PDB Short entry for 3OM0 HEADER MEMBRANE PROTEIN 26-AUG-10 3OM0 TITLE CRYSTAL STRUCTURE OF THE GLUK5 (KA2) ATD CRYSTALLOGRAPHIC DIMER AT 1.4 TITLE 2 ANGSTROM RESOLUTION CAVEAT 3OM0 BMA B 3 HAS WRONG CHIRALITY AT ATOM C2 BMA B 3 HAS WRONG CAVEAT 2 3OM0 CHIRALITY AT ATOM C3 BMA B 3 HAS WRONG CHIRALITY AT ATOM C5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTAMATE RECEPTOR KA-2, KA2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIK5; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 GNTI(-); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRK-IRES_EGFP KEYWDS MEMBRANE PROTEIN, ION CHANNEL EXPDTA X-RAY DIFFRACTION AUTHOR J.KUMAR,M.L.MAYER REVDAT 5 03-APR-24 3OM0 1 REMARK REVDAT 4 31-MAR-21 3OM0 1 SOURCE HETSYN REVDAT 3 29-JUL-20 3OM0 1 CAVEAT COMPND REMARK SEQADV REVDAT 3 2 1 HETNAM LINK SITE ATOM REVDAT 2 08-DEC-10 3OM0 1 JRNL REVDAT 1 03-NOV-10 3OM0 0 JRNL AUTH J.KUMAR,M.L.MAYER JRNL TITL CRYSTAL STRUCTURES OF THE GLUTAMATE RECEPTOR ION CHANNEL JRNL TITL 2 GLUK3 AND GLUK5 AMINO-TERMINAL DOMAINS. JRNL REF J.MOL.BIOL. V. 404 680 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20951142 JRNL DOI 10.1016/J.JMB.2010.10.006 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 TITL THE N-TERMINAL DOMAIN OF GLUR6-SUBTYPE GLUTAMATE RECEPTOR REMARK 1 TITL 2 ION CHANNELS. REMARK 1 REF NAT.STRUCT.MOL.BIOL. V. 16 631 2009 REMARK 1 REFN ISSN 1545-9993 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 76424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 3885 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8931 - 3.0170 0.99 7556 406 0.1694 0.1822 REMARK 3 2 3.0170 - 2.3950 1.00 7420 401 0.1668 0.1846 REMARK 3 3 2.3950 - 2.0923 1.00 7335 376 0.1663 0.1899 REMARK 3 4 2.0923 - 1.9010 0.99 7292 392 0.1686 0.1900 REMARK 3 5 1.9010 - 1.7648 0.99 7284 386 0.1806 0.2275 REMARK 3 6 1.7648 - 1.6607 0.99 7194 395 0.1899 0.2397 REMARK 3 7 1.6607 - 1.5776 0.98 7195 373 0.1810 0.2054 REMARK 3 8 1.5776 - 1.5089 0.98 7125 394 0.1961 0.2345 REMARK 3 9 1.5089 - 1.4508 0.98 7121 398 0.2221 0.2468 REMARK 3 10 1.4508 - 1.4007 0.96 7017 364 0.2704 0.2834 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.60 REMARK 3 SHRINKAGE RADIUS : 0.41 REMARK 3 K_SOL : 0.46 REMARK 3 B_SOL : 69.97 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40430 REMARK 3 B22 (A**2) : -1.44820 REMARK 3 B33 (A**2) : 1.85250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3233 REMARK 3 ANGLE : 1.594 4415 REMARK 3 CHIRALITY : 0.082 519 REMARK 3 PLANARITY : 0.008 560 REMARK 3 DIHEDRAL : 17.080 1279 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:107) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2239 13.4948 -13.4180 REMARK 3 T TENSOR REMARK 3 T11: 0.1488 T22: 0.1117 REMARK 3 T33: 0.1453 T12: -0.0385 REMARK 3 T13: 0.0493 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 1.9924 L22: 2.1941 REMARK 3 L33: 1.0687 L12: 1.2317 REMARK 3 L13: 0.7574 L23: 0.8832 REMARK 3 S TENSOR REMARK 3 S11: -0.0108 S12: 0.0051 