PDB Short entry for 3ORP HEADER TRANSFERASE 07-SEP-10 3ORP TITLE MYCOBACTERIUM TUBERCULOSIS PKNB KINASE DOMAIN L33D MUTANT (CRYSTAL TITLE 2 FORM 5) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: KINASE DOMAIN (UNP RESIDUES 1 TO 308); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 419947; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MRA_0016, PKNB, PKNB (RV0014C); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS CONSORTIUM, TBSGC, KINASE KEYWDS 2 DOMAIN, SIGNAL TRANSDUCTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.C.GOOD,N.ECHOLS,T.N.LOMBANA,T.ALBER,TB STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (TBSGC) REVDAT 3 06-SEP-23 3ORP 1 REMARK REVDAT 2 06-OCT-21 3ORP 1 REMARK SEQADV REVDAT 1 15-DEC-10 3ORP 0 JRNL AUTH T.N.LOMBANA,N.ECHOLS,M.C.GOOD,N.D.THOMSEN,H.-L.NG, JRNL AUTH 2 A.E.GREENSTEIN,A.M.FALICK,D.S.KING,T.ALBER JRNL TITL ALLOSTERIC ACTIVATION MECHANISM OF THE MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS RECEPTOR SER/THR KINASE, PKNB JRNL REF STRUCTURE V. 18 1667 2010 JRNL REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 3 NUMBER OF REFLECTIONS : 16500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 881 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1627 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 63.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 87 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2101 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.87000 REMARK 3 B22 (A**2) : -0.72000 REMARK 3 B33 (A**2) : -3.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.498 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2178 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1971 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2974 ; 1.607 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4572 ; 0.851 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 272 ; 6.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;36.416 ;23.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;13.858 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;18.580 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2431 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 418 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 404 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1922 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1048 ; 0.173 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1221 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 98 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.201 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 43 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 7 ; 0.307 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1748 ; 1.058 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 547 ; 0.166 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2214 ; 1.188 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 904 ; 1.884 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 760 ; 2.910 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 47 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7879 23.8078 7.3523 REMARK 3 T TENSOR REMARK 3 T11: -0.1301 T22: -0.0784 REMARK 3 T33: -0.0623 T12: 0.0028 REMARK 3 T13: -0.0124 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.5226 L22: 4.5221 REMARK 3 L33: 4.0452 L12: -0.8445 REMARK 3 L13: -0.5221 L23: 3.0206 REMARK 3 S TENSOR REMARK 3 S11: -0.0471 S12: 0.0220 S13: 0.1449 REMARK 3 S21: -0.0668 S22: 0.0634 S23: -0.0160 REMARK 3 S31: -0.4222 S32: 0.0394 S33: -0.0164 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 5.3428 21.8349 10.8287 REMARK 3 T TENSOR REMARK 3 T11: -0.1609 T22: -0.0711 REMARK 3 T33: -0.0637 T12: 0.0328 REMARK 3 T13: -0.0107 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.5906 L22: 3.3120 REMARK 3 L33: 4.8189 L12: 0.3237 REMARK 3 L13: 2.7683 L23: 0.5101 REMARK 3 S TENSOR REMARK 3 S11: -0.1605 S12: -0.0468 S13: 0.0961 REMARK 3 S21: 0.2039 S22: 0.0564 S23: 0.0891 REMARK 3 S31: -0.5912 S32: -0.1361 S33: 0.1042 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 48 A 48 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6065 14.7572 -9.3972 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.2125 REMARK 3 T33: 0.0698 T12: -0.2582 REMARK 3 T13: -0.0062 T23: 0.0435 REMARK 3 L TENSOR REMARK 3 L11: 25.5145 L22: 59.6338 REMARK 3 L33: 179.7721 L12: 27.6192 REMARK 3 L13: -54.2449 L23:-102.4958 REMARK 3 S TENSOR REMARK 3 S11: -3.1319 S12: 3.7066 S13: 2.0481 REMARK 3 S21: -2.0365 S22: 3.6722 S23: 1.6430 REMARK 3 S31: 4.5518 S32: -2.4211 S33: -0.5403 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 155 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7032 11.2593 24.2507 REMARK 3 T TENSOR REMARK 3 T11: -0.1136 T22: -0.0628 REMARK 3 T33: -0.1088 T12: -0.0206 REMARK 3 T13: -0.0249 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.9270 L22: 1.9476 REMARK 3 L33: 3.5144 L12: -1.0219 REMARK 3 L13: 0.5524 L23: -0.8864 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.0824 S13: 0.1783 REMARK 3 S21: 0.3768 S22: -0.0513 S23: -0.1125 REMARK 3 S31: -0.2653 S32: 0.0830 S33: 0.0649 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 160 REMARK 3 ORIGIN FOR THE GROUP (A): 2.8949 10.1609 16.4403 REMARK 3 T TENSOR REMARK 3 T11: -0.0729 T22: 0.0109 REMARK 3 T33: -0.1124 T12: 0.0178 REMARK 3 T13: -0.0103 T23: 0.0667 REMARK 3 L TENSOR REMARK 3 L11: 21.0488 L22: 11.7291 REMARK 3 L33: 25.7725 L12: -3.7730 REMARK 3 L13: -10.9986 L23: 7.1824 REMARK 3 S TENSOR REMARK 3 S11: 0.2603 S12: 0.7619 S13: -0.6130 REMARK 3 S21: -0.5346 S22: -0.0432 S23: 0.4870 REMARK 3 S31: 1.4320 S32: -0.7064 S33: -0.2171 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 195 A 285 REMARK 3 ORIGIN FOR THE GROUP (A): 15.1060 -2.5835 28.7064 REMARK 3 T TENSOR REMARK 3 T11: -0.0444 T22: -0.1177 REMARK 3 T33: -0.0678 T12: 0.0045 REMARK 3 T13: -0.0297 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.3361 L22: 3.4453 REMARK 3 L33: 3.1103 L12: 0.3650 REMARK 3 L13: 0.6488 L23: -0.6959 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.0709 S13: -0.2112 REMARK 3 S21: 0.1259 S22: -0.0336 S23: -0.1826 REMARK 3 S31: 0.4140 S32: 0.0892 S33: 0.0079 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 286 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3247 -11.1458 37.9711 REMARK 3 T TENSOR REMARK 3 T11: 0.2274 T22: 0.0037 REMARK 3 T33: -0.0479 T12: -0.0337 REMARK 3 T13: -0.1206 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 27.1981 L22: 44.6669 REMARK 3 L33: 3.5044 L12: 8.5088 REMARK 3 L13: 0.4155 L23: -11.9917 REMARK 3 S TENSOR REMARK 3 S11: 1.3652 S12: -0.9195 S13: 0.7850 REMARK 3 S21: -0.6733 S22: -0.9206 S23: -1.3163 REMARK 3 S31: -0.8954 S32: 1.0439 S33: -0.4446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3ORP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000061488. