PDB Short entry for 3NSI HEADER METAL BINDING PROTEIN 01-JUL-10 3NSI TITLE CRYSTAL STRUCTURE OF THE POST-REFOLDED S100A3 PROTEIN EXPRESSED IN TITLE 2 INSECT CELL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN S100-A3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: S100 CALCIUM-BINDING PROTEIN A3, PROTEIN S-100E; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: S100A3, S100E; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: IPLB-SF21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS EF-HAND, CA2+, ZN2+-BINDING, ACETHYLATION, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.UNNO,H.TAKAHARA,K.KIZAWA REVDAT 3 01-NOV-23 3NSI 1 REMARK REVDAT 2 27-JUN-12 3NSI 1 JRNL VERSN REVDAT 1 16-MAR-11 3NSI 0 JRNL AUTH M.UNNO,T.KAWASAKI,H.TAKAHARA,C.W.HEIZMANN,K.KIZAWA JRNL TITL REFINED CRYSTAL STRUCTURES OF HUMAN CA(2+)/ZN(2+)-BINDING JRNL TITL 2 S100A3 PROTEIN CHARACTERIZED BY TWO DISULFIDE BRIDGES JRNL REF J.MOL.BIOL. V. 408 477 2011 JRNL REFN ISSN 0022-2836 JRNL PMID 21377473 JRNL DOI 10.1016/J.JMB.2011.02.055 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 471 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 687 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1519 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 25 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.37000 REMARK 3 B22 (A**2) : -0.37000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : -0.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.214 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.870 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1586 ; 0.003 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2165 ; 0.607 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 203 ; 3.486 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;24.839 ;24.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 263 ;12.230 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;11.317 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 241 ; 0.039 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1205 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 987 ; 1.522 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1593 ; 2.744 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 599 ; 4.426 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 566 ; 7.297 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 4 A 62 1 REMARK 3 1 B 4 B 62 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 460 ; 0.050 ; 0.050 REMARK 3 TIGHT THERMAL 1 A (A**2): 460 ; 0.270 ; 0.500 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 66 A 93 1 REMARK 3 1 B 66 B 93 1 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 2 A (A): 228 ; 0.120 ; 0.050 REMARK 3 TIGHT THERMAL 2 A (A**2): 228 ; 0.360 ; 0.500 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5920 2.8070 14.0390 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0792 REMARK 3 T33: 0.1471 T12: 0.0169 REMARK 3 T13: -0.0163 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 4.3846 L22: 4.9182 REMARK 3 L33: 3.6158 L12: 4.4467 REMARK 3 L13: 3.6493 L23: 3.3538 REMARK 3 S TENSOR REMARK 3 S11: -0.0910 S12: -0.0590 S13: 0.1430 REMARK 3 S21: -0.0818 S22: 0.1077 S23: 0.1403 REMARK 3 S31: -0.0420 S32: -0.1383 S33: -0.0168 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 21 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7880 10.0380 11.7300 REMARK 3 T TENSOR REMARK 3 T11: 0.0568 T22: 0.0278 REMARK 3 T33: 0.1902 T12: 0.0052 REMARK 3 T13: -0.0044 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 6.3739 L22: 0.9598 REMARK 3 L33: 2.9285 L12: 1.8510 REMARK 3 L13: 3.6721 L23: 1.3767 