PDB Short entry for 3MZH HEADER TRANSCRIPTION/DNA 12-MAY-10 3MZH TITLE CRYSTAL STRUCTURE OF CAMP RECEPTOR PROTEIN FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS IN COMPLEX WITH CAMP AND ITS DNA BINDING ELEMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY COMPND 3 CRP/FNR-FAMILY); COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: CRP, TRANSCRIPTIONAL REGULATOR, CRP/FNR FAMILY; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(P*AP*AP*AP*TP*GP*TP*GP*AP*TP*CP*TP*AP*GP*GP*TP*CP*AP*C COMPND 9 P*GP*TP*G)-3'; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(P*CP*AP*CP*GP*TP*GP*AP*CP*CP*TP*AP*GP*AP*TP*CP*AP*CP*A COMPND 14 P*TP*C)-3'; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV3676; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS TRANSCRIPTION, TRANSCRIPTION REGULATOR, CAMP, CAMP RECEPTOR PROTEIN, KEYWDS 2 CRP, RV3676, DNA-BINDING, TRANSCRIPTION REGULATION, TRANSCRIPTION- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.AKHTER,M.WILMANNS REVDAT 3 01-NOV-23 3MZH 1 REMARK SEQADV REVDAT 2 20-JUL-11 3MZH 1 MTRIX1 MTRIX2 MTRIX3 REVDAT 1 08-JUN-11 3MZH 0 JRNL AUTH Y.AKHTER,V.POGENBERG,S.E.HASNAIN,M.WILMANNS JRNL TITL CRYSTAL STRUCTURE OF CAMP RECEPTOR PROTEIN FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH DNA AND CAMP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 14182 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5836 - 4.9570 0.91 2762 150 0.2237 0.2544 REMARK 3 2 4.9570 - 3.9353 0.92 2764 133 0.2056 0.2320 REMARK 3 3 3.9353 - 3.4381 0.93 2749 152 0.2443 0.2802 REMARK 3 4 3.4381 - 3.1239 0.90 2670 138 0.2818 0.3077 REMARK 3 5 3.1239 - 2.9000 0.86 2532 132 0.3439 0.3956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 66.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.450 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.41720 REMARK 3 B22 (A**2) : 13.98160 REMARK 3 B33 (A**2) : -8.56450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.12240 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4472 REMARK 3 ANGLE : 1.465 6244 REMARK 3 CHIRALITY : 0.070 722 REMARK 3 PLANARITY : 0.010 660 REMARK 3 DIHEDRAL : 23.857 1728 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 0:107) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3337 -13.5565 -37.4638 REMARK 3 T TENSOR REMARK 3 T11: -0.2860 T22: 0.0124 REMARK 3 T33: 0.2105 T12: -0.1920 REMARK 3 T13: -0.2887 T23: -0.0982 REMARK 3 L TENSOR REMARK 3 L11: 0.8678 L22: 0.7732 REMARK 3 L33: 0.2355 L12: 0.4771 REMARK 3 L13: 0.2233 L23: 0.1686 REMARK 3 S TENSOR REMARK 3 S11: 0.5928 S12: 0.1816 S13: 0.2175 REMARK 3 S21: -0.9362 S22: -0.5888 S23: 0.1822 REMARK 3 S31: -0.0814 S32: -0.3846 S33: 0.1773 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 108:224) REMARK 3 ORIGIN FOR THE GROUP (A): -15.7792 -2.1542 -23.7718 REMARK 3 T TENSOR REMARK 3 T11: 0.0769 T22: 0.1480 REMARK 3 T33: 0.3264 T12: 