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : Y REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16500 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.16300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 1MRU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1M SODIUM CITRATE, 100MM TRIS PH 7.0, REMARK 280 200MM NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.59250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.82600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.08200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.82600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.59250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.08200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 ARG A 161 REMARK 465 ALA A 162 REMARK 465 ILE A 163 REMARK 465 ALA A 164 REMARK 465 ASP A 165 REMARK 465 SER A 166 REMARK 465 GLY A 167 REMARK 465 ASN A 168 REMARK 465 SER A 169 REMARK 465 VAL A 170 REMARK 465 THR A 171 REMARK 465 GLN A 172 REMARK 465 THR A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 VAL A 176 REMARK 465 ALA A 291 REMARK 465 GLU A 292 REMARK 465 ARG A 293 REMARK 465 THR A 294 REMARK 465 SER A 295 REMARK 465 LEU A 296 REMARK 465 LEU A 297 REMARK 465 SER A 298 REMARK 465 SER A 299 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 GLY A 302 REMARK 465 ASN A 303 REMARK 465 LEU A 304 REMARK 465 SER A 305 REMARK 465 GLY A 306 REMARK 465 PRO A 307 REMARK 465 ARG A 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 2 O HOH A 394 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 2 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG A 262 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 144.86 -33.93 REMARK 500 ARG A 10 -39.03 -144.65 REMARK 500 GLU A 59 -85.91 -102.31 REMARK 500 ARG A 137 -17.67 86.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AGS A 340 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3ORI RELATED DB: PDB REMARK 900 RELATED ID: 3ORK RELATED DB: PDB REMARK 900 RELATED ID: 3ORL RELATED DB: PDB REMARK 900 RELATED ID: 3ORM RELATED DB: PDB REMARK 900 RELATED ID: 3ORO RELATED DB: PDB REMARK 900 RELATED ID: 3ORP RELATED DB: PDB REMARK 900 RELATED ID: 3ORT RELATED DB: PDB REMARK 900 RELATED ID: 1MRU RELATED DB: PDB REMARK 900 WILD-TYPE REMARK 900 RELATED ID: 1O6Y RELATED DB: PDB REMARK 900 WILD-TYPE DBREF 3ORP A 1 308 UNP A5TY84 A5TY84_MYCTA 1 308 SEQADV 3ORP GLY A -2 UNP A5TY84 EXPRESSION TAG SEQADV 3ORP SER A -1 UNP A5TY84 EXPRESSION TAG SEQADV 3ORP HIS A 0 UNP A5TY84 EXPRESSION TAG SEQADV 3ORP ASP A 33 UNP A5TY84 LEU 33 ENGINEERED MUTATION SEQRES 1 A 311 GLY SER HIS MET THR THR PRO SER HIS LEU SER ASP ARG SEQRES 2 A 311 TYR GLU LEU GLY GLU ILE LEU GLY PHE GLY GLY MET SER SEQRES 3 A 311 GLU VAL