PDB Short entry for 3NZK HEADER HYDROLASE 16-JUL-10 3NZK TITLE STRUCTURE OF LPXC FROM YERSINIA ENTEROCOLITICA COMPLEXED WITH CHIR090 TITLE 2 INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-[3-HYDROXYMYRISTOYL] N-ACETYLGLUCOSAMINE COMPND 3 DEACETYLASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 3.5.1.33; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 630; SOURCE 4 GENE: LPXC, YE0678; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET11A KEYWDS DEACETYLASE, ENDOTOXIN, METAL-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.E.COLE,D.W.CHRISTIANSON REVDAT 3 06-SEP-23 3NZK 1 REMARK LINK REVDAT 2 22-FEB-12 3NZK 1 JRNL VERSN REVDAT 1 05-JAN-11 3NZK 0 JRNL AUTH K.E.COLE,S.G.GATTIS,H.D.ANGELL,C.A.FIERKE,D.W.CHRISTIANSON JRNL TITL STRUCTURE OF THE METAL-DEPENDENT DEACETYLASE LPXC FROM JRNL TITL 2 YERSINIA ENTEROCOLITICA COMPLEXED WITH THE POTENT INHIBITOR JRNL TITL 3 CHIR-090 . JRNL REF BIOCHEMISTRY V. 50 258 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 21171638 JRNL DOI 10.1021/BI101622A REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 45806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2283 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.4945 - 4.5305 0.97 2842 149 0.1735 0.2024 REMARK 3 2 4.5305 - 3.5969 0.98 2818 165 0.1417 0.1717 REMARK 3 3 3.5969 - 3.1425 0.98 2870 151 0.1604 0.1820 REMARK 3 4 3.1425 - 2.8553 0.98 2880 142 0.1713 0.2381 REMARK 3 5 2.8553 - 2.6507 0.97 2809 157 0.1759 0.2240 REMARK 3 6 2.6507 - 2.4945 0.97 2827 153 0.1760 0.2286 REMARK 3 7 2.4945 - 2.3696 0.95 2774 160 0.1664 0.2195 REMARK 3 8 2.3696 - 2.2664 0.95 2767 139 0.1757 0.2227 REMARK 3 9 2.2664 - 2.1792 0.94 2814 144 0.1653 0.2181 REMARK 3 10 2.1792 - 2.1040 0.94 2760 134 0.1633 0.2176 REMARK 3 11 2.1040 - 2.0382 0.93 2707 127 0.1588 0.2059 REMARK 3 12 2.0382 - 1.9799 0.91 2686 132 0.1610 0.2172 REMARK 3 13 1.9799 - 1.9278 0.90 2660 133 0.1602 0.2226 REMARK 3 14 1.9278 - 1.8808 0.88 2561 133 0.1770 0.2289 REMARK 3 15 1.8808 - 1.8380 0.85 2450 153 0.1948 0.2526 REMARK 3 16 1.8380 - 1.8000 0.79 2298 111 0.2091 0.2744 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.39130 REMARK 3 B22 (A**2) : -0.25810 REMARK 3 B33 (A**2) : 0.64930 REMARK 3 B12 (A**2) : -2.25920 REMARK 3 B13 (A**2) : -0.56410 REMARK 3 B23 (A**2) : -0.91340 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4992 REMARK 3 ANGLE : 1.069 6754 REMARK 3 CHIRALITY : 0.070 744 REMARK 3 PLANARITY : 0.022 881 REMARK 3 DIHEDRAL : 14.966 1908 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3NZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000060476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97917 