PDB Short entry for 3P42 HEADER UNKNOWN FUNCTION 05-OCT-10 3P42 TITLE STRUCTURE OF GFCC (YMCB), PROTEIN ENCODED BY THE E. COLI GROUP 4 TITLE 2 CAPSULE OPERON COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 22-248; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O127:H6; SOURCE 3 ORGANISM_TAXID: 574521; SOURCE 4 STRAIN: E2348/69; SOURCE 5 GENE: E2348C_0970, E2348_C_0970, GFCC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3) PLACI; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETBLUE2 KEYWDS BETA-GRASP, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR M.A.SAPER,K.SATHIYAMOORTHY REVDAT 4 08-NOV-17 3P42 1 REMARK REVDAT 3 29-JUN-11 3P42 1 JRNL REVDAT 2 15-JUN-11 3P42 1 JRNL REVDAT 1 06-APR-11 3P42 0 JRNL AUTH K.SATHIYAMOORTHY,E.MILLS,T.M.FRANZMANN,I.ROSENSHINE, JRNL AUTH 2 M.A.SAPER JRNL TITL THE CRYSTAL STRUCTURE OF ESCHERICHIA COLI GROUP 4 CAPSULE JRNL TITL 2 PROTEIN GFCC REVEALS A DOMAIN ORGANIZATION RESEMBLING THAT JRNL TITL 3 OF WZA. JRNL REF BIOCHEMISTRY V. 50 5465 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21449614 JRNL DOI 10.1021/BI101869H REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 140501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 7024 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.4997 - 4.1129 0.99 13506 682 0.1643 0.1872 REMARK 3 2 4.1129 - 3.2653 1.00 13483 727 0.1597 0.1984 REMARK 3 3 3.2653 - 2.8528 1.00 13523 728 0.1648 0.2182 REMARK 3 4 2.8528 - 2.5920 0.99 13503 708 0.1732 0.2176 REMARK 3 5 2.5920 - 2.4063 0.99 13476 720 0.1665 0.2189 REMARK 3 6 2.4063 - 2.2645 0.99 13344 734 0.1742 0.2424 REMARK 3 7 2.2645 - 2.1511 0.99 13407 665 0.1943 0.2702 REMARK 3 8 2.1511 - 2.0575 0.99 13421 726 0.1812 0.2273 REMARK 3 9 2.0575 - 1.9783 0.98 13237 673 0.2045 0.2651 REMARK 3 10 1.9783 - 1.9100 0.92 12577 661 0.2623 0.3138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.53 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 51.96 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.92260 REMARK 3 B22 (A**2) : 1.76010 REMARK 3 B33 (A**2) : 0.16250 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.45830 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7303 REMARK 3 ANGLE : 1.110 10026 REMARK 3 CHIRALITY : 0.068 1161 REMARK 3 PLANARITY : 0.005 1310 REMARK 3 DIHEDRAL : 13.444 2674 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 23:256) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6934 -0.3395 5.2368 REMARK 3 T TENSOR REMARK 3 T11: 0.1547 T22: 0.1028 REMARK 3 T33: 0.1564 T12: 0.0016 REMARK 3 T13: 0.0138 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 0.3202 L22: 0.2678 REMARK 3 L33: 1.3380 L12: -0.0493 REMARK 3 L13: -0.0743 L23: -0.