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: -0.0248 S13: 0.3678 REMARK 3 S21: -0.1055 S22: -0.0070 S23: 0.1136 REMARK 3 S31: -0.0949 S32: -0.0278 S33: -0.0248 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 32 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9470 -10.0690 10.3520 REMARK 3 T TENSOR REMARK 3 T11: 0.1386 T22: 0.0124 REMARK 3 T33: 0.0885 T12: -0.0105 REMARK 3 T13: -0.0527 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 5.6211 L22: 1.1283 REMARK 3 L33: 6.1563 L12: 1.2620 REMARK 3 L13: -1.6327 L23: -2.5570 REMARK 3 S TENSOR REMARK 3 S11: -0.2080 S12: -0.1091 S13: -0.1838 REMARK 3 S21: -0.1358 S22: -0.0110 S23: -0.1038 REMARK 3 S31: 0.3045 S32: -0.0061 S33: 0.2190 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 22 B 32 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9690 6.7710 15.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.1032 REMARK 3 T33: 0.1129 T12: 0.0423 REMARK 3 T13: -0.0457 T23: -0.0488 REMARK 3 L TENSOR REMARK 3 L11: 5.0831 L22: 4.6139 REMARK 3 L33: 6.4272 L12: 2.8171 REMARK 3 L13: -4.6143 L23: 0.0563 REMARK 3 S TENSOR REMARK 3 S11: -0.1001 S12: -0.1958 S13: -0.2781 REMARK 3 S21: -0.1340 S22: -0.1131 S23: -0.2100 REMARK 3 S31: 0.0276 S32: 0.1728 S33: 0.2132 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 33 A 42 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0330 -1.5540 1.5160 REMARK 3 T TENSOR REMARK 3 T11: 0.0808 T22: 0.0494 REMARK 3 T33: 0.0311 T12: -0.0383 REMARK 3 T13: -0.0352 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.7084 L22: 10.0496 REMARK 3 L33: 0.6726 L12: 0.6333 REMARK 3 L13: 1.3471 L23: 0.2284 REMARK 3 S TENSOR REMARK 3 S11: -0.1078 S12: 0.1263 S13: -0.0043 REMARK 3 S21: -0.2329 S22: 0.1218 S23: 0.0181 REMARK 3 S31: -0.0377 S32: 0.0580 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 33 B 42 REMARK 3 ORIGIN FOR THE GROUP (A): 25.6690 7.4820 24.4990 REMARK 3 T TENSOR REMARK 3 T11: 0.0352 T22: 0.1100 REMARK 3 T33: 0.0295 T12: -0.0172 REMARK 3 T13: -0.0205 T23: -0.0296 REMARK 3 L TENSOR REMARK 3 L11: 10.0597 L22: 3.7737 REMARK 3 L33: 0.4728 L12: -2.8093 REMARK 3 L13: -1.4512 L23: 1.2795 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: -0.3447 S13: 0.0767 REMARK 3 S21: 0.0474 S22: -0.0166 S23: 0.0537 REMARK 3 S31: 0.0083 S32: 0.0452 S33: -0.0008 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 43 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6920 5.2260 -2.5670 REMARK 3 T TENSOR REMARK 3 T11: 0.0758 T22: 0.0390 REMARK 3 T33: 0.0362 T12: -0.0410 REMARK 3 T13: -0.0052 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 10.0449 L22: 4.9431 REMARK 3 L33: 2.5600 L12: -2.1053 REMARK 3 L13: 0.2015 L23: -0.0866 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.3507 S13: 0.2472 REMARK 3 S21: -0.4749 S22: 0.2468 S23: -0.0915 REMARK 3 S31: 0.1368 S32: 0.0288 S33: -0.2332 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 43 B 51 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1360 -1.0930 28.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.0853 T22: 0.1972 REMARK 3 T33: 0.1056 T12: 0.0206 REMARK 3 T13: -0.0166 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 9.4107 L22: 9.2045 REMARK 3 L33: 0.7634 L12: -2.2228 REMARK 3 L13: -1.2531 L23: -1.5548 REMARK 3 S TENSOR REMARK 3 S11: -0.1731 S12: -0.8042 S13: 0.1518 REMARK 3 S21: 0.2533 S22: 0.4301 S23: 0.7684 REMARK 3 S31: 0.0609 S32: 0.0839 S33: -0.2570 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 65 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2920 -6.5160 -3.7050 REMARK 3 T TENSOR REMARK 3 T11: 0.1303 T22: 0.0707 REMARK 3 T33: 0.0255 T12: -0.0010 REMARK 3 T13: 0.0055 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 7.7606 L22: 10.8121 REMARK 3 L33: 1.3960 L12: 3.6076 REMARK 3 L13: -2.1246 L23: -3.3071 REMARK 3 S TENSOR REMARK 3 S11: -0.2422 S12: 0.5209 S13: -0.0564 REMARK 3 S21: -0.4839 S22: 0.2862 S23: 0.2703 REMARK 3 S31: 0.2831 S32: -0.1029 S33: -0.0440 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 65 REMARK 3 ORIGIN FOR THE GROUP (A): 24.5540 -4.0860 29.