PDB Short entry for 3NYV HEADER TRANSFERASE/TRANSFERASE INHIBITOR 15-JUL-10 3NYV TITLE CALCIUM-DEPENDENT PROTEIN KINASE 1 FROM TOXOPLASMA GONDII (TGCDPK1) IN TITLE 2 COMPLEX WITH NON-SPECIFIC INHIBITOR WHI-P180 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TGCDPK1, RESIDUES 30-507; COMPND 5 EC: 2.7.11.17; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: AAG53993, CDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, CALCIUM-BINDING, ATP- KEYWDS 2 BINDING, CALMODULIN, EF HAND, BUMPED KINASE INHIBITOR, STRUCTURAL KEYWDS 3 GENOMICS, MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC PROTOZOA, MSGPP, KEYWDS 4 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.T.LARSON,E.A.MERRITT,MEDICAL STRUCTURAL GENOMICS OF PATHOGENIC AUTHOR 2 PROTOZOA (MSGPP) REVDAT 4 22-NOV-23 3NYV 1 REMARK REVDAT 3 06-SEP-23 3NYV 1 REMARK SEQADV LINK REVDAT 2 08-NOV-17 3NYV 1 REMARK REVDAT 1 28-JUL-10 3NYV 0 JRNL AUTH E.T.LARSON,K.K.OJO,J.E.KIM,C.L.M.J.VERLINDE,F.S.BUCKNER, JRNL AUTH 2 W.G.J.HOL,E.A.MERRITT,W.C.VAN VOORHIS JRNL TITL BINDING MODES OF NON-SPECIFIC INHIBITORS OF JRNL TITL 2 CALCIUM-DEPENDENT PROTEIN KINASE 1 (CDPK1) FROM T. GONDII JRNL TITL 3 AND C. PARVUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.K.OJO,E.T.LARSON,K.R.KEYLOUN,L.J.CASTANEDA,A.E.DEROCHER, REMARK 1 AUTH 2 K.K.INAMPUDI,J.E.KIM,T.L.ARAKAKI,R.C.MURPHY,L.ZHANG, REMARK 1 AUTH 3 A.J.NAPULI,D.J.MALY,C.L.VERLINDE,F.S.BUCKNER,M.PARSONS, REMARK 1 AUTH 4 W.G.HOL,E.A.MERRITT,W.C.VAN VOORHIS REMARK 1 TITL TOXOPLASMA GONDII CALCIUM-DEPENDENT PROTEIN KINASE 1 IS A REMARK 1 TITL 2 TARGET FOR SELECTIVE KINASE INHIBITORS REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 17 602 2010 REMARK 1 REFN ISSN 1545-9993 REMARK 1 REFERENCE 2 REMARK 1 AUTH R.C.MURPHY,K.K.OJO,E.T.LARSON,A.CASTELLANOS-GONZALEZ, REMARK 1 AUTH 2 B.G.K.PERERA,K.R.KEYLOUN,J.E.KIM,J.G.BHANDARI,N.MULLER, REMARK 1 AUTH 3 C.L.M.J.VERLINDE,S.H.NAKAZAWA,W.G.J.HOL,F.S.BUCKNER, REMARK 1 AUTH 4 A.J.NAPULI,C.A.WHITE,E.A.MERRITT,W.C.VAN VOORHIS,D.J.MALY REMARK 1 TITL DISCOVERY OF POTENT AND SELECTIVE INHIBITORS OF CDPK1 FROM REMARK 1 TITL 2 C. PARVUM AND T. GONDII REMARK 1 REF ACS MED.CHEM.LETT. 2010 REMARK 1 REFN ISSN 1948-5875 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 36601 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1873 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.93 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2020 REMARK 3 BIN FREE R VALUE SET COUNT : 128 REMARK 3 BIN FREE R VALUE : 0.2420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : -0.87000 REMARK 3 B33 (A**2) : 0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.153 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3786 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2624 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5094 ; 1.285 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6406 ; 0.853 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 462 ; 5.083 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;36.453 ;24.833 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;14.115 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;17.901 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 562 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4157 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 745 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2278 ; 2.228 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 936 ; 0.721 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3678 ; 3.428 ; 6.