 E 3 GLN C 85 ASP C 86 0 SHEET 2 E 3 LEU C 133 ILE C 135 -1 O ILE C 135 N GLN C 85 SHEET 3 E 3 ILE C 141 LEU C 143 -1 O LYS C 142 N LEU C 134 SHEET 1 F 2 VAL C 123 LEU C 124 0 SHEET 2 F 2 ARG C 150 ALA C 151 -1 O ARG C 150 N LEU C 124 LINK C TYR A 159 N TPO A 160 1555 1555 1.32 LINK C TPO A 160 N HIS A 161 1555 1555 1.33 LINK C TYR C 159 N TPO C 160 1555 1555 1.33 LINK C TPO C 160 N HIS C 161 1555 1555 1.33 CISPEP 1 THR A 14 TYR A 15 0 8.82 CISPEP 2 TYR A 15 GLY A 16 0 1.77 CISPEP 3 VAL A 154 PRO A 155 0 -3.32 CISPEP 4 GLN B 323 PRO B 324 0 -1.76 CISPEP 5 ASP B 345 PRO B 346 0 8.74 CISPEP 6 VAL C 154 PRO C 155 0 -3.80 CISPEP 7 GLN D 323 PRO D 324 0 -2.78 CISPEP 8 ASP D 345 PRO D 346 0 10.04 SITE 1 AC1 13 ILE A 10 GLU A 12 VAL A 18 ALA A 31 SITE 2 AC1 13 LYS A 33 GLU A 81 LEU A 83 GLN A 131 SITE 3 AC1 13 LEU A 134 HOH A 394 HOH A 453 HOH A 488 SITE 4 AC1 13 HOH A 499 SITE 1 AC2 4 VAL A 226 HIS A 268 TYR A 269 HOH A 306 SITE 1 AC3 4 LYS B 192 CYS B 193 ARG B 241 ASP B 305 SITE 1 AC4 5 THR A 182 SER A 276 VAL B 175 PRO B 176 SITE 2 AC4 5 ASP B 177 SITE 1 AC5 8 ILE C 10 ALA C 31 GLU C 81 ASP C 86 SITE 2 AC5 8 GLN C 131 ASN C 132 LEU C 134 ASP C 145 SITE 1 AC6 3 CYS D 193 ARG D 241 ASP D 305 CRYST1 74.260 134.260 148.410 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013466 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006738 0.00000