PDB Short entry for 3NQU HEADER DNA BINDING PROTEIN 29-JUN-10 3NQU TITLE CRYSTAL STRUCTURE OF PARTIALLY TRYPSINIZED (CENP-A/H4)2 HETEROTETRAMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3-LIKE CENTROMERIC PROTEIN A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CENTROMERE PROTEIN A, CENP-A, CENTROMERE AUTOANTIGEN A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HISTONE H4; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CENPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: HIST1H4A, H4/A, H4FA; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA HELIX, HISTONE FOLD, CENTROMERE, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SEKULIC,B.E.BLACK REVDAT 5 06-SEP-23 3NQU 1 REMARK REVDAT 4 13-OCT-10 3NQU 1 JRNL REVDAT 3 08-SEP-10 3NQU 1 JRNL REVDAT 2 01-SEP-10 3NQU 1 350 REMARK REVDAT 1 25-AUG-10 3NQU 0 JRNL AUTH N.SEKULIC,E.A.BASSETT,D.J.ROGERS,B.E.BLACK JRNL TITL THE STRUCTURE OF (CENP-A-H4)(2) REVEALS PHYSICAL FEATURES JRNL TITL 2 THAT MARK CENTROMERES. JRNL REF NATURE V. 467 347 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20739937 JRNL DOI 10.1038/NATURE09323 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 3 NUMBER OF REFLECTIONS : 6806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 330 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 479 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1126 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.11000 REMARK 3 B22 (A**2) : -2.11000 REMARK 3 B33 (A**2) : 3.16000 REMARK 3 B12 (A**2) : -1.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.470 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.330 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.448 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1189 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1614 ; 1.637 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 147 ; 6.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;34.354 ;21.346 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 207 ;18.185 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;26.549 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 188 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 863 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 717 ; 0.678 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1152 ; 1.277 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 472 ; 2.163 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 459 ; 3.587 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 59 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 47.3548 38.6443 12.3843 REMARK 3 T TENSOR REMARK 3 T11: 0.2757 T22: 0.3472 REMARK 3 T33: 0.4255 T12: -0.0055 REMARK 3 T13: -0.0070 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: -0.2546 L22: 15.3420 REMARK 3 L33: 14.5216 L12: -0.8599 REMARK 3 L13: 15.2125 L23: -10.9189 REMARK 3 S TENSOR REMARK 3 S11: 0.1067 S12: -0.1316 S13: 0.3621 REMARK 3 S21: -0.0128 S22: 0.3877 S23: -0.7258 REMARK 3 S31: -0.6355 S32: 0.1822 S33: -0.4944 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 84 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8801 37.5922 -1.3915 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.2294 REMARK 3 T33: 0.2333 T12: -0.0148 REMARK 3 T13: -0.0100 T23: 0.0767 REMARK 3 L TENSOR REMARK 3 L11: 8.0658 L22: 0.4476 REMARK 3 L33: 2.2002 L12: -0.3103 REMARK 3 L13: 4.6222 L23: 0.3591 REMARK 3 S TENSOR REMARK 3 S11: -0.2440 S12: 0.4779 S13: 0.5023 REMARK 3 S21: -0.0376 S22: -0.0337 S23: -0.0912 REMARK 3 S31: -0.2195 S32: 0.2670 S33: 0.2777 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 85 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 34.2398 42.0111 10.0753 REMARK 3 T TENSOR REMARK 3 T11: 0.3352 T22: 0.3083 REMARK 3 T33: 0.2509 T12: 0.0466 REMARK 3 T13: -0.0664 T23: -0.0702 REMARK 3 L TENSOR REMARK 3 L11: 15.1019 L22: 33.7722 REMARK 3 L33: -6.7377 L12: -17.8942 REMARK 3 L13: 9.2334 L23: 3.9563 REMARK 3 S TENSOR REMARK 3 S11: -0.6715 S12: 1.5679 S13: 0.1423 REMARK 3 S21: 0.9059 S22: 0.1017 S23: 0.1935 REMARK 3 S31: -0.7440 S32: 1.1931 S33: 0.5699 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 121 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2323 20.6824 15.9238 REMARK 3 T TENSOR REMARK 3 T11: 0.2660 T22: 0.2485 REMARK 3 T33: 0.0699 T12: 0.0094 REMARK 3 T13: -0.0136 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.1991 L22: 6.0650 REMARK 3 L33: 0.5026 L12: -1.7726 REMARK 3 L13: 0.0119 L23: -0.9799 REMARK 3 S TENSOR REMARK 3 S11: -0.1798 S12: -0.2686 S13: 0.0408 REMARK 3 S21: 0.3918 S22: 0.0671 S23: 0.0107 REMARK 3 S31: -0.0937 S32: 0.0107 S33: 0.1127 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 122 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): 45.1424 13.7072 9.5314 REMARK 3 T TENSOR REMARK 3 T11: 0.1633 T22: 0.1836 REMARK 3 T33: 0.2428 T12: -0.0164 REMARK 3 T13: 0.0078 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 12.6478 L22: 6.9600 REMARK 3 L33: 0.9125 L12: -2.6083 REMARK 3 L13: -1.4965 L23: -1.9203 REMARK 3 S TENSOR REMARK 3 S11: -0.1005 S12: 0.5725 S13: 0.2026 REMARK 3 S21: -0.2429 S22: 0.1999 S23: 0.4989 REMARK 3 S31: 0.2392 S32: -0.1452 S33: -0.0993 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 25 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 51.9482 32.5452 4.1526 REMARK 3 T TENSOR REMARK 3 T11: 0.2629 T22: 0.2840 REMARK 3 T33: 0.2700 T12: -0.0524 REMARK 3 T13: -0.0683 T23: 0.0982 REMARK 3 L TENSOR REMARK 3 L11: 10.5420 L22: 3.5641 REMARK 3 L33: 8.2277 L12: -6.8196 REMARK 3 L13: 6.2935 L23: 0.4866 REMARK 3 S TENSOR REMARK 3 S11: 0.3226 S12: 0.6371 S13: 1.1313 REMARK 3 S21: -0.3679 S22: -0.4987 S23: -0.7559 REMARK 3 S31: -0.0671 S32: 0.4414 S33: 0.1761 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 44 REMARK 3 ORIGIN FOR THE GROUP (A): 53.8328 27.0357 16.7554 REMARK 3 T TENSOR REMARK 3 T11: 0.2302 T22: 0.3213 REMARK 3 T33: 0.1561 T12: 0.0019 REMARK 3 T13: -0.0308 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: -1.5398 L22: 3.3328 REMARK 3 L33: 14.9216 L12: 1.2533 REMARK 3 L13: -1.9425 L23: -1.6614 REMARK 3 S TENSOR REMARK 3 S11: 0.2449 S12: -0.1730 S13: 0.1102 REMARK 3 S21: 0.4519 S22: -0.2502 S23: 0.0946 REMARK 3 S31: -0.2577 S32: 0.5132 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 45 B 52 REMARK 3 ORIGIN FOR THE GROUP (A): 55.4424 22.0806 6.9911 REMARK 3 T TENSOR REMARK 3 T11: 0.2051 T22: 0.3719 REMARK 3 T33: 0.0490 T12: 0.0078 REMARK 3 T13: 0.0277 T23: 0.1051 REMARK 3 L TENSOR REMARK 3 L11: 1.0430 L22: 8.2744 REMARK 3 L33: 3.7007 L12: 5.4929 REMARK 3 L13: -2.5941 L23: 0.5611 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: 0.0548 S13: -0.0111 REMARK 3 S21: -0.2021 S22: -0.1230 S23: -0.1125 REMARK 3 S31: -0.2180 S32: -0.0087 S33: 0.0511 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 67 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9697 27.3486 