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1508 ; 4.193 ; 6.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1412 ; 6.382 ;10.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5696 15.1256 73.8118 REMARK 3 T TENSOR REMARK 3 T11: 0.1431 T22: 0.1467 REMARK 3 T33: 0.1319 T12: -0.0096 REMARK 3 T13: -0.0433 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 2.2400 L22: 4.6126 REMARK 3 L33: 3.7939 L12: -1.2009 REMARK 3 L13: 1.1089 L23: -1.4864 REMARK 3 S TENSOR REMARK 3 S11: -0.1197 S12: -0.1114 S13: 0.1074 REMARK 3 S21: 0.4243 S22: 0.0412 S23: -0.0846 REMARK 3 S31: -0.2451 S32: -0.0072 S33: 0.0785 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8139 13.9602 58.4228 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.1122 REMARK 3 T33: 0.1258 T12: -0.0022 REMARK 3 T13: -0.0086 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.7108 L22: 1.2494 REMARK 3 L33: 1.6162 L12: -0.2792 REMARK 3 L13: 0.5118 L23: -0.6149 REMARK 3 S TENSOR REMARK 3 S11: 0.0146 S12: -0.0176 S13: 0.0507 REMARK 3 S21: -0.0106 S22: -0.0677 S23: -0.0891 REMARK 3 S31: 0.0651 S32: 0.0394 S33: 0.0531 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 334 REMARK 3 ORIGIN FOR THE GROUP (A): 8.0195 20.9479 40.4456 REMARK 3 T TENSOR REMARK 3 T11: 0.1326 T22: 0.1120 REMARK 3 T33: 0.0571 T12: 0.0257 REMARK 3 T13: 0.0061 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.1912 L22: 2.2487 REMARK 3 L33: 1.3155 L12: -0.2057 REMARK 3 L13: 0.0950 L23: 0.4602 REMARK 3 S TENSOR REMARK 3 S11: 0.0678 S12: 0.1334 S13: 0.0550 REMARK 3 S21: -0.3968 S22: -0.0567 S23: -0.1384 REMARK 3 S31: 0.0248 S32: 0.1297 S33: -0.0111 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 335 A 373 REMARK 3 ORIGIN FOR THE GROUP (A): 25.1096 34.7475 75.4909 REMARK 3 T TENSOR REMARK 3 T11: 0.1419 T22: 0.0977 REMARK 3 T33: 0.1369 T12: 0.0677 REMARK 3 T13: -0.0410 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.7416 L22: 0.7961 REMARK 3 L33: 7.9411 L12: -0.1844 REMARK 3 L13: 0.3465 L23: 0.3227 REMARK 3 S TENSOR REMARK 3 S11: -0.1036 S12: -0.0758 S13: 0.0503 REMARK 3 S21: 0.2911 S22: 0.1412 S23: -0.1469 REMARK 3 S31: -0.2019 S32: -0.1716 S33: -0.0376 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 374 A 440 REMARK 3 ORIGIN FOR THE GROUP (A): 30.1772 26.3991 84.1625 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.0942 REMARK 3 T33: 0.0741 T12: 0.0205 REMARK 3 T13: -0.0845 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.0858 L22: 3.2845 REMARK 3 L33: 5.7359 L12: -2.5016 REMARK 3 L13: 0.8865 L23: -2.2879 REMARK 3 S TENSOR REMARK 3 S11: 0.0704 S12: 0.0194 S13: -0.0397 REMARK 3 S21: -0.1143 