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.0008 S12: -0.0040 S13: 0.0250 REMARK 3 S21: -0.0240 S22: 0.0701 S23: -0.0167 REMARK 3 S31: -0.1200 S32: -0.0290 S33: -0.0609 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESID 22:246) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5499 -6.8440 -22.7699 REMARK 3 T TENSOR REMARK 3 T11: 0.1613 T22: 0.2012 REMARK 3 T33: 0.1533 T12: 0.0092 REMARK 3 T13: -0.0023 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.4681 L22: 0.4013 REMARK 3 L33: 1.3268 L12: -0.1491 REMARK 3 L13: 0.4848 L23: -0.1033 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: 0.0654 S13: -0.0042 REMARK 3 S21: 0.0572 S22: -0.0253 S23: 0.0026 REMARK 3 S31: 0.1000 S32: 0.2716 S33: -0.0767 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESID 23:248) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8825 24.1802 7.9281 REMARK 3 T TENSOR REMARK 3 T11: 0.1148 T22: 0.1104 REMARK 3 T33: 0.1430 T12: 0.0165 REMARK 3 T13: 0.0047 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 0.7928 L22: 0.4094 REMARK 3 L33: 0.6924 L12: -0.0189 REMARK 3 L13: -0.0833 L23: -0.2403 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0002 S13: 0.0420 REMARK 3 S21: -0.0163 S22: 0.0141 S23: -0.0106 REMARK 3 S31: 0.0066 S32: 0.0464 S33: -0.0172 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESID 23:251) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2252 17.7373 24.6702 REMARK 3 T TENSOR REMARK 3 T11: 0.0864 T22: 0.2125 REMARK 3 T33: 0.1871 T12: 0.0224 REMARK 3 T13: 0.0010 T23: 0.0374 REMARK 3 L TENSOR REMARK 3 L11: 2.7119 L22: 0.3920 REMARK 3 L33: 0.2314 L12: -0.3569 REMARK 3 L13: -0.3593 L23: -0.2113 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: -0.5161 S13: -0.2492 REMARK 3 S21: 0.0542 S22: 0.0503 S23: 0.0771 REMARK 3 S31: -0.0098 S32: 0.0826 S33: 0.0728 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B AND RESI 31:35 REMARK 3 SELECTION : CHAIN D AND RESI 31:35 REMARK 3 ATOM PAIRS NUMBER : 70 REMARK 3 RMSD : 0.276 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT WAS WITH ANOMALOUS DATA, F+ REMARK 3 AND F- WERE REFINED AS SEPARATE REFLECTIONS. REMARK 4 REMARK 4 3P42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000061929. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : KOHZU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81677 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 49.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER (IN PHENIX) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M NACL, REMARK 280 0.1 M BIS-TRIS PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.99000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 21 REMARK 465 ALA A 22 REMARK 465 MSE B 21 REMARK 465 PRO B 247 REMARK 465 GLU B 248 REMARK 465 LEU B 249 REMARK 465 GLU B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 465 HIS B 256 REMARK 465 MSE C 21 REMARK 465 ALA C 22 REMARK 465 