4.3859 REMARK 3 T TENSOR REMARK 3 T11: 0.2641 T22: 0.3228 REMARK 3 T33: 0.0171 T12: 0.0525 REMARK 3 T13: -0.0483 T23: -0.0354 REMARK 3 L TENSOR REMARK 3 L11: 3.9152 L22: 4.5762 REMARK 3 L33: 0.9367 L12: 4.5678 REMARK 3 L13: -1.0041 L23: -2.1873 REMARK 3 S TENSOR REMARK 3 S11: 0.2338 S12: 0.3576 S13: 0.1085 REMARK 3 S21: -0.2314 S22: -0.2393 S23: 0.0634 REMARK 3 S31: 0.1450 S32: -0.0491 S33: 0.0055 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 68 B 78 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8942 36.5740 4.5719 REMARK 3 T TENSOR REMARK 3 T11: 0.2041 T22: 0.3145 REMARK 3 T33: 0.2023 T12: 0.1595 REMARK 3 T13: 0.0254 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 28.1688 L22: 14.0693 REMARK 3 L33: -2.6615 L12: -9.3912 REMARK 3 L13: 4.8519 L23: -3.9636 REMARK 3 S TENSOR REMARK 3 S11: -0.0844 S12: -0.4076 S13: -0.4779 REMARK 3 S21: 0.9698 S22: -0.0148 S23: 0.3315 REMARK 3 S31: -0.1837 S32: -0.2864 S33: 0.0992 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 79 B 91 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7451 35.6252 11.0089 REMARK 3 T TENSOR REMARK 3 T11: 0.0447 T22: 0.4349 REMARK 3 T33: 0.3059 T12: 0.0643 REMARK 3 T13: 0.0238 T23: -0.1337 REMARK 3 L TENSOR REMARK 3 L11: 5.0300 L22: 4.9877 REMARK 3 L33: 9.5125 L12: -0.7737 REMARK 3 L13: -1.8920 L23: -6.1852 REMARK 3 S TENSOR REMARK 3 S11: -0.1124 S12: -0.9773 S13: 0.6015 REMARK 3 S21: 0.3243 S22: 0.7034 S23: 0.3894 REMARK 3 S31: -0.0530 S32: -0.7781 S33: -0.5910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 7.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91983 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7136 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 53.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : 0.12100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.1500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : 0.68500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: TRUNCATED CHAINS A AND B OF PDB ENTRY 1KX5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULFATE, 0.1 M HEPES (PH REMARK 280 7.9), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 123.74600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.87300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.80950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 30.93650 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 154.68250 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 123.74600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 61.87300 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 30.93650 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.80950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 154.68250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -202.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 30.72850 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 53.22332 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 30.93650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 PRO A 3 REMARK 465 ARG A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 SER A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 PRO A 10 REMARK 465 GLU A 11 REMARK 465 ALA A 12 REMARK 465 PRO A 13 REMARK 465 ARG A 14 REMARK 465 ARG A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 PRO A 18 REMARK 465 SER A 19 REMARK 465 PRO A 20 REMARK 465 THR A 21 REMARK 465 PRO A 22 REMARK 465 THR A 23 REMARK 465 