PDB Short entry for 3P57 HEADER TRANSFERASE/TRANSCRIPTION ACTIVATOR/DNA 08-OCT-10 3P57 TITLE CRYSTAL STRUCTURE OF THE P300 TAZ2 DOMAIN BOUND TO MEF2 ON DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOCYTE-SPECIFIC ENHANCER FACTOR 2A; COMPND 3 CHAIN: A, B, C, D, I, J; COMPND 4 FRAGMENT: N TERMINAL DOMAIN (UNP RESIDUES 2-91); COMPND 5 SYNONYM: SERUM RESPONSE FACTOR-LIKE PROTEIN 1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*A*AP*AP*CP*TP*AP*TP*TP*TP*AP*TP*AP*AP*GP*A)-3'); COMPND 9 CHAIN: E, G, K; COMPND 10 FRAGMENT: CH3 DOMAIN (UNP RESIDUES 1721-1837); COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 OTHER_DETAILS: MEF2 BINDING SITE; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'-D(*TP*TP*CP*TP*TP*AP*TP*AP*AP*AP*TP*AP*GP*TP*T)- COMPND 16 3'); COMPND 17 CHAIN: F, H, L; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: MEF2 BINDING SITE; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: HISTONE ACETYLTRANSFERASE P300; COMPND 22 CHAIN: P; COMPND 23 SYNONYM: P300 HAT, E1A-ASSOCIATED PROTEIN P300; COMPND 24 EC: 2.3.1.48; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MEF2, MEF2A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: CHEMICAL SYNTHESIS; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630; SOURCE 20 OTHER_DETAILS: CHEMICAL SYNTHESIS; SOURCE 21 MOL_ID: 4; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: EP300, P300; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION FACTOR, TRANSCRIPTIONAL KEYWDS 2 ACTIVATION, P300, ZINC FINGER, TRANSFERASE-TRANSCRIPTION ACTIVATOR- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.HE,J.YE,C.RIQUELME,J.O.LIU REVDAT 4 06-SEP-23 3P57 1 REMARK SEQADV LINK REVDAT 3 17-JUL-19 3P57 1 SOURCE REMARK REVDAT 2 08-NOV-17 3P57 1 REMARK REVDAT 1 10-AUG-11 3P57 0 JRNL AUTH J.HE,J.YE,Y.CAI,C.RIQUELME,J.O.LIU,X.LIU,A.HAN,L.CHEN JRNL TITL STRUCTURE OF P300 BOUND TO MEF2 ON DNA REVEALS A MECHANISM JRNL TITL 2 OF ENHANCEOSOME ASSEMBLY. JRNL REF NUCLEIC ACIDS RES. V. 39 4464 2011 JRNL REFN ISSN 0305-1048 JRNL PMID 21278418 JRNL DOI 10.1093/NAR/GKR030 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.040 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 49213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 4968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6685 - 6.7850 0.99 1670 175 0.1582 0.1637 REMARK 3 2 6.7850 - 5.3960 1.00 1592 183 0.1940 0.2678 REMARK 3 3 5.3960 - 4.7170 1.00 1595 166 0.1751 0.2031 REMARK 3 4 4.7170 - 4.2871 1.00 1553 177 0.1643 0.2103 REMARK 3 5 4.2871 - 3.9806 1.00 1561 168 0.1800 0.2188 REMARK 3 6 3.9806 - 3.7464 0.99 1554 176 0.1952 0.2386 REMARK 3 7 3.7464 - 3.5591 0.99 1511 181 0.1895 0.2723 REMARK 3 8 3.5591 - 3.4044 1.00 1529 182 0.2073 0.2496 REMARK 3 9 3.4044 - 3.2735 0.99 1517 185 0.2227 0.2546 REMARK 3 10 3.2735 - 3.1607 0.99 1536 174 0.2377 0.3080 REMARK 3 11 3.1607 - 3.0620 0.99 1509 183 0.2596 0.3099 REMARK 3 12 3.0620 - 2.9745 0.98 1502 177 0.2555 0.3150 REMARK 3 13 2.9745 - 2.8963 0.98 1484 189 0.2523 0.3202 REMARK 3 14 2.8963 - 2.8257 0.98 1531 157 0.2661 0.2970 REMARK 3 15 2.8257 - 2.7615 0.98 1481 170 0.2566 0.2949 REMARK 3 16 2.7615 - 2.7028 0.99 1503 175 0.2378 0.3459 REMARK 3 17 2.7028 - 2.6487 0.97 1512 151 0.2325 0.2845 REMARK 3 18 2.6487 - 2.5988 0.97 1485 147 0.2257 0.2908 REMARK 3 19 2.5988 - 2.5524 0.97 1472 159 0.2349 0.3321 REMARK 3 20 2.5524 - 2.5091 0.98 1505 153 0.2280 0.2645 REMARK 3 21 2.5091 - 2.4687 0.96 1465 168 0.2166 0.2729 REMARK 3 22 2.4687 - 2.4307 