0.0203 REMARK 3 T13: -0.0737 T23: -0.1126 REMARK 3 L TENSOR REMARK 3 L11: 2.5549 L22: 0.3821 REMARK 3 L33: 2.0792 L12: 0.1054 REMARK 3 L13: 0.5197 L23: 0.7302 REMARK 3 S TENSOR REMARK 3 S11: -0.0185 S12: -0.7688 S13: 0.7991 REMARK 3 S21: -0.1791 S22: -0.0368 S23: -0.0242 REMARK 3 S31: -0.4684 S32: -0.0548 S33: 0.3724 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 0:110) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2384 -10.4993 -37.5275 REMARK 3 T TENSOR REMARK 3 T11: -0.1061 T22: 0.0974 REMARK 3 T33: 0.2165 T12: -0.0304 REMARK 3 T13: 0.0044 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.4760 L22: 0.6368 REMARK 3 L33: 0.7594 L12: -0.0347 REMARK 3 L13: 0.5438 L23: 0.0992 REMARK 3 S TENSOR REMARK 3 S11: 0.1342 S12: 0.0879 S13: -0.1136 REMARK 3 S21: -0.3563 S22: -0.1384 S23: -0.1140 REMARK 3 S31: -0.0086 S32: 0.4371 S33: 0.1192 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 111:224) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0419 -22.4125 -23.2495 REMARK 3 T TENSOR REMARK 3 T11: -0.0839 T22: -0.0958 REMARK 3 T33: 0.2333 T12: -0.0643 REMARK 3 T13: -0.0234 T23: 0.1316 REMARK 3 L TENSOR REMARK 3 L11: 1.5495 L22: 0.0939 REMARK 3 L33: 1.8994 L12: 0.2734 REMARK 3 L13: -0.2044 L23: -0.5268 REMARK 3 S TENSOR REMARK 3 S11: -0.0261 S12: -1.1088 S13: -0.3874 REMARK 3 S21: -0.4122 S22: -0.0667 S23: 0.1200 REMARK 3 S31: 1.0265 S32: -0.1603 S33: -0.1400 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 3:19) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6727 -10.7135 -2.3792 REMARK 3 T TENSOR REMARK 3 T11: 0.1405 T22: 1.0398 REMARK 3 T33: 0.4017 T12: -0.1249 REMARK 3 T13: -0.0717 T23: -0.2787 REMARK 3 L TENSOR REMARK 3 L11: 3.5887 L22: 1.4100 REMARK 3 L33: 0.4347 L12: -0.8000 REMARK 3 L13: 0.2291 L23: -0.1969 REMARK 3 S TENSOR REMARK 3 S11: -0.4719 S12: -1.4210 S13: 0.4879 REMARK 3 S21: 0.0637 S22: 0.0644 S23: 0.4044 REMARK 3 S31: 0.0151 S32: -0.3483 S33: -0.1813 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 20:23) REMARK 3 ORIGIN FOR THE GROUP (A): 22.0770 -14.7359 -0.5690 REMARK 3 T TENSOR REMARK 3 T11: 0.2346 T22: 1.7735 REMARK 3 T33: 0.8353 T12: -0.1242 REMARK 3 T13: -0.2719 T23: 0.0679 REMARK 3 L TENSOR REMARK 3 L11: 1.1131 L22: 0.0802 REMARK 3 L33: 0.1519 L12: -0.1803 REMARK 3 L13: -0.1115 L23: -0.0776 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: 0.2829 S13: 0.0260 REMARK 3 S21: -0.1116 S22: 0.2574 S23: -0.4825 REMARK 3 S31: 0.2822 S32: -0.0443 S33: -0.0434 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN D AND RESID 3:18) REMARK 3 ORIGIN FOR THE GROUP (A): 1.3913 -13.3423 -1.9783 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 1.1321 REMARK 3 T33: 0.4276 T12: -0.1161 REMARK 3 T13: -0.1656 T23: 0.1279 REMARK 3 L TENSOR REMARK 3 L11: 2.3717 L22: 2.0386 REMARK 3 L33: 0.2882 L12: -0.6444 REMARK 3 L13: 0.3044 L23: 0.2686 REMARK 3 S TENSOR REMARK 3 S11: -0.5738 S12: -1.5933 S13: -0.0112 REMARK 3 S21: 0.5151 S22: 0.2299 S23: -0.1141 REMARK 3 S31: 0.0152 S32: 0.6193 S33: -0.0411 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN D AND RESID 19:22) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3651 -9.0943 -0.1579 REMARK 3 T TENSOR REMARK 3 T11: 0.0664 T22: 1.2400 REMARK 3 T33: 0.6048 T12: -0.1876 REMARK 3 T13: 0.0726 T23: 0.0312 REMARK 3 L TENSOR REMARK 3 L11: 1.6019 L22: 2.2435 REMARK 3 L33: 4.1191 L12: 0.2320 REMARK 3 L13: 1.1588 L23: 0.2645 REMARK 3 S TENSOR REMARK 3 S11: -0.9240 S12: -0.3779 S13: -0.4656 REMARK 3 S21: -0.3936 S22: 0.0487 S23: 0.2410 REMARK 3 S31: 0.0555 S32: -0.1339 S33: 0.3749 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 1:17 OR RESSEQ 20:224 REMARK 3 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 1:17 OR RESSEQ 20:224 REMARK 3 ) REMARK 3 ATOM PAIRS NUMBER : 1615 REMARK 3 RMSD : 0.602 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3MZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0066 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14717 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.278 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 2.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.35300 REMARK 200 R SYM FOR SHELL (I) : 0.35300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTO-RICKSHAW, PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GAU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M TRIS-CL REMARK 280 PH 8.5, 30%(W/V) PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.62500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 NE CZ NH1 NH2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 ASP A 45 CG OD1 OD2 REMARK 470 GLU A 66 CD OE1 OE2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 ARG A 116 NE CZ NH1 NH2 REMARK 470 GLU A 118 CD OE1 OE2 REMARK 470 PHE A 198 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 215 CG OD1 OD2 REMARK 470 GLU A 217 CG CD OE1 OE2 REMARK 470 MET B 1 CG SD CE REMARK 470 ARG B 7 CZ NH1 NH2 REMARK 470 ASP B 45 CG OD1 OD2 REMARK 470 GLU B 66 CD OE1 OE2 REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 ARG B 116 NE CZ NH1 NH2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 ASP B 197 CG OD1 OD2 REMARK 470 LEU B 212 CG CD1 CD2 REMARK 470 GLU B 217 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N4 DC C 18 O6 DG D 8 1.55 REMARK 500 N3 DC C 18 O6 DG D 8 1.99 REMARK 500 C4 DC C 18 O6 DG D 8 2.05 REMARK 500 N1 DG C 16 N4 DC D 10 2.13 REMARK 500 O GLU B 15 N SER B 17 2.15 REMARK 500 N3 DC C 18 N1 DG D 8 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC D 5 O3' DC D 5 C3' -0.102 REMARK 500 DC D 5 N1 DC D 5 C6 -0.041 REMARK 500 DC D 5 N3 DC D 5 C4 -0.049 REMARK 500 DA D 9 N3 DA D 9 C4 -0.037 REMARK 500 DA D 9 C6 DA D 9 N1 -0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 3 C1' - O4' - C4' ANGL. DEV. = -6.0 