PDB Short entry for 3ORM HEADER TRANSFERASE 07-SEP-10 3ORM TITLE MYCOBACTERIUM TUBERCULOSIS PKNB KINASE DOMAIN D76A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 1 TO 308); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 419947; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MRA_0016, PKNB, PKNB (RV0014C); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21+; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KINASE KEYWDS 2 DOMAIN, SIGNAL TRANSDUCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ECHOLS,T.N.LOMBANA,T.ALBER,TB STRUCTURAL GENOMICS CONSORTIUM AUTHOR 2 (TBSGC) REVDAT 3 06-SEP-23 3ORM 1 REMARK SEQADV LINK REVDAT 2 06-FEB-13 3ORM 1 JRNL REMARK VERSN REVDAT 1 15-DEC-10 3ORM 0 JRNL AUTH T.N.LOMBANA,N.ECHOLS,M.C.GOOD,N.D.THOMSEN,H.L.NG, JRNL AUTH 2 A.E.GREENSTEIN,A.M.FALICK,D.S.KING,T.ALBER JRNL TITL ALLOSTERIC ACTIVATION MECHANISM OF THE MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS RECEPTOR SER/THR PROTEIN KINASE, PKNB. JRNL REF STRUCTURE V. 18 1667 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 21134645 JRNL DOI 10.1016/J.STR.2010.09.019 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.3 REMARK 3 NUMBER OF REFLECTIONS : 9801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.630 REMARK 3 FREE R VALUE TEST SET COUNT : 700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.0055 - 4.2640 0.96 3433 130 0.2008 0.3022 REMARK 3 2 4.2640 - 3.3898 0.89 3130 168 0.1869 0.2611 REMARK 3 3 3.3898 - 2.9628 0.84 2950 168 0.2196 0.2628 REMARK 3 4 2.9628 - 2.6927 0.71 2519 101 0.2653 0.3253 REMARK 3 5 2.6927 - 2.5000 0.67 2386 133 0.3092 0.3654 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.77 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 21.98 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.93710 REMARK 3 B22 (A**2) : -0.85400 REMARK 3 B33 (A**2) : 5.79120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2086 REMARK 3 ANGLE : 1.100 2852 REMARK 3 CHIRALITY : 0.053 328 REMARK 3 PLANARITY : 0.005 375 REMARK 3 DIHEDRAL : 18.152 790 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 10:96 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6692 22.9337 9.8537 REMARK 3 T TENSOR REMARK 3 T11: 0.3077 T22: 0.1512 REMARK 3 T33: 0.1400 T12: 0.0199 REMARK 3 T13: -0.0514 T23: 0.0469 REMARK 3 L TENSOR REMARK 3 L11: 1.2759 L22: 0.6832 REMARK 3 L33: 0.6907 L12: -0.8443 REMARK 3 L13: -0.4863 L23: 0.0668 REMARK 3 S TENSOR REMARK 3 S11: -0.0530 S12: 0.0158 S13: -0.0130 REMARK 3 S21: -0.4878 S22: 0.0603 S23: 0.2820 REMARK 3 S31: -0.2642 S32: -0.1901 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 97:289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1868 4.9315 23.1280 REMARK 3 T TENSOR REMARK 3 T11: 0.0401 T22: 0.0909 REMARK 3 T33: 0.0816 T12: -0.0762 REMARK 3 T13: -0.0005 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 2.4570 L22: 1.8658 REMARK 3 L33: 2.0674 L12: -0.4200 REMARK 3 L13: 0.7029 L23: -0.3843 REMARK 3 S TENSOR REMARK 3 S11: 0.0645 S12: -0.2362 S13: -0.1065 REMARK 3 S21: -0.1381 S22: 0.1036 S23: -0.1388 REMARK 3 S31: 0.0939 S32: -0.4061 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3ORM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061485. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : Y REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9801 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 67.