PDB Short entry for 3N1U HEADER HYDROLASE 17-MAY-10 3N1U TITLE STRUCTURE OF PUTATIVE HAD SUPERFAMILY (SUBFAMILY III A) HYDROLASE FROM TITLE 2 LEGIONELLA PNEUMOPHILA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROLASE, HAD SUPERFAMILY, SUBFAMILY III A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 272624; SOURCE 4 STRAIN: SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1; SOURCE 5 GENE: LPG0839; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, HYDROLASE, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 3 10-FEB-21 3N1U 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 2 1 LINK REVDAT 2 08-NOV-17 3N1U 1 REMARK REVDAT 1 21-JUL-10 3N1U 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO JRNL TITL STRUCTURE OF PUTATIVE HAD SUPERFAMILY (SUBFAMILY III A) JRNL TITL 2 HYDROLASE FROM LEGIONELLA PNEUMOPHILA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 19495 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1296 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1406 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.31000 REMARK 3 B22 (A**2) : -1.31000 REMARK 3 B33 (A**2) : 2.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.108 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1449 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1961 ; 1.574 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 187 ; 6.277 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 69 ;40.655 ;25.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 269 ;13.012 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.109 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 227 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1082 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 908 ; 1.012 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1455 ; 1.682 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 541 ; 2.846 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 504 ; 4.616 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5410 2.1270 1.4190 REMARK 3 T TENSOR REMARK 3 T11: 0.0072 T22: 0.0458 REMARK 3 T33: 0.2204 T12: -0.0016 REMARK 3 T13: 0.0122 T23: -0.0342 REMARK 3 L TENSOR REMARK 3 L11: 2.8061 L22: 1.1613 REMARK 3 L33: 0.9092 L12: 0.3984 REMARK 3 L13: 0.6141 L23: 0.0948 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: 0.0265 S13: 0.0674 REMARK 3 S21: -0.0034 S22: 0.0092 S23: -0.1780 REMARK 3 S31: -0.0250 S32: 0.1546 S33: -0.0756 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 3N1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000059273. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19515 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL2MAP, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE PH 6.5, 18% PEG REMARK 280 8K, 0.1M CALCIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.45350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.45350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.64750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.45350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.45350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.64750 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 40.45350 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 40.45350 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.64750 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 40.45350 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 40.45350 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.64750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -103.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLU A 184 REMARK 465 GLY A 185 REMARK 465 HIS A 186 REMARK 465 HIS A 187 REMARK 465 HIS A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 26 -76.71 -92.57 REMARK 500 VAL A 29 -60.63 -122.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 200 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 25 OD2 REMARK 620 2 ASP A 27 O 88.3 REMARK 620 3 ASP A 118 OD1 89.5 94.5 REMARK 620 4 HOH A 198 O 86.1 173.4 89.2 REMARK 620 5 HOH A 203 O 169.1 89.2 80.1 96.9 REMARK 620 6 HOH A 246 O 104.4 94.2 163.8 83.6 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 127 O REMARK 620 2 HOH A 249 O 70.1 REMARK 620 3 HOH A 261 O 109.6 70.0 REMARK 620 4 HOH A 262 O 163.6 97.9 75.