DEGREES REMARK 500 DA C 3 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DT C 8 C3' - O3' - P ANGL. DEV. = 7.4 DEGREES REMARK 500 DG C 9 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DG C 15 O4' - C1' - N9 ANGL. DEV. = 6.5 DEGREES REMARK 500 DG C 16 O4' - C1' - N9 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA C 19 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC C 20 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 23 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC D 3 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC D 5 O4' - C4' - C3' ANGL. DEV. = -7.6 DEGREES REMARK 500 DC D 5 C1' - O4' - C4' ANGL. DEV. = -7.6 DEGREES REMARK 500 DC D 5 O4' - C1' - C2' ANGL. DEV. = -5.8 DEGREES REMARK 500 DC D 5 O4' - C1' - N1 ANGL. DEV. = -5.4 DEGREES REMARK 500 DT D 7 C3' - O3' - P ANGL. DEV. = 12.2 DEGREES REMARK 500 DG D 8 O5' - P - OP2 ANGL. DEV. = 7.7 DEGREES REMARK 500 DG D 8 O4' - C4' - C3' ANGL. DEV. = -8.0 DEGREES REMARK 500 DG D 8 C1' - O4' - C4' ANGL. DEV. = -7.3 DEGREES REMARK 500 DG D 8 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DG D 8 C5 - C6 - N1 ANGL. DEV. = -3.1 DEGREES REMARK 500 DG D 8 C4 - C5 - N7 ANGL. DEV. = -3.0 DEGREES REMARK 500 DG D 8 N9 - C4 - C5 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG D 8 C5 - C6 - O6 ANGL. DEV. = 5.3 DEGREES REMARK 500 DA D 9 O5' - P - OP1 ANGL. DEV. = -6.1 DEGREES REMARK 500 DA D 9 O4' - C4' - C3' ANGL. DEV. = -4.4 DEGREES REMARK 500 DA D 9 C4' - C3' - C2' ANGL. DEV. = -7.9 DEGREES REMARK 500 DA D 9 C3' - C2' - C1' ANGL. DEV. = -5.8 DEGREES REMARK 500 DA D 9 O4' - C1' - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC D 10 O4' - C4' - C3' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC D 10 C5' - C4' - C3' ANGL. DEV. = 8.9 DEGREES REMARK 500 DC D 10 C1' - O4' - C4' ANGL. DEV. = -11.5 DEGREES REMARK 500 DC D 10 C4' - C3' - C2' ANGL. DEV. = -4.5 DEGREES REMARK 500 DC D 11 O3' - P - OP2 ANGL. DEV. = 7.4 DEGREES REMARK 500 DG D 14 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DA D 18 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA D 20 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 12 138.02 -38.46 REMARK 500 SER A 75 6.96 83.15 REMARK 500 THR B 97 -161.83 -163.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 11 GLN A 12 -149.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP A 623 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 621 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CMP B 622 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3D0S RELATED DB: PDB REMARK 900 APO-PROTEIN REMARK 900 RELATED ID: 3H3U RELATED DB: PDB REMARK 900 APO-PROTEIN REMARK 900 RELATED ID: 3I54 RELATED DB: PDB REMARK 900 CAMP BOUND REMARK 900 RELATED ID: 3I59 RELATED DB: PDB REMARK 900 N6-CAMP BOUND DBREF 3MZH A 1 224 UNP O69644 O69644_MYCTU 1 224 DBREF 3MZH B 1 224 UNP O69644 