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.324 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1MRU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 100MM BIS-TRIS PROPANE REMARK 280 PH 8.5, 200MM NAF, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.22900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.37300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.53800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.37300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.22900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.53800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: STRUCTURE IS OF A MONOMERIC MUTANT; THE WILD-TYPE PROTEIN REMARK 300 FORMS A DIMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 HIS A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 ASP A 9 REMARK 465 ASP A 165 REMARK 465 SER A 166 REMARK 465 GLY A 167 REMARK 465 ASN A 168 REMARK 465 SER A 169 REMARK 465 VAL A 170 REMARK 465 THR A 171 REMARK 465 GLN A 172 REMARK 465 THR A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 VAL A 176 REMARK 465 ILE A 177 REMARK 465 GLY A 178 REMARK 465 ASP A 290 REMARK 465 ALA A 291 REMARK 465 GLU A 292 REMARK 465 ARG A 293 REMARK 465 THR A 294 REMARK 465 SER A 295 REMARK 465 LEU A 296 REMARK 465 LEU A 297 REMARK 465 SER A 298 REMARK 465 SER A 299 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 GLY A 302 REMARK 465 ASN A 303 REMARK 465 LEU A 304 REMARK 465 SER A 305 REMARK 465 GLY A 306 REMARK 465 PRO A 307 REMARK 465 ARG A 308 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 SER A 51 OG REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 161 CG CD NE CZ NH1 NH2 REMARK 470 THR A 289 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 317 O HOH A 323 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN A 131 OE1 GLU A 260 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 77 -150.70 -134.64 REMARK 500 GLU A 81 46.75 -93.36 REMARK 500 THR A 82 159.43 -46.96 REMARK 500 ARG A 137 -14.11 95.31 REMARK 500 ASP A 138 31.69 -144.81 REMARK 500 ALA A 180 3.85 -150.20 REMARK 500 VAL A 229 78.23 -118.23 REMARK 500 ARG A 230 -46.72 164.99 REMARK 500 GLU A 241 -172.04 -66.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 341 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 156 OD2 REMARK 620 2 ASP A 156 OD1 53.1 REMARK 620 3 AGS A 340 O2B 82.3 87.7 REMARK 620 4 AGS A 340 S1G 107.7 156.2 74.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 341 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ORM RELATED DB: PDB REMARK 900 RELATED ID: 3ORO RELATED DB: PDB REMARK 900 RELATED ID: 3ORP RELATED DB: PDB REMARK 900 RELATED ID: 3ORT RELATED DB: PDB REMARK 900 RELATED ID: 1MRU RELATED DB: PDB REMARK 900 WILD-TYPE REMARK 900 RELATED ID: 1O6Y RELATED DB: PDB REMARK 900 WILD-TYPE REMARK 900 RELATED ID: 3ORI RELATED DB: PDB REMARK 900 L33D MUTANT REMARK 900 RELATED ID: 3ORK RELATED DB: PDB REMARK 900 L33D MUTANT REMARK 900 RELATED ID: 3ORL RELATED DB: PDB REMARK 900 L33D MUTANT DBREF 3ORM A 1 308 UNP A5TY84 A5TY84_MYCTA 1 308 SEQADV 3ORM GLY A -2 UNP A5TY84 EXPRESSION TAG SEQADV 3ORM SER A -1 UNP A5TY84 EXPRESSION TAG SEQADV 3ORM HIS A 0 UNP A5TY84 EXPRESSION TAG SEQADV 3ORM ALA A 76 UNP A5TY84 ASP 76 ENGINEERED MUTATION SEQRES 1 A 311 GLY SER HIS MET THR THR PRO SER HIS LEU SER ASP ARG SEQRES 2 A 311 TYR GLU LEU GLY GLU ILE LEU GLY PHE GLY GLY MET SER SEQRES 3 