LEU C 249 REMARK 465 GLU C 250 REMARK 465 HIS C 251 REMARK 465 HIS C 252 REMARK 465 HIS C 253 REMARK 465 HIS C 254 REMARK 465 HIS C 255 REMARK 465 HIS C 256 REMARK 465 MSE D 21 REMARK 465 ALA D 22 REMARK 465 HIS D 252 REMARK 465 HIS D 253 REMARK 465 HIS D 254 REMARK 465 HIS D 255 REMARK 465 HIS D 256 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 256 CG ND1 CD2 CE1 NE2 REMARK 470 GLU C 248 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 422 O HOH C 343 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 128 137.82 81.75 REMARK 500 GLU A 250 92.15 -60.50 REMARK 500 GLN B 23 13.75 -149.80 REMARK 500 ASP B 121 109.82 -164.60 REMARK 500 ASP B 128 -168.76 73.91 REMARK 500 ARG C 55 -71.98 -31.82 REMARK 500 PRO D 117 36.75 -74.44 REMARK 500 ASP D 128 -178.56 90.07 REMARK 500 VAL D 136 -77.64 -114.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 2 DBREF 3P42 A 22 248 UNP B7UN63 B7UN63_ECO27 22 248 DBREF 3P42 B 22 248 UNP B7UN63 B7UN63_ECO27 22 248 DBREF 3P42 C 22 248 UNP B7UN63 B7UN63_ECO27 22 248 DBREF 3P42 D 22 248 UNP B7UN63 B7UN63_ECO27 22 248 SEQADV 3P42 MSE A 21 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 LEU A 249 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 GLU A 250 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS A 251 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS A 252 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS A 253 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS A 254 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS A 255 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS A 256 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 MSE B 21 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 LEU B 249 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 GLU B 250 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS B 251 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS B 252 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS B 253 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS B 254 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS B 255 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS B 256 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 MSE C 21 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 LEU C 249 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 GLU C 250 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS C 251 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS C 252 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS C 253 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS C 254 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS C 255 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS C 256 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 MSE D 21 