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : 0.06000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.8930 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : 0.43500 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VES REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M BIS-TRIS, 0.2 REMARK 280 MGCL2, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -4 REMARK 465 ARG A -3 REMARK 465 ASP A -2 REMARK 465 LYS A -1 REMARK 465 THR A 0 REMARK 465 ALA A 299 REMARK 465 PRO A 300 REMARK 465 SER A 301 REMARK 465 THR A 302 REMARK 465 VAL A 303 REMARK 465 LEU A 304 REMARK 465 ALA A 305 REMARK 465 TYR A 306 REMARK 465 MET B -4 REMARK 465 ARG B -3 REMARK 465 ASP B -2 REMARK 465 LYS B -1 REMARK 465 THR B 0 REMARK 465 SER B 301 REMARK 465 THR B 302 REMARK 465 VAL B 303 REMARK 465 LEU B 304 REMARK 465 ALA B 305 REMARK 465 TYR B 306 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 227 OD1 REMARK 480 LYS B 8 CE REMARK 480 LYS B 23 CD REMARK 480 ASP B 227 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 430 O HOH A 519 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 104 -128.56 52.35 REMARK 500 PHE A 150 138.28 -171.46 REMARK 500 ASP A 160 78.99 -153.08 REMARK 500 ALA B 52 92.03 -66.54 REMARK 500 MET B 104 -129.62 53.97 REMARK 500 ASN B 124 47.29 -82.05 REMARK 500 ASP B 160 86.60 -151.99 REMARK 500 ASP B 219 -153.95 -94.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 HIS A 238 NE2 92.3 REMARK 620 3 ASP A 242 OD1 99.7 101.3 REMARK 620 4 ASP A 242 OD2 154.6 94.0 54.9 REMARK 620 5 C90 A 501 O22 117.7 88.7 141.0 87.1 REMARK 620 6 C90 A 501 O22 117.5 90.0 140.7 87.1 1.3 REMARK 620 7 C90 A 501 O24 97.3 164.1 89.6 82.7 75.7 74.4 REMARK 620 8 C90 A 501 O24 97.1 164.3 89.5 82.9 75.9 74.5 0.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 79 NE2 REMARK 620 2 HIS B 238 NE2 94.1 REMARK 620 3 ASP B 242 OD1 99.7 100.9 REMARK 620 4 ASP B 242 OD2 152.7 94.1 53.2 REMARK 620 5 C90 B 501 O22 119.0 86.5 140.2 87.5 REMARK 620 6 C90 B 501 O22 119.2 87.6 139.7 87.1 1.1 REMARK 620 7 C90 B 501 O24 99.6 160.0 91.2 80.3 74.1 73.0 REMARK 620 8 C90 B 501 O24 99.2 160.4 91.1 80.6 74.4 73.4 0.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C90 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 3968 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C90 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 307 DBREF 3NZK A -4 306 UNP A1JJJ9 A1JJJ9_YERE8 1 311 DBREF 3NZK B -4 306 UNP A1JJJ9 A1JJJ9_YERE8 1 311 SEQRES 1 A 311 MET ARG ASP LYS THR MET ILE LYS GLN ARG THR LEU LYS SEQRES 2 A 311 ARG ILE VAL GLN ALA THR GLY VAL GLY LEU HIS THR GLY SEQRES 3 A 311 LYS LYS VAL THR LEU THR MET ARG PRO ALA