S22: -0.0141 S23: 0.0574 REMARK 3 S31: 0.0894 S32: -0.0053 S33: -0.0563 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 441 A 507 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5497 37.9625 53.3718 REMARK 3 T TENSOR REMARK 3 T11: 0.0771 T22: 0.0877 REMARK 3 T33: 0.1497 T12: -0.0020 REMARK 3 T13: -0.0026 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 5.4335 L22: 0.6785 REMARK 3 L33: 3.2487 L12: -1.1416 REMARK 3 L13: -1.0470 L23: 1.0644 REMARK 3 S TENSOR REMARK 3 S11: -0.0463 S12: 0.1309 S13: 0.1607 REMARK 3 S21: 0.0120 S22: 0.0289 S23: 0.1256 REMARK 3 S31: -0.1891 S32: 0.0048 S33: 0.0174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 3NYV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3I7C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 3350, 0.275 M AMMONIUM REMARK 280 CITRATE, 5 MM DTT, 2.3 MM WHI-P180; FROZEN DIRECTLY IN LN2, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.14850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MSE A -1 REMARK 465 MSE A 0 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MSE A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 GLU A 314 REMARK 465 GLN A 315 REMARK 465 ILE A 316 REMARK 465 SER A 317 REMARK 465 VAL A 318 REMARK 465 MSE A 390 REMARK 465 LYS A 391 REMARK 465 GLY A 392 REMARK 465 GLN A 393 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 62 -9.91 73.04 REMARK 500 ASP A 107 118.22 -160.13 REMARK 500 ARG A 173 -28.77 75.97 REMARK 500 ASP A 188 44.80 -109.24 REMARK 500 ASP A 195 15.26 81.60 REMARK 500 LEU A 289 33.86 -99.68 REMARK 500 LEU A 398 51.30 -107.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTQ A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3I79 RELATED DB: PDB REMARK 900 SAME PROTEIN, APO REMARK 900 RELATED ID: 3I7B RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH NM-PP1 REMARK 900 RELATED ID: 3I7C RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH NA-PP2 REMARK 900 RELATED ID: 3N51 RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH RM-1-95 REMARK 900 RELATED ID: 3MWU RELATED DB: PDB REMARK 900 CALCIUM-ACTIVATED HOMOLOGUE FROM C. PARVUM IN COMPLEX WITH RM-1-95 REMARK 900 RELATED ID: 3NCG RELATED DB: PDB REMARK 900 CALCIUM-ACTIVATED HOMOLOGUE FROM C. PARVUM IN COMPLEX WITH NM-PP1 DBREF 3NYV A 30 507 UNP Q9BJF5 Q9BJF5_TOXGO 30 507 SEQADV 3NYV GLY A -5 UNP Q9BJF5 EXPRESSION TAG SEQADV 3NYV PRO A -4 UNP Q9BJF5 EXPRESSION TAG SEQADV 3NYV GLY A -3 UNP Q9BJF5 EXPRESSION TAG SEQADV 3NYV SER A -2 UNP Q9BJF5 EXPRESSION TAG SEQADV 3NYV MSE A -1 UNP Q9BJF5 EXPRESSION TAG SEQADV 3NYV MSE A 0 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 484 GLY PRO GLY SER MSE MSE ASP HIS LEU HIS ALA THR PRO SEQRES 2 A 484 GLY MSE PHE VAL GLN HIS SER THR ALA ILE PHE SER ASP SEQRES 3 A 484 ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SER PHE SEQRES 4 A 484 GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR GLY GLN SEQRES 5 A 484 GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN VAL LYS SEQRES 6 A 484 GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU VAL GLN SEQRES 7 A 484 LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MSE LYS LEU SEQRES 8 A 484 TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR LEU VAL SEQRES 9 A 484 GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP GLU ILE SEQRES 10 A 484 ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA ALA ARG SEQRES 11 A 484 ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR MSE HIS SEQRES 12 A 484 LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO GLU ASN SEQRES 13 A 484 LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN ILE ARG SEQRES 14 A 484 ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU ALA SER SEQRES 15 A 484 LYS LYS MSE LYS ASP LYS ILE GLY THR ALA TYR TYR ILE SEQRES 16 A 484 ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU LYS CYS SEQRES 17 A 484 ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE LEU LEU SEQRES 18 A 484 SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU TYR ASP SEQRES 19 A 484 ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR PHE GLU SEQRES 20 A 484 LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA LYS ASP SEQRES 21 A 484 LEU ILE ARG LYS MSE LEU THR TYR VAL PRO SER MSE ARG SEQRES 22 A 484 ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP ILE GLN SEQRES 23 A 484 THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL PRO SER SEQRES 24 A 484 LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE GLN GLY SEQRES 25 A 484 THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR MSE GLY SEQRES 26 A 484 SER LYS LEU THR SER GLN ASP GLU THR LYS GLU LEU THR SEQRES 27 A 484 ALA ILE PHE HIS LYS MSE ASP LYS ASN GLY ASP GLY GLN SEQRES 28 A 484 LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS GLU LEU SEQRES 29 A 484 MSE ARG MSE LYS GLY GLN ASP ALA SER MSE LEU ASP ALA SEQRES 30 A 484 SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU ASP ALA SEQRES 31 A 484 VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SER GLU SEQRES 32 A 484 PHE VAL THR VAL ALA MSE ASP ARG LYS THR LEU LEU SER SEQRES 33 A 484 ARG GLU ARG LEU GLU ARG ALA PHE ARG MSE PHE ASP SER SEQRES 34 A 484 ASP ASN SER GLY LYS ILE SER SER THR GLU LEU ALA THR SEQRES 35 A 484 ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR TRP LYS SEQRES 36 A 484 SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP GLY GLU SEQRES 37 A 484 VAL ASP PHE ASP GLU PHE GLN GLN MSE LEU LEU LYS LEU SEQRES 38 A 484 CYS GLY ASN MODRES 3NYV MSE A 112 MET SELENOMETHIONINE MODRES 3NYV MSE A 165 MET SELENOMETHIONINE MODRES 3NYV MSE A 208 MET SELENOMETHIONINE MODRES 3NYV MSE A 288 MET SELENOMETHIONINE MODRES 3NYV MSE A 295 MET SELENOMETHIONINE MODRES 3NYV MSE A 347 MET SELENOMETHIONINE MODRES 3NYV MSE A 367 MET SELENOMETHIONINE MODRES 3NYV MSE A 388 MET SELENOMETHIONINE MODRES 3NYV MSE A 397 MET SELENOMETHIONINE MODRES 3NYV MSE A 432 MET SELENOMETHIONINE MODRES 3NYV MSE A 449 MET SELENOMETHIONINE MODRES 3NYV MSE A 500 MET SELENOMETHIONINE HET MSE A 112 8 HET MSE A 165 8 HET MSE A 208 8 HET MSE A 288 8 HET MSE A 295 12 HET MSE A 347 8 HET MSE A 367 8 HET MSE A 388 8 HET MSE A 397 8 HET MSE A 432 8 HET MSE A 449 