S13: -0.1563 REMARK 3 S21: -0.1677 S22: 0.0663 S23: -0.2224 REMARK 3 S31: -0.0148 S32: -0.0167 S33: -0.0344 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 112:299) OR (CHAIN B AND RESID REMARK 3 1:3) OR (CHAIN E AND RESID 1) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9773 36.6240 -19.4400 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.1150 REMARK 3 T33: 0.1044 T12: -0.0265 REMARK 3 T13: 0.0059 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.5173 L22: 1.4872 REMARK 3 L33: 0.8759 L12: 0.1622 REMARK 3 L13: 0.1735 L23: -0.7973 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: 0.0453 S13: 0.0243 REMARK 3 S21: -0.0567 S22: -0.0763 S23: -0.1063 REMARK 3 S31: 0.0372 S32: 0.0588 S33: 0.0996 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 300:377) OR (CHAIN B AND RESID REMARK 3 4:5) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6009 24.1480 -4.5871 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.1370 REMARK 3 T33: 0.0861 T12: -0.0217 REMARK 3 T13: 0.0410 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.2420 L22: 1.1068 REMARK 3 L33: 0.9183 L12: 0.0969 REMARK 3 L13: 0.1099 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: 0.1382 S12: -0.1510 S13: 0.0501 REMARK 3 S21: 0.3333 S22: -0.1767 S23: 0.1254 REMARK 3 S31: 0.0314 S32: -0.1065 S33: 0.0470 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3OM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061284. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : SI 220 DOUBLE-CRYSTAL REMARK 200 MONOCHROMATO REMARK 200 OPTICS : DOUBLE-CRYSTAL SI(220) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77538 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.64500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OM0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES, 20% PEG 6K, PH 9.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.11250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.11250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 33.15700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.99350 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 33.15700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.99350 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.11250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 33.15700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.99350 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.11250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 33.15700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.99350 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.11250 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 ARG A 108 REMARK 465 LEU A 109 REMARK 465 GLN A 110 REMARK 465 TYR A 111 REMARK 465 ASP A 176 REMARK 465 ARG A 376 REMARK 465 THR A 377 REMARK 465 LEU A 378 REMARK 465 ALA A 379 REMARK 465 MET A 380 REMARK 465 ASN A 381 REMARK 465 ALA A 382 REMARK 465 THR A 383 REMARK 465 THR A 384 REMARK 