PRO ALA ASN SEQRES 4 A 311 THR GLY VAL ILE TYR ARG ARG THR ASP LEU ASN PRO PRO SEQRES 5 A 311 VAL ASP PHE PRO ALA ASP ALA LYS SER VAL ARG ASP THR SEQRES 6 A 311 MET LEU CYS THR CYS LEU VAL ASN GLU HIS ASP VAL ARG SEQRES 7 A 311 ILE SER THR VAL GLU HIS LEU ASN ALA ALA LEU ALA GLY SEQRES 8 A 311 LEU GLY ILE ASP ASN ILE ILE ILE GLU VAL ASN ALA PRO SEQRES 9 A 311 GLU VAL PRO ILE MET ASP GLY SER ALA SER PRO PHE VAL SEQRES 10 A 311 TYR LEU LEU LEU ASP ALA GLY ILE GLU GLU LEU ASN SER SEQRES 11 A 311 ALA LYS LYS PHE LEU ARG LEU LYS GLU THR VAL ARG VAL SEQRES 12 A 311 GLU ASP GLY ASP LYS TRP ALA GLU LEU SER PRO PHE ASN SEQRES 13 A 311 GLY PHE ARG LEU ASP PHE THR ILE ASP PHE ASN HIS PRO SEQRES 14 A 311 ALA ILE ASP SER SER THR GLN ARG TYR ARG LEU ASP PHE SEQRES 15 A 311 SER ALA ASP SER PHE VAL ARG GLN ILE SER ARG ALA ARG SEQRES 16 A 311 THR PHE GLY PHE MET ARG ASP ILE GLU TYR LEU GLN SER SEQRES 17 A 311 ARG GLY LEU CYS LEU GLY GLY SER PHE ASP CYS ALA ILE SEQRES 18 A 311 VAL VAL ASP ASP TYR ARG VAL LEU ASN GLU ASP GLY LEU SEQRES 19 A 311 ARG PHE GLU ASP GLU PHE VAL ARG HIS LYS MET LEU ASP SEQRES 20 A 311 ALA ILE GLY ASP LEU PHE MET CYS GLY HIS ASN ILE ILE SEQRES 21 A 311 GLY ALA PHE THR ALA TYR LYS SER GLY HIS ALA LEU ASN SEQRES 22 A 311 ASN LYS LEU LEU GLN ALA VAL LEU ALA LYS GLN GLU ALA SEQRES 23 A 311 TRP GLU PHE VAL THR PHE GLN ASP GLU ALA GLU MET PRO SEQRES 24 A 311 LEU ALA PHE LYS ALA PRO SER THR VAL LEU ALA TYR SEQRES 1 B 311 MET ARG ASP LYS THR MET ILE LYS GLN ARG THR LEU LYS SEQRES 2 B 311 ARG ILE VAL GLN ALA THR GLY VAL GLY LEU HIS THR GLY SEQRES 3 B 311 LYS LYS VAL THR LEU THR MET ARG PRO ALA PRO ALA ASN SEQRES 4 B 311 THR GLY VAL ILE TYR ARG ARG THR ASP LEU ASN PRO PRO SEQRES 5 B 311 VAL ASP PHE PRO ALA ASP ALA LYS SER VAL ARG ASP THR SEQRES 6 B 311 MET LEU CYS THR CYS LEU VAL ASN GLU HIS ASP VAL ARG SEQRES 7 B 311 ILE SER THR VAL GLU HIS LEU ASN ALA ALA LEU ALA GLY SEQRES 8 B 311 LEU GLY ILE ASP ASN ILE ILE ILE GLU VAL ASN ALA PRO SEQRES 9 B 311 GLU VAL PRO ILE MET ASP GLY SER ALA SER PRO PHE VAL SEQRES 10 B 311 TYR LEU LEU LEU ASP ALA GLY ILE GLU GLU LEU ASN SER SEQRES 11 B 311 ALA LYS LYS PHE LEU ARG LEU LYS GLU THR VAL ARG VAL SEQRES 12 B 311 GLU ASP GLY ASP LYS TRP ALA GLU LEU SER PRO PHE ASN SEQRES 13 B 311 GLY PHE ARG LEU ASP PHE THR ILE ASP PHE ASN HIS PRO SEQRES 14 B 311 ALA ILE ASP SER SER THR GLN ARG TYR ARG LEU ASP PHE SEQRES 15 B 311 SER ALA ASP SER PHE VAL ARG GLN ILE SER ARG ALA ARG SEQRES 16 B 311 THR PHE GLY PHE MET ARG ASP ILE GLU TYR LEU GLN SER SEQRES 17 B 311 ARG GLY LEU CYS LEU GLY GLY SER PHE ASP CYS ALA ILE SEQRES 18 B 311 VAL VAL ASP ASP TYR ARG VAL LEU ASN GLU ASP GLY LEU SEQRES 19 B 