O69644_MYCTU 1 224 DBREF 3MZH C 3 23 PDB 3MZH 3MZH 3 23 DBREF 3MZH D 3 22 PDB 3MZH 3MZH 3 22 SEQADV 3MZH HIS A 0 UNP O69644 EXPRESSION TAG SEQADV 3MZH HIS B 0 UNP O69644 EXPRESSION TAG SEQRES 1 A 225 HIS MET ASP GLU ILE LEU ALA ARG ALA GLY ILE PHE GLN SEQRES 2 A 225 GLY VAL GLU PRO SER ALA ILE ALA ALA LEU THR LYS GLN SEQRES 3 A 225 LEU GLN PRO VAL ASP PHE PRO ARG GLY HIS THR VAL PHE SEQRES 4 A 225 ALA GLU GLY GLU PRO GLY ASP ARG LEU TYR ILE ILE ILE SEQRES 5 A 225 SER GLY LYS VAL LYS ILE GLY ARG ARG ALA PRO ASP GLY SEQRES 6 A 225 ARG GLU ASN LEU LEU THR ILE MET GLY PRO SER ASP MET SEQRES 7 A 225 PHE GLY GLU LEU SER ILE PHE ASP PRO GLY PRO ARG THR SEQRES 8 A 225 SER SER ALA THR THR ILE THR GLU VAL ARG ALA VAL SER SEQRES 9 A 225 MET ASP ARG ASP ALA LEU ARG SER TRP ILE ALA ASP ARG SEQRES 10 A 225 PRO GLU ILE SER GLU GLN LEU LEU ARG VAL LEU ALA ARG SEQRES 11 A 225 ARG LEU ARG ARG THR ASN ASN ASN LEU ALA ASP LEU ILE SEQRES 12 A 225 PHE THR ASP VAL PRO GLY ARG VAL ALA LYS GLN LEU LEU SEQRES 13 A 225 GLN LEU ALA GLN ARG PHE GLY THR GLN GLU GLY GLY ALA SEQRES 14 A 225 LEU ARG VAL THR HIS ASP LEU THR GLN GLU GLU ILE ALA SEQRES 15 A 225 GLN LEU VAL GLY ALA SER ARG GLU THR VAL ASN LYS ALA SEQRES 16 A 225 LEU ALA ASP PHE ALA HIS ARG GLY TRP ILE ARG LEU GLU SEQRES 17 A 225 GLY LYS SER VAL LEU ILE SER ASP SER GLU ARG LEU ALA SEQRES 18 A 225 ARG ARG ALA ARG SEQRES 1 B 225 HIS MET ASP GLU ILE LEU ALA ARG ALA GLY ILE PHE GLN SEQRES 2 B 225 GLY VAL GLU PRO SER ALA ILE ALA ALA LEU THR LYS GLN SEQRES 3 B 225 LEU GLN PRO VAL ASP PHE PRO ARG GLY HIS THR VAL PHE SEQRES 4 B 225 ALA GLU GLY GLU PRO GLY ASP ARG LEU TYR ILE ILE ILE SEQRES 5 B 225 SER GLY LYS VAL LYS ILE GLY ARG ARG ALA PRO ASP GLY SEQRES 6 B 225 ARG GLU ASN LEU LEU THR ILE MET GLY PRO SER ASP MET SEQRES 7 B 225 PHE GLY GLU LEU SER ILE PHE ASP PRO GLY PRO ARG THR SEQRES 8 B 225 SER SER ALA THR THR ILE THR GLU VAL ARG ALA VAL SER SEQRES 9 B 225 MET ASP ARG ASP ALA LEU ARG SER TRP ILE ALA ASP ARG SEQRES 10 B 225 PRO GLU ILE SER GLU GLN LEU LEU ARG VAL LEU ALA ARG SEQRES 11 B 225 ARG LEU ARG ARG THR ASN ASN ASN LEU ALA ASP LEU ILE SEQRES 12 B 225 PHE THR ASP VAL PRO GLY ARG VAL ALA LYS GLN LEU LEU SEQRES 13 B 225 GLN LEU ALA GLN ARG PHE GLY THR GLN GLU GLY GLY ALA SEQRES 14 B 225 LEU ARG VAL THR HIS ASP LEU THR GLN GLU GLU ILE ALA SEQRES 15 B 225 GLN LEU VAL GLY ALA SER ARG GLU THR VAL ASN LYS ALA SEQRES 16 B 225 LEU ALA ASP PHE ALA HIS ARG GLY TRP ILE ARG LEU GLU SEQRES 17 B 225 GLY LYS SER VAL LEU ILE SER ASP SER GLU ARG LEU ALA SEQRES 18 B 225 ARG ARG ALA ARG SEQRES 1 C 21 DA DA DA DT DG DT DG DA DT DC DT DA DG SEQRES 2 C 21 DG DT DC DA DC DG DT DG SEQRES 1 D 20 DC DA DC DG DT DG DA DC DC DT DA DG DA SEQRES 2 D 20 DT DC DA DC DA DT DC HET CMP A 623 22 HET CMP B 621 22 HET CMP B 622 22 HETNAM CMP ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE HETSYN CMP CYCLIC AMP; CAMP