A 311 GLU VAL HIS LEU ALA ARG ASP LEU ARG LEU HIS ARG ASP SEQRES 4 A 311 VAL ALA VAL LYS VAL LEU ARG ALA ASP LEU ALA ARG ASP SEQRES 5 A 311 PRO SER PHE TYR LEU ARG PHE ARG ARG GLU ALA GLN ASN SEQRES 6 A 311 ALA ALA ALA LEU ASN HIS PRO ALA ILE VAL ALA VAL TYR SEQRES 7 A 311 ALA THR GLY GLU ALA GLU THR PRO ALA GLY PRO LEU PRO SEQRES 8 A 311 TYR ILE VAL MET GLU TYR VAL ASP GLY VAL THR LEU ARG SEQRES 9 A 311 ASP ILE VAL HIS THR GLU GLY PRO MET THR PRO LYS ARG SEQRES 10 A 311 ALA ILE GLU VAL ILE ALA ASP ALA CYS GLN ALA LEU ASN SEQRES 11 A 311 PHE SER HIS GLN ASN GLY ILE ILE HIS ARG ASP VAL LYS SEQRES 12 A 311 PRO ALA ASN ILE MET ILE SER ALA THR ASN ALA VAL LYS SEQRES 13 A 311 VAL MET ASP PHE GLY ILE ALA ARG ALA ILE ALA ASP SER SEQRES 14 A 311 GLY ASN SER VAL THR GLN THR ALA ALA VAL ILE GLY THR SEQRES 15 A 311 ALA GLN TYR LEU SER PRO GLU GLN ALA ARG GLY ASP SER SEQRES 16 A 311 VAL ASP ALA ARG SER ASP VAL TYR SER LEU GLY CYS VAL SEQRES 17 A 311 LEU TYR GLU VAL LEU THR GLY GLU PRO PRO PHE THR GLY SEQRES 18 A 311 ASP SER PRO VAL SER VAL ALA TYR GLN HIS VAL ARG GLU SEQRES 19 A 311 ASP PRO ILE PRO PRO SER ALA ARG HIS GLU GLY LEU SER SEQRES 20 A 311 ALA ASP LEU ASP ALA VAL VAL LEU LYS ALA LEU ALA LYS SEQRES 21 A 311 ASN PRO GLU ASN ARG TYR GLN THR ALA ALA GLU MET ARG SEQRES 22 A 311 ALA ASP LEU VAL ARG VAL HIS ASN GLY GLU PRO PRO GLU SEQRES 23 A 311 ALA PRO LYS VAL LEU THR ASP ALA GLU ARG THR SER LEU SEQRES 24 A 311 LEU SER SER ALA ALA GLY ASN LEU SER GLY PRO ARG HET AGS A 340 31 HET MN A 341 1 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETNAM MN MANGANESE (II) ION HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 2 AGS C10 H16 N5 O12 P3 S FORMUL 3 MN MN 2+ FORMUL 4 HOH *15(H2 O) HELIX 1 1 ALA A 44 ALA A 47 5 4 HELIX 2 2 ASP A 49 ALA A 64 1 16 HELIX 3 3 LEU A 100 GLY A 108 1 9 HELIX 4 4 THR A 111 ASN A 132 1 22 HELIX 5 5 LYS A 140 ALA A 142 5 3 HELIX 6 6 SER A 184 ARG A 189 1 6 HELIX 7 7 ASP A 194 GLY A 212 1 19 HELIX 8 8 SER A 220 VAL A 229 1 10 HELIX 9 9 PRO A 235 ARG A 239 5 5 HELIX 10 10 SER A 244 LEU A 255 1 12 HELIX 11 11 ASN A 258 ARG A 262 5 5 HELIX 12 12 THR A 265 ASN A 278 1 14 SHEET 1 A 5 TYR A 11 PHE A 19 0 SHEET 2 A 5 SER A 23 ASP A 30 -1 O LEU A 27 N GLY A 14 SHEET 3 A 5 ARG A 35 LEU A 42 -1 O VAL A 39 N HIS A 26 SHEET 4 A 5 LEU A 87 GLU A 93 -1 O ILE A 90 N LYS A 40 SHEET 5 A 5 VAL A 74 ALA A 76 -1 N TYR A 75 O VAL A 91 SHEET 1 B 5 TYR A 11 PHE A 19 0 SHEET 2 B 5 SER A 23 ASP A 30 -1 O LEU A 27 N GLY A 14 SHEET 3 B 5 ARG A 35 LEU A 42 -1 O VAL A 39 N HIS A 26 SHEET 4 B 5 LEU A 87 GLU A 93 -1 O ILE A 90 N LYS A 40 SHEET 5 B 5 GLU A 79 ALA A 80 -1 N ALA A 80 O LEU A 87 SHEET 1 C 3 GLY A 97 THR A 99 0 SHEET 2 C 3 ILE A 144 SER A 147 -1 O ILE A 146 N VAL A 98 SHEET 3 C 3 VAL A 152 VAL A 154 -1 O LYS A 153 N MET A 145 LINK OD2 ASP A 156 MN MN A 341 1555 1555 2.45 LINK OD1 ASP A 156 MN MN A 341 1555 1555 2.48 LINK O2B AGS A 340 MN MN A 341 1555 1555 2.14 LINK S1G AGS A 340 MN MN A 341 1555 1555 2.60 SITE 1 AC1 17 LEU A 17 GLY A 18 GLY A 20 GLY A 21 SITE 2 AC1 17 MET A 22 SER A 23 VAL A 25 LYS A 40 SITE 3 AC1 17 GLU A 93 VAL A 95 THR A 99 LYS A 140 SITE 4 AC1 17 ASN A 143 MET A 155 ASP A 156 HOH A 309 SITE 5 AC1 17 MN A 341 SITE 1 AC2 2 ASP A 156 AGS A 340 CRYST1 40.458 51.076 134.746 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024717 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007421 0.00000