311 ARG PHE GLU ASP GLU PHE VAL ARG HIS LYS MET LEU ASP SEQRES 20 B 311 ALA ILE GLY ASP LEU PHE MET CYS GLY HIS ASN ILE ILE SEQRES 21 B 311 GLY ALA PHE THR ALA TYR LYS SER GLY HIS ALA LEU ASN SEQRES 22 B 311 ASN LYS LEU LEU GLN ALA VAL LEU ALA LYS GLN GLU ALA SEQRES 23 B 311 TRP GLU PHE VAL THR PHE GLN ASP GLU ALA GLU MET PRO SEQRES 24 B 311 LEU ALA PHE LYS ALA PRO SER THR VAL LEU ALA TYR HET C90 A 501 64 HET ZN A 307 1 HET GOL A3968 6 HET C90 B 501 64 HET ZN B 307 1 HETNAM C90 N-{(1S,2R)-2-HYDROXY-1-[(HYDROXYAMINO)CARBONYL]PROPYL}- HETNAM 2 C90 4-{[4-(MORPHOLIN-4-YLMETHYL)PHENYL]ETHYNYL}BENZAMIDE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 C90 2(C24 H27 N3 O5) FORMUL 4 ZN 2(ZN 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 8 HOH *403(H2 O) HELIX 1 1 ASP A 53 VAL A 57 5 5 HELIX 2 2 VAL A 77 GLY A 88 1 12 HELIX 3 3 ALA A 108 GLY A 119 1 12 HELIX 4 4 ASP A 167 THR A 170 5 4 HELIX 5 5 SER A 178 ILE A 186 1 9 HELIX 6 6 MET A 195 SER A 203 1 9 HELIX 7 7 ASP A 233 PHE A 248 1 16 HELIX 8 8 MET A 249 GLY A 251 5 3 HELIX 9 9 GLY A 264 LYS A 278 1 15 HELIX 10 10 ASP A 289 MET A 293 5 5 HELIX 11 11 ASP B 53 VAL B 57 5 5 HELIX 12 12 VAL B 77 GLY B 88 1 12 HELIX 13 13 ALA B 108 GLY B 119 1 12 HELIX 14 14 ASP B 167 THR B 170 5 4 HELIX 15 15 SER B 178 ILE B 186 1 9 HELIX 16 16 MET B 195 SER B 203 1 9 HELIX 17 17 ASP B 233 PHE B 248 1 16 HELIX 18 18 MET B 249 GLY B 251 5 3 HELIX 19 19 GLY B 264 ALA B 277 1 14 HELIX 20 20 LYS B 278 GLU B 280 5 3 HELIX 21 21 ASP B 289 MET B 293 5 5 SHEET 1 A 2 LYS A 3 LEU A 7 0 SHEET 2 A 2 ILE A 120 ALA A 126 -1 O LEU A 123 N GLN A 4 SHEET 1 B 5 VAL A 11 VAL A 16 0 SHEET 2 B 5 LYS A 23 ARG A 29 -1 O LEU A 26 N ALA A 13 SHEET 3 B 5 ILE A 92 VAL A 96 -1 O GLU A 95 N THR A 27 SHEET 4 B 5 VAL A 37 ARG A 41 1 N ILE A 38 O ILE A 94 SHEET 5 B 5 VAL A 48 PRO A 51 -1 O VAL A 48 N ARG A 41 SHEET 1 C 2 LEU A 66 VAL A 67 0 SHEET 2 C 2 ARG A 73 ILE A 74 -1 O ILE A 74 N LEU A 66 SHEET 1 D 5 VAL A 136 ASP A 140 0 SHEET 2 D 5 LYS A 143 SER A 148 -1 O LEU A 147 N VAL A 136 SHEET 3 D 5 ILE A 254 TYR A 261 -1 O TYR A 261 N TRP A 144 SHEET 4 D 5 PHE A 153 THR A 158 1 N ARG A 154 O PHE A 258 SHEET 5 D 5 ARG A 172 ASP A 176 -1 O LEU A 175 N LEU A 155 SHEET 1 E 5 VAL A 136 ASP A 140 0 SHEET 2 E 5 LYS A 143 SER A 148 -1 O LEU A 147 N VAL A 136 SHEET 3 E 5 ILE A 254 TYR A 261 -1 O TYR A 261 N TRP A 144 SHEET 4 E 5 PHE A 129 LEU A 132 1 N LEU A 130 O ILE A 255 SHEET 5 E 5 TRP A 282 VAL A 285 -1 O GLU A 283 N ARG A 131 SHEET 1 F 2 PHE A 192 PHE A 194 0 SHEET 2 F 2 ILE A 216 VAL A 218 1 O VAL A 218 N GLY A 193 SHEET 1 G 2 LYS B 3 LEU B 7 0 SHEET 2 G 2 ILE B 120 ALA B 126 -1 O GLU B 121 N THR B 6 SHEET 