PDB Short entry for 3N0U HEADER HYDROLASE, LYASE 14-MAY-10 3N0U TITLE CRYSTAL STRUCTURE OF TM1821, THE 8-OXOGUANINE DNA GLYCOSYLASE OF TITLE 2 THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE N-GLYCOSYLASE/DNA LYASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 8-OXOGUANINE DNA GLYCOSYLASE, DNA-(APURINIC OR APYRIMIDINIC COMPND 5 SITE) LYASE, AP LYASE; COMPND 6 EC: 3.2.2.-, 4.2.99.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: OGG, TM1821, TM_1821; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS STRUCTURAL GENOMICS, ISFI, DNA REPAIR, 8-OXOGUANINE, BASE EXCISION KEYWDS 2 REPAIR, PSI-2, PROTEIN STRUCTURE INITIATIVE, INTEGRATED CENTER FOR KEYWDS 3 STRUCTURE AND FUNCTION INNOVATION, HYDROLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.R.COOPER,A.ROY,Z.S.DEREWENDA,INTEGRATED CENTER FOR STRUCTURE AND AUTHOR 2 FUNCTION INNOVATION (ISFI) REVDAT 3 21-FEB-24 3N0U 1 REMARK LINK REVDAT 2 08-NOV-17 3N0U 1 REMARK REVDAT 1 06-APR-11 3N0U 0 JRNL AUTH D.R.COOPER,A.ROY,Z.S.DEREWENDA JRNL TITL CRYSTAL STRUCTURE OF TM1821, THE 8-OXOGUANINE DNA JRNL TITL 2 GLYCOSYLASE OF THERMOTOGA MARITIMA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 111488 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 5588 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.8520 - 3.2300 0.97 10825 604 0.1720 0.1800 REMARK 3 2 3.2300 - 2.5650 1.00 10835 552 0.1540 0.1910 REMARK 3 3 2.5650 - 2.2400 1.00 10739 549 0.1300 0.1760 REMARK 3 4 2.2400 - 2.0360 1.00 10609 543 0.1250 0.1800 REMARK 3 5 2.0360 - 1.8900 1.00 10594 595 0.1340 0.1950 REMARK 3 6 1.8900 - 1.7780 1.00 10581 542 0.1320 0.2060 REMARK 3 7 1.7780 - 1.6890 1.00 10559 587 0.1260 0.2080 REMARK 3 8 1.6890 - 1.6160 1.00 10550 541 0.1190 0.1940 REMARK 3 9 1.6160 - 1.5540 0.99 10539 556 0.1370 0.2140 REMARK 3 10 1.5540 - 1.5000 0.95 10069 519 0.1700 0.2630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 45.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.69800 REMARK 3 B22 (A**2) : -2.40400 REMARK 3 B33 (A**2) : 3.10200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5342 REMARK 3 ANGLE : 1.144 7167 REMARK 3 CHIRALITY : 0.065 747 REMARK 3 PLANARITY : 0.005 925 REMARK 3 DIHEDRAL : 13.353 2115 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3N0U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059237. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111883 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION DROP WAS 1:1 MIXTURE REMARK 280 OF PROTEIN AND 1M LITHIUM CHLORIDE, 0.1M TRI-SODIUM CITRATE, AND REMARK 280 20% (W/V) PEG 6000. THE CRYSTALLIZATION RESERVOIR WAS 1.5 M REMARK 280 NACL. THE CRYSTAL WAS CRYO-PROTECTED WITH LV CRYO OIL., PH 4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.43550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.94750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.81750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.94750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.43550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.81750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 MET C -11 REMARK 465 GLY C -10 REMARK 465 SER C -9 REMARK 465 ASP C -8 REMARK 465 LYS C -7 REMARK 465 ILE C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B -1 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 0 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS B 84 H TYR B 86 1.31 REMARK 500 HD1 HIS A 84 H TYR A 86 1.31 REMARK 500 HD1 HIS C 84 H TYR C 86 1.31 REMARK 500 HH12 ARG B 90 O HOH B 668 1.57 REMARK 500 O HOH B 520 O HOH B 547 1.83 REMARK 500 O HOH A 370 O HOH A 427 