8 HET MSE A 500 8 HET DTQ A 701 22 HETNAM MSE SELENOMETHIONINE HETNAM DTQ 4-[3-HYDROXYANILINO]-6,7-DIMETHOXYQUINAZOLINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 DTQ C16 H15 N3 O3 FORMUL 3 HOH *230(H2 O) HELIX 1 1 ILE A 46 ARG A 50 1 5 HELIX 2 2 ASP A 92 LYS A 104 1 13 HELIX 3 3 GLU A 135 SER A 142 1 8 HELIX 4 4 SER A 147 ASN A 168 1 22 HELIX 5 5 LYS A 176 GLU A 178 5 3 HELIX 6 6 GLY A 197 PHE A 202 1 6 HELIX 7 7 LYS A 207 ILE A 212 1 6 HELIX 8 8 GLY A 213 TYR A 217 5 5 HELIX 9 9 ALA A 219 GLY A 225 1 7 HELIX 10 10 GLU A 229 GLY A 246 1 18 HELIX 11 11 ASN A 254 GLY A 265 1 12 HELIX 12 12 LEU A 271 VAL A 277 5 7 HELIX 13 13 SER A 278 LEU A 289 1 12 HELIX 14 14 VAL A 292 ARG A 296 5 5 HELIX 15 15 SER A 298 ASP A 304 1 7 HELIX 16 16 HIS A 305 THR A 312 1 8 HELIX 17 17 LEU A 323 ASP A 368 1 46 HELIX 18 18 ARG A 377 ARG A 389 1 13 HELIX 19 19 ASP A 394 LEU A 398 5 5 HELIX 20 20 ASP A 399 ASP A 415 1 17 HELIX 21 21 TYR A 424 ASP A 451 1 28 HELIX 22 22 SER A 460 SER A 470 1 11 HELIX 23 23 ASP A 473 ASP A 485 1 13 HELIX 24 24 PHE A 494 LEU A 504 1 11 SHEET 1 A 5 TYR A 51 GLY A 60 0 SHEET 2 A 5 GLY A 63 ASP A 70 -1 O LEU A 67 N GLN A 54 SHEET 3 A 5 GLU A 76 SER A 83 -1 O VAL A 81 N GLU A 64 SHEET 4 A 5 TYR A 123 GLY A 128 -1 O GLY A 128 N ALA A 78 SHEET 5 A 5 LEU A 114 GLU A 119 -1 N PHE A 118 O TYR A 125 SHEET 1 B 2 LEU A 180 LEU A 182 0 SHEET 2 B 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 C 2 GLN A 374 ASP A 376 0 SHEET 2 C 2 TYR A 421 GLU A 423 -1 O ILE A 422 N LEU A 375 SHEET 1 D 2 LYS A 457 SER A 459 0 SHEET 2 D 2 GLU A 491 ASP A 493 -1 O VAL A 492 N ILE A 458 LINK C ILE A 111 N MSE A 112 1555 1555 1.33 LINK C MSE A 112 N LYS A 113 1555 1555 1.32 LINK C TYR A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N HIS A 166 1555 1555 1.34 LINK C LYS A 207 N MSE A 208 1555 1555 1.33 LINK C MSE A 208 N LYS A 209 1555 1555 1.33 LINK C LYS A 287 N MSE A 288 1555 1555 1.33 LINK C MSE A 288 N LEU A 289 1555 1555 1.34 LINK C SER A 294 N MSE A 295 1555 1555 1.33 LINK C MSE A 295 N ARG A 296 1555 1555 1.33 LINK C TYR A 346 N MSE A 347 1555 1555 1.32 LINK C MSE A 347 N GLY A 348 1555 1555 1.33 LINK C LYS A 366 N MSE A 367 1555 1555 1.34 LINK C MSE A 367 N ASP A 368 1555 1555 1.33 LINK C LEU A 387 N MSE A 388 1555 1555 1.34 LINK C MSE A 388 N ARG A 389 1555 1555 1.34 LINK C SER A 396 N MSE A 397 1555 1555 1.34 LINK C MSE A 397 N LEU A 398 1555 1555 1.33 LINK C ALA A 431 N MSE A 432 1555 1555 1.33 LINK C MSE A 432 N ASP A 433 1555 1555 1.33 LINK C ARG A 448 N MSE A 449 1555 1555 1.33 LINK C MSE A 449 N PHE A 450 1555 1555 1.34 LINK C GLN A 499 N MSE A 500 1555 1555 1.33 LINK C MSE A 500 N LEU A 501 1555 1555 1.33 SITE 1 AC1 13 GLY A 58 LYS A 59 ALA A 78 LYS A 80 SITE 2 AC1 13 MSE A 112 LEU A 126 GLU A 129 TYR A 131 SITE 3 AC1 13 LEU A 181 ASP A 195 LEU A 198 HOH A 855 SITE 4 AC1 13 HOH A 861 CRYST1 48.272 72.297 67.174 90.00 103.61 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020716 0.000000 0.005014 0.00000 SCALE2 0.000000 0.013832 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015317 0.00000