HIS LEU ALA ARG ASP LEU ARG ASP HIS ARG ASP SEQRES 4 A 311 VAL ALA VAL LYS VAL LEU ARG ALA ASP LEU ALA ARG ASP SEQRES 5 A 311 PRO SER PHE TYR LEU ARG PHE ARG ARG GLU ALA GLN ASN SEQRES 6 A 311 ALA ALA ALA LEU ASN HIS PRO ALA ILE VAL ALA VAL TYR SEQRES 7 A 311 ASP THR GLY GLU ALA GLU THR PRO ALA GLY PRO LEU PRO SEQRES 8 A 311 TYR ILE VAL MET GLU TYR VAL ASP GLY VAL THR LEU ARG SEQRES 9 A 311 ASP ILE VAL HIS THR GLU GLY PRO MET THR PRO LYS ARG SEQRES 10 A 311 ALA ILE GLU VAL ILE ALA ASP ALA CYS GLN ALA LEU ASN SEQRES 11 A 311 PHE SER HIS GLN ASN GLY ILE ILE HIS ARG ASP VAL LYS SEQRES 12 A 311 PRO ALA ASN ILE MET ILE SER ALA THR ASN ALA VAL LYS SEQRES 13 A 311 VAL MET ASP PHE GLY ILE ALA ARG ALA ILE ALA ASP SER SEQRES 14 A 311 GLY ASN SER VAL THR GLN THR ALA ALA VAL ILE GLY THR SEQRES 15 A 311 ALA GLN TYR LEU SER PRO GLU GLN ALA ARG GLY ASP SER SEQRES 16 A 311 VAL ASP ALA ARG SER ASP VAL TYR SER LEU GLY CYS VAL SEQRES 17 A 311 LEU TYR GLU VAL LEU THR GLY GLU PRO PRO PHE THR GLY SEQRES 18 A 311 ASP SER PRO VAL SER VAL ALA TYR GLN HIS VAL ARG GLU SEQRES 19 A 311 ASP PRO ILE PRO PRO SER ALA ARG HIS GLU GLY LEU SER SEQRES 20 A 311 ALA ASP LEU ASP ALA VAL VAL LEU LYS ALA LEU ALA LYS SEQRES 21 A 311 ASN PRO GLU ASN ARG TYR GLN THR ALA ALA GLU MET ARG SEQRES 22 A 311 ALA ASP LEU VAL ARG VAL HIS ASN GLY GLU PRO PRO GLU SEQRES 23 A 311 ALA PRO LYS VAL LEU THR ASP ALA GLU ARG THR SER LEU SEQRES 24 A 311 LEU SER SER ALA ALA GLY ASN LEU SER GLY PRO ARG HET AGS A 340 31 HETNAM AGS PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER HETSYN AGS ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); HETSYN 2 AGS ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'- HETSYN 3 AGS DIPHOSPHATE MONOTHIOPHOSPHATE FORMUL 2 AGS C10 H16 N5 O12 P3 S FORMUL 3 HOH *110(H2 O) HELIX 1 1 ALA A 44 ALA A 47 5 4 HELIX 2 2 ASP A 49 GLU A 59 1 11 HELIX 3 3 ALA A 60 ALA A 63 5 4 HELIX 4 4 LEU A 100 GLY A 108 1 9 HELIX 5 5 THR A 111 ASN A 132 1 22 HELIX 6 6 LYS A 140 ALA A 142 5 3 HELIX 7 7 THR A 179 LEU A 183 5 5 HELIX 8 8 SER A 184 ARG A 189 1 6 HELIX 9 9 ASP A 194 GLY A 212 1 19 HELIX 10 10 SER A 220 GLU A 231 1 12 HELIX 11 11 PRO A 235 HIS A 240 1 6 HELIX 12 12 SER A 244 LEU A 255 1 12 HELIX 13 13 ASN A 258 ARG A 262 5 5 HELIX 14 14 THR A 265 ASN A 278 1 14 SHEET 1 A 6 HIS A 6 LEU A 7 0 SHEET 2 A 6 TYR A 11 PHE A 19 -1 O TYR A 11 N LEU A 7 SHEET 3 A 6 SER A 23 ASP A 30 -1 O LEU A 27 N GLY A 14 SHEET 4 A 6 ARG A 35 LEU A 42 -1 O VAL A 39 N HIS A 26 SHEET 5 A 6 GLY A 85 GLU A 93 -1 O ILE A 90 N LYS A 40 SHEET 6 A 6 VAL A 74 THR A 82 -1 N ASP A 76 O VAL A 91 SHEET 1 B 3 GLY A 97 THR A 99 0 SHEET 2 B 3 ILE A 144 SER A 147 -1 O ILE A 146 N VAL A 98 SHEET 3 B 3 VAL A 152 VAL A 154 -1 O LYS A 153 N MET A 145 CISPEP 1 THR A 289 ASP A 290 0 28.76 SITE 1 AC1 25 GLY A 18 PHE A 19 GLY A 20 GLY A 21 SITE 2 AC1 25 MET A 22 SER A 23 VAL A 25 ALA A 38 SITE 3 AC1 25 LYS A 40 VAL A 72 MET A 92 GLU A 93 SITE 4 AC1 25 VAL A 95 THR A 99 LYS A 140 MET A 155 SITE 5 AC1 25 ASP A 156 ILE A 177 HOH A 341 HOH A 348 SITE 6 AC1 25 HOH A 351 HOH A 360 HOH A 377 HOH A 399 SITE 7 AC1 25 HOH A 401 CRYST1 39.185 52.164 155.652 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006425 0.00000