1.94 REMARK 500 O HOH B 340 O HOH B 572 1.98 REMARK 500 O HOH A 526 O HOH C 222 2.01 REMARK 500 O HOH C 652 O HOH C 657 2.05 REMARK 500 O HOH C 367 O HOH C 441 2.06 REMARK 500 O HOH B 223 O HOH B 623 2.06 REMARK 500 O HOH C 353 O HOH C 409 2.07 REMARK 500 O HOH C 236 O HOH C 608 2.07 REMARK 500 O HOH C 516 O HOH C 552 2.09 REMARK 500 O HOH A 407 O HOH A 621 2.09 REMARK 500 O HOH A 387 O HOH A 410 2.10 REMARK 500 O HOH A 511 O HOH A 589 2.11 REMARK 500 O HOH C 527 O HOH C 634 2.12 REMARK 500 O HOH C 591 O HOH C 597 2.14 REMARK 500 O HOH C 652 O HOH C 676 2.14 REMARK 500 OE2 GLU B 36 O HOH B 497 2.14 REMARK 500 O HOH A 526 O HOH A 667 2.17 REMARK 500 O HOH C 559 O HOH C 631 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 663 O HOH C 675 4455 1.87 REMARK 500 O HOH A 264 O HOH C 420 1655 2.16 REMARK 500 O HOH C 605 O HOH C 628 4455 2.19 REMARK 500 O HOH A 483 O HOH A 511 3655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 90 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 206 -127.49 -100.56 REMARK 500 TRP B 51 -140.72 -134.19 REMARK 500 ASP B 206 -129.06 -103.40 REMARK 500 ASP C 206 -127.72 -99.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 208 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 119 O REMARK 620 2 VAL A 120 O 72.0 REMARK 620 3 ALA A 123 O 79.2 143.4 REMARK 620 4 ILE A 126 O 81.8 102.0 95.7 REMARK 620 5 HOH A 277 O 157.1 116.8 98.4 75.8 REMARK 620 6 HOH A 399 O 112.9 82.4 88.6 165.3 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 208 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU B 119 O REMARK 620 2 VAL B 120 O 77.3 REMARK 620 3 ALA B 123 O 84.6 150.0 REMARK 620 4 ILE B 126 O 86.9 105.9 96.6 REMARK 620 5 HOH B 267 O 163.2 103.7 100.6 76.7 REMARK 620 6 HOH B 298 O 118.2 84.5 83.3 154.7 78.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 208 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU C 119 O REMARK 620 2 VAL C 120 O 74.9 REMARK 620 3 ALA C 123 O 81.9 148.0 REMARK 620 4 ILE C 126 O 83.9 104.4 94.5 REMARK 620 5 HOH C 334 O 164.4 111.1 97.2 80.6 REMARK 620 6 HOH C 415 O 113.2 84.5 84.7 162.5 82.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 208 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 283674 RELATED DB: TARGETDB DBREF 3N0U A 1 207 UNP Q9X2E1 OGG1_THEMA 1 207 DBREF 3N0U B 1 207 UNP Q9X2E1 OGG1_THEMA 1 207 DBREF 3N0U C 1 207 UNP Q9X2E1 OGG1_THEMA 1 207 SEQADV 3N0U MET A -11 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U GLY A -10 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U SER A -9 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U ASP A -8 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U LYS A -7 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U ILE A -6 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS A -5 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS A -4 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS A -3 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS A -2 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS A -1 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS A 0 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U MET B -11 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U GLY B -10 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U SER B -9 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U ASP B -8 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U LYS B -7 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U ILE B -6 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS B -5 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS B -4 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS B -3 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS B -2 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS B -1 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS B 0 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U MET C -11 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U GLY C -10 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U SER C -9 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U ASP C -8 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U LYS C -7 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U ILE C -6 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS C -5 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS C -4 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS C -3 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS C -2 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS C -1 UNP Q9X2E1 EXPRESSION TAG SEQADV 3N0U HIS C 0 UNP Q9X2E1 EXPRESSION TAG SEQRES 1 A 219 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 219 GLU GLU LEU LEU LYS GLU LEU GLU ARG ILE ARG GLU GLU SEQRES 3 A 219 ALA LYS PRO LEU VAL GLU GLN ARG PHE GLU GLU PHE LYS SEQRES 4 A 219 ARG LEU GLY GLU GLU GLY THR GLU GLU ASP LEU PHE CYS SEQRES 5 A 219 GLU LEU SER PHE CYS VAL LEU THR ALA ASN TRP SER ALA SEQRES 6 A 219 GLU GLY GLY ILE ARG ALA GLN LYS GLU ILE GLY LYS GLY SEQRES 7 A 219 PHE VAL HIS LEU PRO LEU GLU GLU LEU ALA GLU LYS LEU SEQRES 8 A 219 ARG GLU VAL GLY HIS ARG TYR PRO GLN LYS ARG ALA GLU SEQRES 9 A 219 PHE ILE VAL GLU ASN ARG LYS LEU LEU GLY LYS LEU LYS SEQRES 10 A 219 ASN LEU VAL LYS GLY ASP PRO PHE GLN SER ARG GLU PHE SEQRES 11 A 219 LEU VAL ARG ASN ALA LYS GLY ILE GLY TRP LYS GLU ALA SEQRES 12 A 219 SER HIS PHE LEU ARG ASN THR GLY VAL GLU ASP LEU ALA SEQRES 13 A 219 ILE LEU ASP LYS HIS VAL LEU ARG LEU MET LYS ARG HIS SEQRES 14 A 219 GLY LEU ILE GLN GLU ILE PRO LYS GLY TRP SER LYS LYS SEQRES 15 A 219 ARG TYR LEU TYR VAL GLU GLU ILE LEU ARG LYS VAL ALA SEQRES 16 A 219 GLU ALA PHE GLY GLU SER PRO GLY LYS PHE ASP LEU TYR SEQRES 17 A 219 LEU TRP TYR LEU VAL LYS GLY LYS VAL ASP LYS SEQRES 1 B 219 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 219 GLU GLU LEU LEU LYS GLU LEU GLU ARG ILE ARG GLU GLU SEQRES 3 B 219 ALA LYS PRO LEU VAL GLU GLN ARG PHE GLU GLU PHE LYS SEQRES 4 B 219 ARG LEU GLY GLU GLU GLY THR GLU GLU ASP LEU PHE CYS SEQRES 5 B 219 GLU LEU SER PHE CYS VAL LEU THR ALA ASN TRP SER ALA SEQRES 6 B 219 GLU GLY GLY ILE ARG ALA GLN LYS GLU ILE GLY LYS GLY SEQRES 7 B 219 PHE VAL HIS LEU PRO LEU GLU GLU LEU ALA GLU LYS LEU SEQRES 8 B 219 ARG GLU VAL GLY HIS ARG TYR PRO GLN LYS ARG ALA GLU SEQRES 9 B 219 PHE ILE VAL GLU ASN ARG LYS LEU LEU GLY LYS LEU LYS SEQRES 10 B 219 ASN LEU VAL LYS GLY ASP PRO PHE GLN SER ARG GLU PHE SEQRES 11 B 219 LEU VAL ARG ASN ALA LYS GLY ILE GLY TRP LYS GLU ALA SEQRES 12 B 219 SER HIS PHE LEU ARG ASN THR GLY VAL GLU ASP LEU ALA SEQRES 13 B 219 ILE LEU ASP LYS HIS VAL LEU ARG LEU MET LYS ARG HIS SEQRES 14 B 219 GLY LEU ILE GLN GLU ILE PRO LYS GLY TRP SER LYS LYS SEQRES 15 B 219 ARG TYR LEU TYR VAL GLU GLU ILE LEU ARG LYS VAL ALA SEQRES 16 B 219 GLU ALA PHE GLY GLU SER PRO GLY LYS PHE ASP LEU TYR SEQRES 17 B 219 LEU TRP TYR LEU VAL LYS GLY LYS VAL ASP LYS SEQRES 1 C 219 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 C 219 GLU GLU LEU LEU LYS GLU LEU GLU ARG ILE ARG GLU GLU SEQRES 3 C 219 ALA LYS PRO LEU VAL GLU GLN ARG PHE GLU GLU PHE LYS SEQRES 4 C 219 ARG LEU GLY GLU GLU GLY THR GLU GLU ASP LEU PHE CYS SEQRES 5 C 219 GLU LEU SER PHE CYS VAL LEU THR