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 LEU D 249 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 GLU D 250 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS D 251 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS D 252 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS D 253 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS D 254 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS D 255 UNP B7UN63 EXPRESSION TAG SEQADV 3P42 HIS D 256 UNP B7UN63 EXPRESSION TAG SEQRES 1 A 236 MSE ALA GLN GLY MSE VAL THR ILE TYR LEU PRO GLY GLU SEQRES 2 A 236 GLN GLN THR LEU SER VAL GLY PRO VAL GLU ASN VAL ALA SEQRES 3 A 236 GLN LEU VAL THR GLN PRO GLN LEU ARG ASP ARG LEU TRP SEQRES 4 A 236 TRP PRO GLY ALA LEU LEU THR ASP SER ALA ALA LYS ALA SEQRES 5 A 236 LYS ALA LEU LYS ASP TYR GLN HIS VAL MSE ALA GLN LEU SEQRES 6 A 236 ALA SER TRP GLU ALA GLU ALA ASP ASP ASP VAL ALA ALA SEQRES 7 A 236 THR ILE LYS SER VAL ARG GLN GLN LEU LEU ASN LEU ASN SEQRES 8 A 236 ILE THR GLY ARG LEU PRO VAL LYS LEU ASP PRO ASP PHE SEQRES 9 A 236 VAL ARG VAL ASP GLU ASN SER ASN PRO PRO LEU VAL GLY SEQRES 10 A 236 ASP TYR THR LEU TYR THR VAL GLN ARG PRO VAL THR ILE SEQRES 11 A 236 THR LEU LEU GLY ALA VAL SER GLY ALA GLY GLN LEU PRO SEQRES 12 A 236 TRP LEU ALA GLY ARG SER VAL THR ASP TYR LEU GLN ASP SEQRES 13 A 236 HIS PRO ARG LEU ALA GLY ALA ASP LYS ASN ASN VAL MSE SEQRES 14 A 236 VAL ILE THR PRO GLU GLY GLU THR VAL VAL ALA PRO VAL SEQRES 15 A 236 ALA LEU TRP ASN LYS ARG HIS VAL GLU PRO PRO PRO GLY SEQRES 16 A 236 SER GLN LEU TRP LEU GLY PHE SER ALA HIS VAL LEU PRO SEQRES 17 A 236 GLU LYS TYR ALA ASP LEU ASN ASP GLN ILE VAL SER VAL SEQRES 18 A 236 LEU THR GLN ARG VAL PRO GLU LEU GLU HIS HIS HIS HIS SEQRES 19 A 236 HIS HIS SEQRES 1 B 236 MSE ALA GLN GLY MSE VAL THR ILE TYR LEU PRO GLY GLU SEQRES 2 B 236 GLN GLN THR LEU SER VAL GLY PRO VAL GLU ASN VAL ALA SEQRES 3 B 236 GLN LEU VAL THR GLN PRO GLN LEU ARG ASP ARG LEU TRP SEQRES 4 B 236 TRP PRO GLY ALA LEU LEU THR ASP SER ALA ALA LYS ALA SEQRES 5 B 236 LYS ALA LEU LYS ASP TYR GLN HIS VAL MSE ALA GLN LEU SEQRES 6 B 236 ALA SER TRP GLU ALA GLU ALA ASP ASP ASP VAL ALA ALA SEQRES 7 B 236 THR ILE LYS SER VAL ARG GLN GLN LEU LEU ASN LEU ASN SEQRES 8 B 236 ILE THR GLY ARG LEU PRO VAL LYS LEU ASP PRO ASP PHE SEQRES 9 B 236 VAL ARG VAL ASP GLU ASN SER ASN PRO PRO LEU VAL GLY SEQRES 10 B 236 ASP TYR THR LEU TYR THR VAL GLN ARG PRO VAL THR ILE SEQRES 11 B 236 THR LEU LEU GLY ALA VAL SER GLY ALA GLY GLN LEU PRO SEQRES 12 B 236 TRP LEU ALA GLY ARG SER VAL THR ASP TYR LEU GLN ASP SEQRES 13 B 236 HIS PRO ARG LEU ALA GLY ALA ASP LYS ASN ASN VAL MSE SEQRES 14 B 236 VAL ILE THR PRO GLU GLY GLU THR VAL VAL ALA PRO VAL SEQRES 15 B 236 ALA LEU TRP ASN LYS ARG HIS VAL GLU PRO PRO PRO GLY SEQRES 16 B 236 SER GLN LEU TRP LEU GLY PHE SER