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.0812 T22: 0.0739 REMARK 3 T33: 0.0246 T12: -0.0043 REMARK 3 T13: -0.0088 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 12.5500 L22: 5.0070 REMARK 3 L33: 2.5880 L12: 0.5163 REMARK 3 L13: -4.8036 L23: 0.8208 REMARK 3 S TENSOR REMARK 3 S11: 0.2006 S12: -0.7002 S13: -0.0344 REMARK 3 S21: 0.1270 S22: -0.2172 S23: -0.1718 REMARK 3 S31: 0.0789 S32: 0.2629 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 66 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): 13.1980 -11.4580 9.9770 REMARK 3 T TENSOR REMARK 3 T11: 0.2652 T22: 0.0701 REMARK 3 T33: 0.2084 T12: 0.0099 REMARK 3 T13: -0.1575 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 8.3842 L22: 1.9427 REMARK 3 L33: 7.2769 L12: -0.7552 REMARK 3 L13: 0.4440 L23: -3.7133 REMARK 3 S TENSOR REMARK 3 S11: 0.4393 S12: 0.2304 S13: -0.7778 REMARK 3 S21: -0.5790 S22: -0.1432 S23: 0.1456 REMARK 3 S31: 1.1345 S32: 0.1562 S33: -0.2961 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 66 B 73 REMARK 3 ORIGIN FOR THE GROUP (A): 32.8140 -0.2170 16.1180 REMARK 3 T TENSOR REMARK 3 T11: 0.0777 T22: 0.0573 REMARK 3 T33: 0.0623 T12: 0.0515 REMARK 3 T13: -0.0259 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 9.8990 L22: 2.3725 REMARK 3 L33: 6.9760 L12: 3.3551 REMARK 3 L13: 1.9879 L23: 1.1260 REMARK 3 S TENSOR REMARK 3 S11: 0.0105 S12: -0.1558 S13: -0.5383 REMARK 3 S21: 0.2874 S22: 0.0869 S23: -0.2458 REMARK 3 S31: 0.2460 S32: 0.4361 S33: -0.0975 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 86 REMARK 3 ORIGIN FOR THE GROUP (A): 20.7660 -1.4740 6.2510 REMARK 3 T TENSOR REMARK 3 T11: 0.0751 T22: 0.0249 REMARK 3 T33: 0.1191 T12: 0.0011 REMARK 3 T13: -0.0293 T23: -0.0313 REMARK 3 L TENSOR REMARK 3 L11: 1.1659 L22: 0.6681 REMARK 3 L33: 2.7722 L12: 0.6832 REMARK 3 L13: -0.9751 L23: -1.2949 REMARK 3 S TENSOR REMARK 3 S11: -0.1717 S12: 0.0730 S13: -0.0357 REMARK 3 S21: -0.1120 S22: 0.0615 S23: -0.0567 REMARK 3 S31: 0.1797 S32: -0.1107 S33: 0.1102 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 74 B 86 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2940 -1.6830 19.8430 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.0738 REMARK 3 T33: 0.1035 T12: 0.0255 REMARK 3 T13: -0.0364 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 4.0326 L22: 0.3566 REMARK 3 L33: 2.5919 L12: 0.2752 REMARK 3 L13: -2.6351 L23: 0.0617 REMARK 3 S TENSOR REMARK 3 S11: -0.0864 S12: -0.2336 S13: -0.3087 REMARK 3 S21: -0.0375 S22: -0.1240 S23: -0.0035 REMARK 3 S31: 0.0434 S32: 0.2019 S33: 0.2103 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 87 A 94 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7270 7.2600 3.2270 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.0810 REMARK 3 T33: 0.0725 T12: -0.0126 REMARK 3 T13: 0.0105 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 10.2062 L22: 9.6279 REMARK 3 L33: 4.4714 L12: -2.9323 REMARK 3 L13: 4.6585 L23: 3.1971 REMARK 3 S TENSOR REMARK 3 S11: 0.1203 S12: 0.5937 S13: 0.1186 REMARK 3 S21: -0.3353 S22: 0.0759 S23: -0.4810 REMARK 3 S31: -0.0920 S32: 0.4021 S33: -0.1962 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 87 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7020 -6.0590 22.