465 LEU A 385 REMARK 465 ASP A 386 REMARK 465 ILE A 387 REMARK 465 LEU A 388 REMARK 465 GLU A 389 REMARK 465 LEU A 390 REMARK 465 VAL A 391 REMARK 465 PRO A 392 REMARK 465 ARG A 393 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 112 CG CD1 CD2 REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 794 O HOH A 806 5445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 300 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 300 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 63.13 -117.75 REMARK 500 ARG A 178 -75.28 -123.43 REMARK 500 ARG A 270 33.10 -92.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG B 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3H6G RELATED DB: PDB REMARK 900 GLUK2 (GLUR6) ATD DIMER REMARK 900 RELATED ID: 3H6H RELATED DB: PDB REMARK 900 GLUK2 (GLUR6) ATD DIMER REMARK 900 RELATED ID: 3OM1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUK5 (KA2) ATD DIMER AT 1.7 ANGSTROM REMARK 900 RESOLUTION REMARK 900 RELATED ID: 3OLZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUK3 (GLUR7) ATD DIMER AT 2.75 ANGSTROM REMARK 900 RESOLUTION DBREF 3OM0 A 1 387 UNP Q63273 GRIK5_RAT 20 406 SEQADV 3OM0 LEU A 388 UNP Q63273 EXPRESSION TAG SEQADV 3OM0 GLU A 389 UNP Q63273 EXPRESSION TAG SEQADV 3OM0 LEU A 390 UNP Q63273 EXPRESSION TAG SEQADV 3OM0 VAL A 391 UNP Q63273 EXPRESSION TAG SEQADV 3OM0 PRO A 392 UNP Q63273 EXPRESSION TAG SEQADV 3OM0 ARG A 393 UNP Q63273 EXPRESSION TAG SEQRES 1 A 393 VAL LEU SER SER LEU ARG MET ALA ALA ILE LEU ASP ASP SEQRES 2 A 393 GLN THR VAL CYS GLY ARG GLY GLU ARG LEU ALA LEU ALA SEQRES 3 A 393 LEU ALA ARG GLU GLN ILE ASN GLY ILE ILE GLU VAL PRO SEQRES 4 A 393 ALA LYS ALA ARG VAL GLU VAL ASP ILE PHE GLU LEU GLN SEQRES 5 A 393 ARG ASP SER GLN TYR GLU THR THR ASP THR MET CYS GLN SEQRES 6 A 393 ILE LEU PRO LYS GLY VAL VAL SER VAL LEU GLY PRO SER SEQRES 7 A 393 SER SER PRO ALA SER ALA SER THR VAL SER HIS ILE CYS SEQRES 8 A 393 GLY GLU LYS GLU ILE PRO HIS ILE LYS VAL GLY PRO GLU SEQRES 9 A 393 GLU THR PRO ARG LEU GLN TYR LEU ARG PHE ALA SER VAL SEQRES 10 A 393 SER LEU TYR PRO SER ASN GLU ASP VAL SER LEU ALA VAL SEQRES 11 A 393 SER ARG ILE LEU LYS SER PHE ASN TYR PRO SER ALA SER SEQRES 12 A 393 LEU ILE CYS ALA LYS ALA GLU CYS LEU LEU ARG LEU GLU SEQRES 13 A 393 GLU LEU VAL ARG GLY PHE LEU ILE SER LYS GLU THR LEU SEQRES 14 A 393 SER VAL ARG MET LEU ASP ASP SER ARG ASP PRO THR PRO SEQRES 15 A 393 LEU LEU LYS GLU ILE ARG ASP ASP LYS VAL SER THR ILE SEQRES 16 A 393 ILE ILE ASP ALA ASN ALA SER ILE SER HIS LEU VAL LEU SEQRES 17 A 393 ARG LYS ALA SER GLU LEU GLY MET THR SER ALA PHE TYR SEQRES 18 A 393 LYS TYR ILE LEU THR THR MET ASP PHE PRO ILE LEU HIS SEQRES 19 A 393 LEU ASP GLY ILE VAL GLU ASP SER SER ASN ILE LEU GLY SEQRES 20 A 393 PHE SER MET PHE ASN THR SER HIS PRO PHE TYR PRO GLU SEQRES 21 A 393 PHE VAL ARG SER LEU ASN MET SER TRP ARG GLU ASN CYS SEQRES 22 A 393 GLU ALA SER THR TYR PRO GLY PRO ALA LEU SER ALA ALA SEQRES 23 A 393 LEU MET PHE