1 H 5 VAL B 11 VAL B 16 0 SHEET 2 H 5 LYS B 23 PRO B 30 -1 O LEU B 26 N ALA B 13 SHEET 3 H 5 ILE B 92 VAL B 96 -1 O GLU B 95 N THR B 27 SHEET 4 H 5 VAL B 37 ARG B 41 1 N ILE B 38 O ILE B 94 SHEET 5 H 5 VAL B 48 PRO B 51 -1 O PHE B 50 N TYR B 39 SHEET 1 I 2 LEU B 66 VAL B 67 0 SHEET 2 I 2 ARG B 73 ILE B 74 -1 O ILE B 74 N LEU B 66 SHEET 1 J 5 VAL B 136 ASP B 140 0 SHEET 2 J 5 LYS B 143 SER B 148 -1 O ALA B 145 N VAL B 138 SHEET 3 J 5 ILE B 254 TYR B 261 -1 O ALA B 257 N SER B 148 SHEET 4 J 5 PHE B 153 THR B 158 1 N ARG B 154 O PHE B 258 SHEET 5 J 5 ARG B 172 ASP B 176 -1 O TYR B 173 N PHE B 157 SHEET 1 K 5 VAL B 136 ASP B 140 0 SHEET 2 K 5 LYS B 143 SER B 148 -1 O ALA B 145 N VAL B 138 SHEET 3 K 5 ILE B 254 TYR B 261 -1 O ALA B 257 N SER B 148 SHEET 4 K 5 PHE B 129 LEU B 132 1 N LEU B 130 O ILE B 255 SHEET 5 K 5 TRP B 282 VAL B 285 -1 O GLU B 283 N ARG B 131 SHEET 1 L 2 PHE B 192 PHE B 194 0 SHEET 2 L 2 ILE B 216 VAL B 218 1 O ILE B 216 N GLY B 193 LINK NE2 HIS A 79 ZN ZN A 307 1555 1555 2.13 LINK NE2 HIS A 238 ZN ZN A 307 1555 1555 2.16 LINK OD1 ASP A 242 ZN ZN A 307 1555 1555 2.09 LINK OD2 ASP A 242 ZN ZN A 307 1555 1555 2.61 LINK ZN ZN A 307 O22AC90 A 501 1555 1555 2.06 LINK ZN ZN A 307 O22BC90 A 501 1555 1555 2.09 LINK ZN ZN A 307 O24BC90 A 501 1555 1555 2.20 LINK ZN ZN A 307 O24AC90 A 501 1555 1555 2.21 LINK NE2 HIS B 79 ZN ZN B 307 1555 1555 2.14 LINK NE2 HIS B 238 ZN ZN B 307 1555 1555 2.14 LINK OD1 ASP B 242 ZN ZN B 307 1555 1555 2.09 LINK OD2 ASP B 242 ZN ZN B 307 1555 1555 2.67 LINK ZN ZN B 307 O22AC90 B 501 1555 1555 2.10 LINK ZN ZN B 307 O22BC90 B 501 1555 1555 2.13 LINK ZN ZN B 307 O24BC90 B 501 1555 1555 2.27 LINK ZN ZN B 307 O24AC90 B 501 1555 1555 2.28 CISPEP 1 ASN A 45 PRO A 46 0 2.49 CISPEP 2 ASN B 45 PRO B 46 0 -4.18 SITE 1 AC1 19 GLU A 78 HIS A 79 THR A 191 PHE A 192 SITE 2 AC1 19 MET A 195 ILE A 198 GLN A 202 CYS A 207 SITE 3 AC1 19 GLY A 210 SER A 211 VAL A 217 HIS A 238 SITE 4 AC1 19 ASP A 242 HIS A 265 ZN A 307 HOH A 366 SITE 5 AC1 19 HOH A 390 HOH A 400 HOH A 454 SITE 1 AC2 4 HIS A 79 HIS A 238 ASP A 242 C90 A 501 SITE 1 AC3 5 GLU A 134 GLU A 280 HOH A 451 GLU B 69 SITE 2 AC3 5 ASP B 220 SITE 1 AC4 17 GLU B 78 HIS B 79 THR B 191 PHE B 192 SITE 2 AC4 17 ILE B 198 GLN B 202 CYS B 207 GLY B 210 SITE 3 AC4 17 SER B 211 PHE B 212 VAL B 217 HIS B 238 SITE 4 AC4 17 ASP B 242 HIS B 265 ZN B 307 HOH B 363 SITE 5 AC4 17 HOH B 373 SITE 1 AC5 4 HIS B 79 HIS B 238 ASP B 242 C90 B 501 CRYST1 46.812 47.614 68.410 74.53 87.87 68.98 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021362 -0.008209 0.001492 0.00000 SCALE2 0.000000 0.022499 -0.006351 0.00000 SCALE3 0.000000 0.000000 0.015199 0.00000