0.96 1470 157 0.2207 0.2872 REMARK 3 23 2.4307 - 2.3950 0.95 1461 147 0.2209 0.3108 REMARK 3 24 2.3950 - 2.3613 0.95 1455 165 0.2179 0.3050 REMARK 3 25 2.3613 - 2.3294 0.94 1435 158 0.2179 0.3174 REMARK 3 26 2.3294 - 2.2991 0.94 1413 179 0.2231 0.2840 REMARK 3 27 2.2991 - 2.2704 0.89 1334 150 0.2390 0.2902 REMARK 3 28 2.2704 - 2.2431 0.83 1294 143 0.3087 0.3822 REMARK 3 29 2.2431 - 2.2170 0.78 1155 146 0.2881 0.3554 REMARK 3 30 2.2170 - 2.1921 0.76 1161 127 0.2507 0.3577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 28.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.24430 REMARK 3 B22 (A**2) : -0.07680 REMARK 3 B33 (A**2) : 1.48760 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7362 REMARK 3 ANGLE : 1.324 10236 REMARK 3 CHIRALITY : 0.080 1147 REMARK 3 PLANARITY : 0.004 998 REMARK 3 DIHEDRAL : 21.607 2990 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JAN-11. REMARK 100 THE DEPOSITION ID IS D_1000061970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59524 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.06100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.70900 REMARK 200 R SYM FOR SHELL (I) : 0.66000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1EGW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG 1000, PH 6.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.42300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.40100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.46300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.40100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.42300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.46300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIDECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, I, J, E, F, G, H, REMARK 350 AND CHAINS: K, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DA E 1 REMARK 465 DT H 1 REMARK 465 LYS P 50 REMARK 465 ARG P 51 REMARK 465 LYS P 52 REMARK 465 THR P 53 REMARK 465 ASN P 54 REMARK 465 GLY P 55 REMARK 465 GLY P 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA E 2 P OP1 OP2 REMARK 470 DT H 2 P OP1 OP2 REMARK 470 DT H 5 O2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT E 5 O3' DT E 5 C3' -0.063 REMARK 500 DT L 7 O3' DT L 7 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA E 2 O4' - C4' - C3' ANGL. DEV. = -4.1 DEGREES REMARK 500 DC E 4 O4' - C1' - N1 ANGL. DEV. = -6.8 DEGREES REMARK 500 DT E 5 O5' - C5' - C4' ANGL. DEV. = -4.8 DEGREES REMARK 500 DT E 7 C5 - C4 - O4 ANGL. DEV. = -4.4 DEGREES REMARK 500 DA E 10 O4' - C1' - N9 ANGL. DEV. = -6.0 DEGREES REMARK 500 DT E 11 O4' - C1' - C2' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA F 6 O4' - C1' - N9 ANGL. DEV. = -4.8 DEGREES REMARK 500 DA F 9 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DT F 14 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F 15 C4' - C3' - C2' ANGL. DEV. = -4.5 DEGREES REMARK 500 DA G 1 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT G 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA G 6 O4' - C1' - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DA G 10 O4' - C1' - N9 ANGL. DEV. = -4.8 DEGREES REMARK 500 DG G 14 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA H 10 O4' - C1' - N9 ANGL. DEV. = -5.1 DEGREES REMARK 500 DT H 11 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT K 11 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DT L 1 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 DT L 1 N3 - C4 - O4 