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 147 OD1 REMARK 620 2 ASP A 147 OD2 48.2 REMARK 620 3 HOH A 249 O 125.0 77.7 REMARK 620 4 HOH A 257 O 85.4 85.0 80.5 REMARK 620 5 HOH A 261 O 117.3 96.4 71.1 150.5 REMARK 620 6 HOH A 262 O 78.5 112.9 142.6 134.3 72.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-22264A RELATED DB: TARGETDB DBREF 3N1U A 4 183 UNP Q5ZX93 Q5ZX93_LEGPH 4 183 SEQADV 3N1U MSE A 1 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U SER A 2 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U LEU A 3 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U GLU A 184 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U GLY A 185 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U HIS A 186 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U HIS A 187 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U HIS A 188 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U HIS A 189 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U HIS A 190 UNP Q5ZX93 EXPRESSION TAG SEQADV 3N1U HIS A 191 UNP Q5ZX93 EXPRESSION TAG SEQRES 1 A 191 MSE SER LEU ASN THR GLU ILE GLU MSE ASN GLU LEU LEU SEQRES 2 A 191 GLU LYS ALA LYS LYS ILE LYS CYS LEU ILE CYS ASP VAL SEQRES 3 A 191 ASP GLY VAL LEU SER ASP GLY LEU LEU HIS ILE ASP ASN SEQRES 4 A 191 HIS GLY ASN GLU LEU LYS SER PHE HIS VAL GLN ASP GLY SEQRES 5 A 191 MSE GLY LEU LYS LEU LEU MSE ALA ALA GLY ILE GLN VAL SEQRES 6 A 191 ALA ILE ILE THR THR ALA GLN ASN ALA VAL VAL ASP HIS SEQRES 7 A 191 ARG MSE GLU GLN LEU GLY ILE THR HIS TYR TYR LYS GLY SEQRES 8 A 191 GLN VAL ASP LYS ARG SER ALA TYR GLN HIS LEU LYS LYS SEQRES 9 A 191 THR LEU GLY LEU ASN ASP ASP GLU PHE ALA TYR ILE GLY SEQRES 10 A 191 ASP ASP LEU PRO ASP LEU PRO LEU ILE GLN GLN VAL GLY SEQRES 11 A 191 LEU GLY VAL ALA VAL SER ASN ALA VAL PRO GLN VAL LEU SEQRES 12 A 191 GLU PHE ALA ASP TRP ARG THR GLU ARG THR GLY GLY ARG SEQRES 13 A 191 GLY ALA VAL ARG GLU LEU CYS ASP LEU ILE LEU ASN ALA SEQRES 14 A 191 GLN ASN LYS ALA GLU LEU ALA ILE THR GLY TYR LEU LYS SEQRES 15 A 191 GLN GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3N1U MSE A 9 MET SELENOMETHIONINE MODRES 3N1U MSE A 53 MET SELENOMETHIONINE MODRES 3N1U MSE A 59 MET SELENOMETHIONINE MODRES 3N1U MSE A 80 MET SELENOMETHIONINE HET MSE A 9 8 HET MSE A 53 8 HET MSE A 59 8 HET MSE A 80 8 HET CA A 200 1 HET CA A 201 2 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 HOH *73(H2 O) HELIX 1 1 SER A 2 LYS A 18 1 17 HELIX 2 2 HIS A 48 ALA A 61 1 14 HELIX 3 3 ASN A 73 GLY A 84 1 12 HELIX 4 4 LYS A 95 GLY A 107 1 13 HELIX 5 5 ASN A 109 ASP A 111 5 3 HELIX 6 6 ASP A 119 PRO A 121 5 3 HELIX 7 7 ASP A 122 VAL A 129 1 8 HELIX 8 8 VAL A 139 ALA A 146 1 8 HELIX 9 9 GLY A 157 GLN A 170 1 14 HELIX 10 10 LYS A 172 LYS A 182 1 11 SHEET 1 A 6 HIS A 87 TYR A 89 0 SHEET 2 A 6 GLN A 64 ILE A 68 1 N ILE A 67 O TYR A 89 SHEET 3 A 6 CYS A 21 CYS A 24 1 N CYS A 24 O ALA A 66 SHEET 4 A 6 PHE A 113 GLY A 117 1 O ALA A 114 N ILE A 23 SHEET 5 A 6 LEU A 131 ALA A 134 1 O VAL A 133 N TYR A 115 SHEET 6 A 6 TRP A 148 ARG A 149 1 O TRP A 148 N ALA A 134 SHEET 1 B 2 HIS A 36 ILE A 37 0 SHEET 2 B 2 GLU A 43 LEU A 44 -1 O LEU A 44 N HIS A 36 LINK C GLU A 8 N MSE A 9 1555 1555 1.34 LINK C MSE A 9 N ASN A 10 1555 1555 1.33 LINK C GLY A 52 N MSE A 53 1555 1555 1.32 LINK C MSE A 53 N GLY A 54 1555 1555 1.34 LINK C LEU A 58 N MSE A 59 1555 1555 1.32 LINK C MSE A 59 N ALA A 60 1555 1555 1.35 LINK C ARG A 79 N MSE A 80 1555 1555 1.34 LINK C MSE A 80 N GLU A 81 1555 1555 1.33 LINK OD2 ASP A 25 CA CA A 200 1555 1555 2.20 LINK O ASP A 27 CA CA A 200 1555 1555 2.37 LINK OD1 ASP A 118 CA CA A 200 1555 1555 2.19 LINK O GLN A 127 CA B CA A 201 1555 1555 2.56 LINK OD1 ASP A 147 CA A CA A 201 1555 1555 2.57 LINK OD2 ASP A 147 CA A CA A 201 1555 1555 2.79 LINK O HOH A 198 CA CA A 200 1555 1555 2.44 LINK CA CA A 200 O HOH A 203 1555 1555 2.40 LINK CA CA A 200 O HOH A 246 1555 1555 2.40 LINK CA A CA A 201 O HOH A 249 1555 1555 1.89 LINK CA B CA A 201 O HOH A 249 1555 1555 2.52 LINK CA A CA A 201 O HOH A 257 1555 1555 2.68 LINK CA B CA A 201 O HOH A 261 1555 1555 2.12 LINK CA A CA A 201 O HOH A 261 1555 1555 2.61 LINK CA A CA A 201 O HOH A 262 1555 1555 2.04 LINK CA B CA A 201 O HOH A 262 1555 1555 2.41 SITE 1 AC1 6 ASP A 25 ASP A 27 ASP A 118 HOH A 198 SITE 2 AC1 6 HOH A 203 HOH A 246 SITE 1 AC2 6 GLN A 127 ASP A 147 HOH A 249 HOH A 257 SITE 2 AC2 6 HOH A 261 HOH A 262 CRYST1 80.907 80.907 65.295 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012360 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015315 0.00000