ALA HIS VAL LEU PRO SEQRES 17 B 236 GLU LYS TYR ALA ASP LEU ASN ASP GLN ILE VAL SER VAL SEQRES 18 B 236 LEU THR GLN ARG VAL PRO GLU LEU GLU HIS HIS HIS HIS SEQRES 19 B 236 HIS HIS SEQRES 1 C 236 MSE ALA GLN GLY MSE VAL THR ILE TYR LEU PRO GLY GLU SEQRES 2 C 236 GLN GLN THR LEU SER VAL GLY PRO VAL GLU ASN VAL ALA SEQRES 3 C 236 GLN LEU VAL THR GLN PRO GLN LEU ARG ASP ARG LEU TRP SEQRES 4 C 236 TRP PRO GLY ALA LEU LEU THR ASP SER ALA ALA LYS ALA SEQRES 5 C 236 LYS ALA LEU LYS ASP TYR GLN HIS VAL MSE ALA GLN LEU SEQRES 6 C 236 ALA SER TRP GLU ALA GLU ALA ASP ASP ASP VAL ALA ALA SEQRES 7 C 236 THR ILE LYS SER VAL ARG GLN GLN LEU LEU ASN LEU ASN SEQRES 8 C 236 ILE THR GLY ARG LEU PRO VAL LYS LEU ASP PRO ASP PHE SEQRES 9 C 236 VAL ARG VAL ASP GLU ASN SER ASN PRO PRO LEU VAL GLY SEQRES 10 C 236 ASP TYR THR LEU TYR THR VAL GLN ARG PRO VAL THR ILE SEQRES 11 C 236 THR LEU LEU GLY ALA VAL SER GLY ALA GLY GLN LEU PRO SEQRES 12 C 236 TRP LEU ALA GLY ARG SER VAL THR ASP TYR LEU GLN ASP SEQRES 13 C 236 HIS PRO ARG LEU ALA GLY ALA ASP LYS ASN ASN VAL MSE SEQRES 14 C 236 VAL ILE THR PRO GLU GLY GLU THR VAL VAL ALA PRO VAL SEQRES 15 C 236 ALA LEU TRP ASN LYS ARG HIS VAL GLU PRO PRO PRO GLY SEQRES 16 C 236 SER GLN LEU TRP LEU GLY PHE SER ALA HIS VAL LEU PRO SEQRES 17 C 236 GLU LYS TYR ALA ASP LEU ASN ASP GLN ILE VAL SER VAL SEQRES 18 C 236 LEU THR GLN ARG VAL PRO GLU LEU GLU HIS HIS HIS HIS SEQRES 19 C 236 HIS HIS SEQRES 1 D 236 MSE ALA GLN GLY MSE VAL THR ILE TYR LEU PRO GLY GLU SEQRES 2 D 236 GLN GLN THR LEU SER VAL GLY PRO VAL GLU ASN VAL ALA SEQRES 3 D 236 GLN LEU VAL THR GLN PRO GLN LEU ARG ASP ARG LEU TRP SEQRES 4 D 236 TRP PRO GLY ALA LEU LEU THR ASP SER ALA ALA LYS ALA SEQRES 5 D 236 LYS ALA LEU LYS ASP TYR GLN HIS VAL MSE ALA GLN LEU SEQRES 6 D 236 ALA SER TRP GLU ALA GLU ALA ASP ASP ASP VAL ALA ALA SEQRES 7 D 236 THR ILE LYS SER VAL ARG GLN GLN LEU LEU ASN LEU ASN SEQRES 8 D 236 ILE THR GLY ARG LEU PRO VAL LYS LEU ASP PRO ASP PHE SEQRES 9 D 236 VAL ARG VAL ASP GLU ASN SER ASN PRO PRO LEU VAL GLY SEQRES 10 D 236 ASP TYR THR LEU TYR THR VAL GLN ARG PRO VAL THR ILE SEQRES 11 D 236 THR LEU LEU GLY ALA VAL SER GLY ALA GLY GLN LEU PRO SEQRES 12 D 236 TRP LEU ALA GLY ARG SER VAL THR ASP TYR LEU GLN ASP SEQRES 13 D 236 HIS PRO ARG LEU ALA GLY ALA ASP LYS ASN ASN VAL MSE SEQRES 14 D 236 VAL ILE THR PRO GLU GLY GLU THR VAL VAL ALA PRO VAL SEQRES 15 D 236 ALA LEU TRP ASN LYS ARG HIS VAL GLU PRO PRO PRO GLY SEQRES 16 D 236 SER GLN LEU TRP LEU GLY PHE SER ALA HIS VAL LEU PRO SEQRES 17 D 236 GLU LYS TYR ALA ASP LEU ASN ASP GLN ILE VAL SER VAL SEQRES 18 D 236 LEU THR GLN ARG VAL PRO GLU LEU GLU HIS HIS HIS HIS SEQRES 19 D 236 HIS HIS MODRES 3P42 MSE A 25 MET SELENOMETHIONINE MODRES 3P42 MSE A 82 MET SELENOMETHIONINE MODRES 3P42 MSE A 189 MET SELENOMETHIONINE MODRES 