FORMUL 5 CMP 3(C10 H12 N5 O6 P) HELIX 1 1 MET A 1 ALA A 6 1 6 HELIX 2 2 GLU A 15 LEU A 26 1 12 HELIX 3 3 GLU A 80 ASP A 85 1 6 HELIX 4 4 ARG A 106 ARG A 116 1 11 HELIX 5 5 PRO A 117 PHE A 143 1 27 HELIX 6 6 ASP A 145 PHE A 161 1 17 HELIX 7 7 THR A 176 VAL A 184 1 9 HELIX 8 8 SER A 187 ARG A 201 1 15 HELIX 9 9 ASP A 215 ARG A 224 1 10 HELIX 10 10 HIS B 0 ALA B 8 1 9 HELIX 11 11 GLU B 15 LEU B 26 1 12 HELIX 12 12 GLU B 80 ASP B 85 1 6 HELIX 13 13 ARG B 106 ARG B 116 1 11 HELIX 14 14 PRO B 117 PHE B 143 1 27 HELIX 15 15 ASP B 145 PHE B 161 1 17 HELIX 16 16 THR B 176 GLY B 185 1 10 HELIX 17 17 SER B 187 ARG B 201 1 15 HELIX 18 18 ASP B 215 ARG B 224 1 10 SHEET 1 A 4 PRO A 28 PHE A 31 0 SHEET 2 A 4 VAL A 99 ASP A 105 -1 O ALA A 101 N VAL A 29 SHEET 3 A 4 ARG A 46 SER A 52 -1 N ILE A 51 O ARG A 100 SHEET 4 A 4 MET A 77 PHE A 78 -1 O PHE A 78 N TYR A 48 SHEET 1 B 4 THR A 36 PHE A 38 0 SHEET 2 B 4 SER A 92 THR A 95 -1 O ALA A 93 N VAL A 37 SHEET 3 B 4 VAL A 55 ARG A 60 -1 N LYS A 56 O THR A 94 SHEET 4 B 4 GLU A 66 MET A 72 -1 O MET A 72 N VAL A 55 SHEET 1 C 4 GLY A 162 GLU A 165 0 SHEET 2 C 4 ALA A 168 VAL A 171 -1 O ARG A 170 N THR A 163 SHEET 3 C 4 VAL A 211 ILE A 213 -1 O VAL A 211 N VAL A 171 SHEET 4 C 4 ILE A 204 LEU A 206 -1 N ARG A 205 O LEU A 212 SHEET 1 D 4 PRO B 28 PHE B 31 0 SHEET 2 D 4 VAL B 99 ASP B 105 -1 O ALA B 101 N VAL B 29 SHEET 3 D 4 ARG B 46 SER B 52 -1 N ILE B 51 O ARG B 100 SHEET 4 D 4 MET B 77 PHE B 78 -1 O PHE B 78 N TYR B 48 SHEET 1 E 4 THR B 36 PHE B 38 0 SHEET 2 E 4 SER B 92 THR B 95 -1 O ALA B 93 N PHE B 38 SHEET 3 E 4 VAL B 55 ARG B 60 -1 N LYS B 56 O THR B 94 SHEET 4 E 4 GLU B 66 MET B 72 -1 O MET B 72 N VAL B 55 SHEET 1 F 4 GLY B 162 GLU B 165 0 SHEET 2 F 4 ALA B 168 VAL B 171 -1 O ARG B 170 N THR B 163 SHEET 3 F 4 SER B 210 ILE B 213 -1 O ILE B 213 N LEU B 169 SHEET 4 F 4 ILE B 204 GLU B 207 -1 N ARG B 205 O LEU B 212 CISPEP 1 GLY B 13 VAL B 14 0 -17.58 SITE 1 AC1 14 PHE A 38 LEU A 69 PHE A 78 GLY A 79 SITE 2 AC1 14 GLU A 80 LEU A 81 SER A 82 ARG A 89 SITE 3 AC1 14 THR A 90 SER A 91 ARG A 130 THR A 134 SITE 4 AC1 14 ARG B 132 ASN B 135 SITE 1 AC2 15 ILE A 142 ASN B 67 LEU B 68 LEU B 69 SITE 2 AC2 15 ASN B 137 ASP B 140 LEU B 141 ARG B 149 SITE 3 AC2 15 LYS B 152 GLN B 153 GLN B 156 GLN B 182 SITE 4 AC2 15 LEU B 183 VAL B 184 GLY B 185 SITE 1 AC3 15 LEU A 131 ASN A 135 PHE B 38 ILE B 57 SITE 2 AC3 15 THR B 70 PHE B 78 GLY B 79 GLU B 80 SITE 3 AC3 15 LEU B 81 SER B 82 ARG B 89 SER B 91 SITE 4 AC3 15 ARG B 130 ARG B 133 THR B 134 CRYST1 66.130 61.250 89.940 90.00 104.29 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015122 0.000000 0.003852 0.00000 SCALE2 0.000000 0.016327 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011474 0.00000 MTRIX1 1 -0.999982 -0.004337 0.004229 -10.71750 1 MTRIX2 1 0.004355 -0.999981 0.004313 -24.13990 1 MTRIX3 1 0.004211 0.004332 0.999982 0.04822 1