ALA ASN TRP SER ALA SEQRES 6 C 219 GLU GLY GLY ILE ARG ALA GLN LYS GLU ILE GLY LYS GLY SEQRES 7 C 219 PHE VAL HIS LEU PRO LEU GLU GLU LEU ALA GLU LYS LEU SEQRES 8 C 219 ARG GLU VAL GLY HIS ARG TYR PRO GLN LYS ARG ALA GLU SEQRES 9 C 219 PHE ILE VAL GLU ASN ARG LYS LEU LEU GLY LYS LEU LYS SEQRES 10 C 219 ASN LEU VAL LYS GLY ASP PRO PHE GLN SER ARG GLU PHE SEQRES 11 C 219 LEU VAL ARG ASN ALA LYS GLY ILE GLY TRP LYS GLU ALA SEQRES 12 C 219 SER HIS PHE LEU ARG ASN THR GLY VAL GLU ASP LEU ALA SEQRES 13 C 219 ILE LEU ASP LYS HIS VAL LEU ARG LEU MET LYS ARG HIS SEQRES 14 C 219 GLY LEU ILE GLN GLU ILE PRO LYS GLY TRP SER LYS LYS SEQRES 15 C 219 ARG TYR LEU TYR VAL GLU GLU ILE LEU ARG LYS VAL ALA SEQRES 16 C 219 GLU ALA PHE GLY GLU SER PRO GLY LYS PHE ASP LEU TYR SEQRES 17 C 219 LEU TRP TYR LEU VAL LYS GLY LYS VAL ASP LYS HET NA A 208 1 HET NA B 208 1 HET NA C 208 1 HETNAM NA SODIUM ION FORMUL 4 NA 3(NA 1+) FORMUL 7 HOH *677(H2 O) HELIX 1 1 HIS A 0 GLY A 33 1 34 HELIX 2 2 THR A 34 THR A 48 1 15 HELIX 3 3 SER A 52 GLY A 64 1 13 HELIX 4 4 LYS A 65 LEU A 70 1 6 HELIX 5 5 PRO A 71 VAL A 82 1 12 HELIX 6 6 TYR A 86 ARG A 98 1 13 HELIX 7 7 LYS A 99 LEU A 101 5 3 HELIX 8 8 LYS A 103 GLY A 110 1 8 HELIX 9 9 ASP A 111 ALA A 123 1 13 HELIX 10 10 GLY A 127 ASN A 137 1 11 HELIX 11 11 ASP A 147 HIS A 157 1 11 HELIX 12 12 SER A 168 GLY A 187 1 20 HELIX 13 13 SER A 189 GLY A 203 1 15 HELIX 14 14 HIS B 0 GLY B 33 1 34 HELIX 15 15 THR B 34 ALA B 49 1 16 HELIX 16 16 SER B 52 GLY B 64 1 13 HELIX 17 17 LYS B 65 LEU B 70 1 6 HELIX 18 18 PRO B 71 VAL B 82 1 12 HELIX 19 19 TYR B 86 ARG B 98 1 13 HELIX 20 20 LYS B 99 LEU B 101 5 3 HELIX 21 21 LYS B 103 GLY B 110 1 8 HELIX 22 22 ASP B 111 ALA B 123 1 13 HELIX 23 23 GLY B 127 ASN B 137 1 11 HELIX 24 24 ASP B 147 HIS B 157 1 11 HELIX 25 25 SER B 168 GLY B 187 1 20 HELIX 26 26 SER B 189 GLY B 203 1 15 HELIX 27 27 HIS C 0 GLY C 33 1 34 HELIX 28 28 THR C 34 THR C 48 1 15 HELIX 29 29 SER C 52 GLY C 64 1 13 HELIX 30 30 LYS C 65 LEU C 70 1 6 HELIX 31 31 PRO C 71 VAL C 82 1 12 HELIX 32 32 TYR C 86 ARG C 98 1 13 HELIX 33 33 LYS C 99 LEU C 101 5 3 HELIX 34 34 LYS C 103 GLY C 110 1 8 HELIX 35 35 ASP C 111 ALA C 123 1 13 HELIX 36 36 GLY C 127 ASN C 137 1 11 HELIX 37 37 ASP C 147 HIS C 157 1 11 HELIX 38 38 SER C 168 GLY C 187 1 20 HELIX 39 39 SER C 189 GLY C 203 1 15 LINK O LEU A 119 NA NA A 208 1555 1555 3.12 LINK O VAL A 120 NA NA A 208 1555 1555 2.35 LINK O ALA A 123 NA NA A 208 1555 1555 2.32 LINK O ILE A 126 NA NA A 208 1555 1555 2.41 LINK NA NA A 208 O HOH A 277 1555 1555 2.52 LINK NA NA A 208 O HOH A 399 1555 1555 2.65 LINK O LEU B 119 NA NA B 208 1555 1555 2.81 LINK O VAL B 120 NA NA B 208 1555 1555 2.41 LINK O ALA B 123 NA NA B 208 1555 1555 2.33 LINK O ILE B 126 NA NA B 208 1555 1555 2.33 LINK NA NA B 208 O HOH B 267 1555 1555 2.52 LINK NA NA B 208 O HOH B 298 1555 1555 2.63 LINK O LEU C 119 NA NA C 208 1555 1555 3.02 LINK O VAL C 120 NA NA C 208 1555 1555 2.37 LINK O ALA C 123 NA NA C 208 1555 1555 2.32 LINK O ILE C 126 NA NA C 208 1555 1555 2.39 LINK NA NA C 208 O HOH C 334 1555 1555 2.50 LINK NA NA C 208 O HOH C 415 1555 1555 2.60 SITE 1 AC1 6 LEU A 119 VAL A 120 ALA A 123 ILE A 126 SITE 2 AC1 6 HOH A 277 HOH A 399 SITE 1 AC2 6 LEU B 119 VAL B 120 ALA B 123 ILE B 126 SITE 2 AC2 6 HOH B 267 HOH B 298 SITE 1 AC3 6 LEU C 119 VAL C 120 ALA C 123 ILE C 126 SITE 2 AC3 6 HOH C 334 HOH C 415 CRYST1 54.871 93.635 135.895 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018225 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010680 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007359 0.00000