3P42 MSE B 25 MET SELENOMETHIONINE MODRES 3P42 MSE B 82 MET SELENOMETHIONINE MODRES 3P42 MSE B 189 MET SELENOMETHIONINE MODRES 3P42 MSE C 25 MET SELENOMETHIONINE MODRES 3P42 MSE C 82 MET SELENOMETHIONINE MODRES 3P42 MSE C 189 MET SELENOMETHIONINE MODRES 3P42 MSE D 25 MET SELENOMETHIONINE MODRES 3P42 MSE D 82 MET SELENOMETHIONINE MODRES 3P42 MSE D 189 MET SELENOMETHIONINE HET MSE A 25 17 HET MSE A 82 17 HET MSE A 189 17 HET MSE B 25 17 HET MSE B 82 17 HET MSE B 189 17 HET MSE C 25 17 HET MSE C 82 17 HET MSE C 189 17 HET MSE D 25 17 HET MSE D 82 17 HET MSE D 189 17 HET SO4 B 1 5 HET SO4 B 3 5 HET SO4 D 2 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *693(H2 O) HELIX 1 1 ASN A 44 THR A 50 1 7 HELIX 2 2 TRP A 59 ALA A 63 5 5 HELIX 3 3 ASP A 67 ALA A 92 1 26 HELIX 4 4 ASP A 93 LEU A 108 1 16 HELIX 5 5 GLU A 129 ASN A 132 5 4 HELIX 6 6 SER A 169 GLN A 175 1 7 HELIX 7 7 PRO A 228 ALA A 232 5 5 HELIX 8 8 ASP A 233 GLN A 244 1 12 HELIX 9 9 ARG A 245 GLU A 250 5 6 HELIX 10 10 ASN B 44 THR B 50 1 7 HELIX 11 11 TRP B 59 ALA B 63 5 5 HELIX 12 12 ASP B 67 ALA B 92 1 26 HELIX 13 13 ASP B 93 LEU B 108 1 16 HELIX 14 14 SER B 169 GLN B 175 1 7 HELIX 15 15 PRO B 228 ALA B 232 5 5 HELIX 16 16 ASP B 233 THR B 243 1 11 HELIX 17 17 ASN C 44 THR C 50 1 7 HELIX 18 18 TRP C 59 ALA C 63 5 5 HELIX 19 19 ASP C 67 ALA C 92 1 26 HELIX 20 20 ASP C 93 LEU C 108 1 16 HELIX 21 21 SER C 169 LEU C 174 1 6 HELIX 22 22 PRO C 228 ALA C 232 5 5 HELIX 23 23 ASP C 233 THR C 243 1 11 HELIX 24 24 ASN D 44 GLN D 51 1 8 HELIX 25 25 TRP D 59 ALA D 63 5 5 HELIX 26 26 ASP D 67 ALA D 92 1 26 HELIX 27 27 ASP D 93 LEU D 107 1 15 HELIX 28 28 SER D 169 GLN D 175 1 7 HELIX 29 29 PRO D 228 ALA D 232 5 5 HELIX 30 30 ASP D 233 GLN D 244 1 12 SHEET 1 A 4 THR A 36 VAL A 42 0 SHEET 2 A 4 GLY A 24 TYR A 29 -1 N VAL A 26 O VAL A 39 SHEET 3 A 4 GLY A 137 TYR A 142 1 O LEU A 141 N TYR A 29 SHEET 4 A 4 LEU A 64 THR A 66 -1 N LEU A 64 O TYR A 142 SHEET 1 B 2 ARG A 126 VAL A 127 0 SHEET 2 B 2 VAL B 210 GLU B 211 -1 O GLU B 211 N ARG A 126 SHEET 1 C 5 GLY A 160 PRO A 163 0 SHEET 2 C 5 THR A 149 GLY A 154 -1 N LEU A 152 O GLY A 160 SHEET 3 C 5 GLN A 217 LEU A 220 1 O LEU A 218 N LEU A 153 SHEET 4 C 5 ASN A 187 ILE A 191 -1 N MSE A 189 O TRP A 219 SHEET 5 C 5 THR A 197 PRO A 201 -1 O VAL A 198 N VAL A 190 SHEET 1 D 2 VAL A 210 GLU A 211 0 SHEET 2 D 2 ARG B 126 VAL B 127 -1 O ARG B 126 N GLU A 211 SHEET 1 E 4 LEU B 37 VAL B 42 0 SHEET 2 E 4 GLN B 23 TYR B 29 -1 N VAL B 26 O VAL B 39 SHEET 3 E 4 VAL B 136 TYR B 142 1 O LEU B 141 N THR B 27 SHEET 4 E 4 LEU B 64 THR B 66 -1 N LEU B 64 O TYR B 142 SHEET 1 F 5 GLY B 160 PRO B 163 0 SHEET 2 F 5 THR B 149 GLY B 154 -1 N LEU B 152 O GLY B 160 SHEET 3 F 5 GLN B 217 LEU B 220 1 O LEU B 218 N THR B 151 SHEET 4 F 5 ASN B 187 ILE B 191 -1 N ILE B 191 O GLN B 217 