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.0381 T22: 0.0437 REMARK 3 T33: 0.0932 T12: -0.0200 REMARK 3 T13: 0.0051 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 4.5345 L22: 10.0669 REMARK 3 L33: 3.7461 L12: -2.3172 REMARK 3 L13: 3.8497 L23: -0.1683 REMARK 3 S TENSOR REMARK 3 S11: 0.2063 S12: -0.2649 S13: -0.2945 REMARK 3 S21: 0.2835 S22: 0.0893 S23: 0.3146 REMARK 3 S31: 0.2540 S32: -0.2171 S33: -0.2956 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3NSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9598 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3NSK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, 0.1M BICINE, PH 9, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.25433 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.50867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ARG A 3 REMARK 465 SER A 100 REMARK 465 GLN A 101 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 100 REMARK 465 GLN B 101 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 PHE A 50 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 ASN A 65 CG OD1 ND2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ARG B 3 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ASN B 65 CG OD1 ND2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 GLU B 96 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 64 -72.84 -60.01 REMARK 500 PRO A 97 118.26 -27.94 REMARK 500 THR B 64 -71.88 -61.05 REMARK 500 PRO B 97 119.11 -27.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3NSK RELATED DB: PDB REMARK 900 RELATED ID: 3NSL RELATED DB: PDB REMARK 900 RELATED ID: 3NSO RELATED DB: PDB DBREF 3NSI A 1 101 UNP P33764 S10A3_HUMAN 1 101 DBREF 3NSI B 1 101 UNP P33764 S10A3_HUMAN 1 101 SEQRES 1 A 101 MET ALA ARG PRO LEU GLU GLN ALA VAL ALA ALA ILE VAL SEQRES 2 A 101 CYS THR PHE GLN GLU TYR ALA GLY ARG CYS GLY ASP LYS SEQRES 3 A 101 TYR LYS LEU CYS GLN ALA GLU LEU LYS GLU LEU LEU GLN SEQRES 4 A 101 LYS GLU LEU ALA THR TRP THR PRO THR GLU PHE ARG GLU SEQRES 5 A 101 CYS ASP TYR ASN LYS PHE MET SER VAL LEU ASP THR ASN SEQRES 6 A 101 LYS ASP CYS GLU VAL ASP PHE VAL GLU TYR VAL ARG SER SEQRES 7 A 101 LEU ALA CYS LEU CYS LEU TYR CYS HIS GLU TYR PHE LYS SEQRES 8 A 101 ASP CYS PRO SER GLU PRO PRO CYS SER GLN SEQRES 1 B 101 MET ALA ARG PRO LEU GLU GLN ALA VAL ALA ALA ILE VAL SEQRES 2 B 101 CYS THR PHE GLN GLU TYR ALA GLY ARG CYS GLY ASP LYS SEQRES 3 B 101 TYR LYS LEU CYS GLN ALA GLU LEU LYS GLU LEU LEU GLN SEQRES 4 B 101 LYS GLU LEU ALA THR TRP THR PRO THR GLU PHE ARG GLU SEQRES 5 B 101 CYS ASP TYR ASN LYS PHE MET SER VAL LEU ASP THR ASN SEQRES 6 B 101 LYS ASP CYS GLU VAL ASP PHE VAL GLU TYR VAL ARG SER SEQRES 7 B 101 LEU ALA CYS LEU CYS LEU TYR CYS HIS GLU TYR PHE LYS SEQRES 8 B 101 ASP CYS PRO SER GLU PRO PRO CYS SER GLN FORMUL 3 HOH *25(H2 O) HELIX 1 1 PRO A 4 GLY A 21 1 18 HELIX 2 2 CYS A 30 LEU A 42 1 13 HELIX 3 3 THR A 48 PHE A 50 5 3 HELIX 4 4 ARG A 51 ASN A 65 1 15 HELIX 5 5 ASP A 71 HIS A 87 1 17 HELIX 6 6 GLU A 88 LYS A 91 5 4 HELIX 7 7 ARG B 3 GLY B 21 1 19 HELIX 8 8 CYS B 30 LEU B 42 1 13 HELIX 9 9 THR B 48 PHE B 50 5 3 HELIX 10 10 ARG B 51 ASN B 65 1 15 HELIX 11 11 ASP B 71 HIS B 87 1 17 HELIX 12 12 GLU B 88 LYS B 91 5 4 SSBOND 1 CYS A 30 CYS A 68 1555 1555 2.03 SSBOND 2 CYS A 81 CYS A 99 1555 1555 2.03 SSBOND 3 CYS B 30 CYS B 68 1555 1555 2.03 SSBOND 4 CYS B 81 CYS B 99 1555 1555 2.03 CISPEP 1 PRO A 98 CYS A 99 0 -1.04 CISPEP 2 PRO B 98 CYS B 99 0 -0.49 CRYST1 58.680 58.680 45.763 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017042 0.009839 0.000000 0.00000 SCALE2 0.000000 0.019678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021852 0.00000