ASP ALA VAL HIS VAL VAL VAL SER ALA VAL SEQRES 24 A 393 ARG GLU LEU ASN ARG SER GLN GLU ILE GLY VAL LYS PRO SEQRES 25 A 393 LEU ALA CYS THR SER ALA ASN ILE TRP PRO HIS GLY THR SEQRES 26 A 393 SER LEU MET ASN TYR LEU ARG MET VAL GLU TYR ASP GLY SEQRES 27 A 393 LEU THR GLY ARG VAL GLU PHE ASN SER LYS GLY GLN ARG SEQRES 28 A 393 THR ASN TYR THR LEU ARG ILE LEU GLU LYS SER ARG GLN SEQRES 29 A 393 GLY HIS ARG GLU ILE GLY VAL TRP TYR SER ASN ARG THR SEQRES 30 A 393 LEU ALA MET ASN ALA THR THR LEU ASP ILE LEU GLU LEU SEQRES 31 A 393 VAL PRO ARG MODRES 3OM0 ASN A 200 ASN GLYCOSYLATION SITE MODRES 3OM0 ASN A 252 ASN GLYCOSYLATION SITE MODRES 3OM0 ASN A 266 ASN GLYCOSYLATION SITE MODRES 3OM0 ASN A 353 ASN GLYCOSYLATION SITE MODRES 3OM0 ASN A 303 ASN GLYCOSYLATION SITE HET NAG B 1 23 HET NAG B 2 26 HET BMA B 3 22 HET NAG A 397 27 HET NAG A 398 27 HET NAG A 399 27 HET NAG A 400 27 HET GOL A 401 14 HET GOL A 402 14 HET GOL A 403 14 HET ACT A 404 7 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 ACT C2 H3 O2 1- FORMUL 11 HOH *434(H2 O) HELIX 1 1 GLY A 20 ILE A 35 1 16 HELIX 2 2 SER A 55 LEU A 67 1 13 HELIX 3 3 PRO A 68 GLY A 70 5 3 HELIX 4 4 SER A 80 GLU A 95 1 16 HELIX 5 5 SER A 122 PHE A 137 1 16 HELIX 6 6 GLU A 150 LEU A 155 1 6 HELIX 7 7 LEU A 155 SER A 165 1 11 HELIX 8 8 PRO A 180 LYS A 191 1 12 HELIX 9 9 ASN A 200 LEU A 214 1 15 HELIX 10 10 ASP A 229 LEU A 233 5 5 HELIX 11 11 PHE A 257 ARG A 270 1 14 HELIX 12 12 GLU A 274 TYR A 278 5 5 HELIX 13 13 ALA A 282 ASN A 303 1 22 HELIX 14 14 HIS A 323 ARG A 332 1 10 SHEET 1 A 5 ARG A 43 GLU A 50 0 SHEET 2 A 5 SER A 4 LEU A 11 1 N LEU A 11 O PHE A 49 SHEET 3 A 5 VAL A 74 LEU A 75 1 O LEU A 75 N ILE A 10 SHEET 4 A 5 HIS A 98 LYS A 100 1 O ILE A 99 N VAL A 74 SHEET 5 A 5 VAL A 117 SER A 118 1 O VAL A 117 N LYS A 100 SHEET 1 B 7 LEU A 169 MET A 173 0 SHEET 2 B 7 ALA A 142 CYS A 146 1 N LEU A 144 O ARG A 172 SHEET 3 B 7 THR A 194 ASP A 198 1 O ILE A 196 N SER A 143 SHEET 4 B 7 LYS A 222 LEU A 225 1 O LYS A 222 N ILE A 195 SHEET 5 B 7 ILE A 245 SER A 249 1 O LEU A 246 N TYR A 223 SHEET 6 B 7 THR A 355 SER A 362 -1 O LEU A 359 N GLY A 247 SHEET 7 B 7 GLY A 365 TYR A 373 -1 O GLY A 370 N ILE A 358 SHEET 1 C 2 TYR A 336 GLY A 338 0 SHEET 2 C 2 GLY A 341 VAL A 343 -1 O VAL A 343 N TYR A 336 SSBOND 1 CYS A 17 CYS A 273 1555 1555 2.03 SSBOND 2 CYS A 64 CYS A 315 1555 1555 2.04 SSBOND 3 CYS A 146 CYS A 151 1555 1555 1.99 LINK ND2 ASN A 200 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 252 C1 NAG A 397 1555 1555 1.45 LINK ND2 ASN A 266 C1 NAG A 398 1555 1555 1.45 LINK ND2 ASN A 303 C1 NAG A 399 1555 1555 1.46 LINK ND2 ASN A 353 C1 NAG A 400 1555 1555 1.46 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 CISPEP 1 VAL A 38 PRO A 39 0 -6.42 CISPEP 2 GLY A 76 PRO A 77 0 2.08 CISPEP 3 THR A 106 PRO A 107 0 -0.58 CRYST1 66.314 101.987 116.225 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015080 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008604 0.00000