PRO A 24 REMARK 465 GLY A 25 REMARK 465 PRO A 26 REMARK 465 SER A 27 REMARK 465 ARG A 28 REMARK 465 ARG A 29 REMARK 465 GLY A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 LEU A 33 REMARK 465 GLY A 34 REMARK 465 ALA A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 HIS A 38 REMARK 465 GLN A 39 REMARK 465 HIS A 40 REMARK 465 SER A 41 REMARK 465 ARG A 42 REMARK 465 ARG A 43 REMARK 465 ARG A 44 REMARK 465 GLN A 45 REMARK 465 GLY A 46 REMARK 465 TRP A 47 REMARK 465 LEU A 48 REMARK 465 LYS A 49 REMARK 465 GLU A 50 REMARK 465 ILE A 51 REMARK 465 ARG A 52 REMARK 465 LYS A 53 REMARK 465 LEU A 54 REMARK 465 GLN A 55 REMARK 465 LYS A 56 REMARK 465 SER A 57 REMARK 465 THR A 58 REMARK 465 LEU A 135 REMARK 465 GLU A 136 REMARK 465 GLU A 137 REMARK 465 GLY A 138 REMARK 465 LEU A 139 REMARK 465 GLY A 140 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 ARG B 23 REMARK 465 ASP B 24 REMARK 465 ARG B 92 REMARK 465 GLN B 93 REMARK 465 GLY B 94 REMARK 465 ARG B 95 REMARK 465 THR B 96 REMARK 465 LEU B 97 REMARK 465 TYR B 98 REMARK 465 GLY B 99 REMARK 465 PHE B 100 REMARK 465 GLY B 101 REMARK 465 GLY B 102 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 72 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 59 CG CD CE NZ REMARK 470 LYS B 77 CD CE NZ REMARK 470 LYS B 79 CD CE NZ REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 141 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 142 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NQJ RELATED DB: PDB REMARK 900 HIGHER RESOLUTION STRUCTURE OF THE SAME COMPLEX DBREF 3NQU A 1 140 UNP P49450 CENPA_HUMAN 1 140 DBREF 3NQU B 0 102 UNP P62805 H4_HUMAN 1 103 SEQRES 1 A 140 MET GLY PRO ARG ARG ARG SER ARG LYS PRO GLU ALA PRO SEQRES 2 A 140 ARG ARG ARG SER PRO SER PRO THR PRO THR PRO GLY PRO SEQRES 3 A 140 SER ARG ARG GLY PRO SER LEU GLY ALA SER SER HIS GLN SEQRES 4 A 140 HIS SER ARG ARG ARG GLN GLY TRP LEU LYS GLU ILE ARG SEQRES 5 A 140 LYS LEU GLN LYS SER THR HIS LEU LEU ILE ARG LYS LEU SEQRES 6 A 140 PRO PHE SER ARG LEU ALA ARG GLU ILE CYS VAL LYS PHE SEQRES 7 A 140 THR ARG GLY VAL ASP PHE ASN TRP GLN ALA GLN ALA LEU SEQRES 8 A 140 LEU ALA LEU GLN GLU ALA ALA GLU ALA PHE LEU VAL HIS SEQRES 9 A 140 LEU PHE GLU ASP ALA TYR LEU LEU THR LEU HIS ALA GLY SEQRES 10 A 140 ARG VAL THR LEU PHE PRO LYS ASP VAL GLN LEU ALA ARG SEQRES 11 A 140 ARG ILE ARG GLY LEU GLU GLU GLY LEU GLY SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY HET SO4 A 141 5 HET SO4 A 142 5 HET SO4 B 103 5 HET SO4 B 104 5 HET SO4 B 105 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 5(O4 S 2-) FORMUL 8 HOH *17(H2 O) HELIX 1 1 LEU A 65 ARG A 80 1 16 HELIX 2 2 GLN A 87 ALA A 116 1 30 HELIX 3 3 PHE A 122 GLY A 134 1 13 HELIX 4 4 ASN B 25 ILE B 29 5 5 HELIX 5 5 THR B 30 GLY B 41 1 12 HELIX 6 6 LEU B 49 ALA B 76 1 28 HELIX 7 7 THR B 82 LYS B 91 1 10 SHEET 1 A 2 ASN A 85 TRP A 86 0 SHEET 2 A 2 THR B 80 VAL B 81 1 O VAL B 81 N ASN A 85 SHEET 1 B 2 THR A 120 LEU A 121 0 SHEET 2 B 2 ARG B 45 ILE B 46 1 O ARG B 45 N LEU A 121 SITE 1 AC1 3 ARG A 118 VAL A 119 THR A 120 SITE 1 AC2 4 ARG A 80 LYS B 31 TYR B 51 ARG B 67 SITE 1 AC3 3 ARG B 78 LYS B 79 THR B 80 SITE 1 AC4 3 THR B 30 PRO B 32 ARG B 36 SITE 1 AC5 2 PRO B 32 ARG B 35 CRYST1 61.457 61.457 185.619 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016272 0.009394 0.000000 0.00000 SCALE2 0.000000 0.018789 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005387 0.00000