SHEET 5 F 5 THR B 197 PRO B 201 -1 O ALA B 200 N VAL B 188 SHEET 1 G 4 THR C 36 VAL C 42 0 SHEET 2 G 4 GLY C 24 TYR C 29 -1 N ILE C 28 O LEU C 37 SHEET 3 G 4 ASP C 138 TYR C 142 1 O LEU C 141 N THR C 27 SHEET 4 G 4 LEU C 64 THR C 66 -1 N LEU C 64 O TYR C 142 SHEET 1 H 2 ARG C 126 ASP C 128 0 SHEET 2 H 2 HIS D 209 GLU D 211 -1 O GLU D 211 N ARG C 126 SHEET 1 I 5 GLY C 160 PRO C 163 0 SHEET 2 I 5 THR C 149 GLY C 154 -1 N ILE C 150 O LEU C 162 SHEET 3 I 5 GLN C 217 LEU C 220 1 O LEU C 218 N THR C 151 SHEET 4 I 5 ASN C 187 ILE C 191 -1 N ILE C 191 O GLN C 217 SHEET 5 I 5 THR C 197 PRO C 201 -1 O ALA C 200 N VAL C 188 SHEET 1 J 2 VAL C 210 GLU C 211 0 SHEET 2 J 2 ARG D 126 VAL D 127 -1 O ARG D 126 N GLU C 211 SHEET 1 K 4 LEU D 37 VAL D 42 0 SHEET 2 K 4 GLY D 24 TYR D 29 -1 N ILE D 28 O LEU D 37 SHEET 3 K 4 ASP D 138 TYR D 142 1 O LEU D 141 N THR D 27 SHEET 4 K 4 LEU D 64 THR D 66 -1 N LEU D 64 O TYR D 142 SHEET 1 L 5 GLY D 160 PRO D 163 0 SHEET 2 L 5 THR D 149 GLY D 154 -1 N LEU D 152 O GLY D 160 SHEET 3 L 5 GLN D 217 LEU D 220 1 O LEU D 218 N THR D 151 SHEET 4 L 5 ASN D 187 ILE D 191 -1 N MSE D 189 O TRP D 219 SHEET 5 L 5 THR D 197 PRO D 201 -1 O VAL D 198 N VAL D 190 LINK C GLY A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N VAL A 26 1555 1555 1.32 LINK C VAL A 81 N MSE A 82 1555 1555 1.33 LINK C MSE A 82 N ALA A 83 1555 1555 1.33 LINK C VAL A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N VAL A 190 1555 1555 1.33 LINK C GLY B 24 N MSE B 25 1555 1555 1.33 LINK C MSE B 25 N VAL B 26 1555 1555 1.32 LINK C VAL B 81 N MSE B 82 1555 1555 1.33 LINK C MSE B 82 N ALA B 83 1555 1555 1.33 LINK C VAL B 188 N MSE B 189 1555 1555 1.33 LINK C MSE B 189 N VAL B 190 1555 1555 1.33 LINK C GLY C 24 N MSE C 25 1555 1555 1.33 LINK C MSE C 25 N VAL C 26 1555 1555 1.33 LINK C VAL C 81 N MSE C 82 1555 1555 1.33 LINK C MSE C 82 N ALA C 83 1555 1555 1.34 LINK C VAL C 188 N MSE C 189 1555 1555 1.33 LINK C MSE C 189 N VAL C 190 1555 1555 1.33 LINK C GLY D 24 N MSE D 25 1555 1555 1.33 LINK C MSE D 25 N VAL D 26 1555 1555 1.33 LINK C VAL D 81 N MSE D 82 1555 1555 1.33 LINK C MSE D 82 N ALA D 83 1555 1555 1.33 LINK C VAL D 188 N MSE D 189 1555 1555 1.33 LINK C MSE D 189 N VAL D 190 1555 1555 1.33 CISPEP 1 GLY A 40 PRO A 41 0 6.32 CISPEP 2 GLY B 40 PRO B 41 0 3.59 CISPEP 3 GLY C 40 PRO C 41 0 1.16 CISPEP 4 GLY D 40 PRO D 41 0 1.67 SITE 1 AC1 4 GLY B 137 ASP B 138 HOH B 260 HOH B 271 SITE 1 AC2 6 GLY A 182 LYS A 185 HOH A 315 LYS B 185 SITE 2 AC2 6 HOH B 290 HOH B 675 SITE 1 AC3 5 ALA C 181 GLY C 182 HOH C 625 GLY D 182 SITE 2 AC3 5 HOH D 614 CRYST1 68.831 99.980 69.020 90.00 91.74 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014528 0.000000 0.000441 0.00000 SCALE2 0.000000 0.010002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014495 0.00000