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT L 14 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 CYS P 74 CA - CB - SG ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 61 117.06 -32.32 REMARK 500 ASN B 73 54.27 -153.24 REMARK 500 LYS C 90 31.79 -94.34 REMARK 500 THR D 60 -168.59 -111.55 REMARK 500 THR I 60 -159.50 -143.73 REMARK 500 ASN I 73 56.10 -118.58 REMARK 500 THR J 60 -61.04 -130.83 REMARK 500 ASN P 30 42.45 -105.48 REMARK 500 GLN P 44 11.32 -67.06 REMARK 500 THR P 46 12.11 -68.11 REMARK 500 PRO P 58 108.84 -44.10 REMARK 500 HIS P 73 -8.99 -146.95 REMARK 500 PHE P 83 -12.23 75.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 120 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS P 22 NE2 REMARK 620 2 CYS P 26 SG 102.4 REMARK 620 3 CYS P 31 SG 104.1 110.9 REMARK 620 4 CYS P 36 SG 117.7 106.1 114.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 121 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS P 45 ND1 REMARK 620 2 CYS P 49 SG 81.7 REMARK 620 3 CYS P 57 SG 83.0 73.5 REMARK 620 4 CYS P 60 SG 96.3 106.2 179.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 122 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS P 70 NE2 REMARK 620 2 CYS P 74 SG 86.1 REMARK 620 3 CYS P 79 SG 111.7 51.5 REMARK 620 4 CYS P 84 SG 103.1 50.8 88.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN P 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN P 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN P 122 DBREF 3P57 A 2 91 UNP Q02078 MEF2A_HUMAN 2 91 DBREF 3P57 B 2 91 UNP Q02078 MEF2A_HUMAN 2 91 DBREF 3P57 C 2 91 UNP Q02078 MEF2A_HUMAN 2 91 DBREF 3P57 D 2 91 UNP Q02078 MEF2A_HUMAN 2 91 DBREF 3P57 I 2 91 UNP Q02078 MEF2A_HUMAN 2 91 DBREF 3P57 J 2 91 UNP Q02078 MEF2A_HUMAN 2 91 DBREF 3P57 P 4 113 UNP Q09472 EP300_HUMAN 1726 1835 DBREF 3P57 E 1 15 PDB 3P57 3P57 1 15 DBREF 3P57 G 1 15 PDB 3P57 3P57 1 15 DBREF 3P57 K 1 15 PDB 3P57 3P57 1 15 DBREF 3P57 F 1 15 PDB 3P57 3P57 1 15 DBREF 3P57 H 1 15 PDB 3P57 3P57 1 15 DBREF 3P57 L 1 15 PDB 3P57 3P57 1 15 SEQADV 3P57 HIS P 2 UNP Q09472 EXPRESSION TAG SEQADV 3P57 MET P 3 UNP Q09472 EXPRESSION TAG SEQRES 1 A 90 GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP GLU SEQRES 2 A 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 A 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 A 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN LYS SEQRES 5 A 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL LEU SEQRES 6 A 90 LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER ARG SEQRES 7 A 90 THR ASN SER ASP ILE VAL GLU ALA LEU ASN LYS LYS SEQRES 1 B 90 GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP GLU SEQRES 2 B 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 B 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 B 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN LYS SEQRES 5 B 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL LEU SEQRES 6 B 90 LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER ARG SEQRES 7 B 90 THR ASN SER ASP ILE VAL GLU ALA LEU ASN LYS LYS SEQRES 1 C 90 GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP GLU SEQRES 2 C 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 C 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 C 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN LYS SEQRES 5 C 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL LEU SEQRES 6 C 90 LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER ARG SEQRES 7 C 90 THR ASN SER ASP ILE VAL GLU ALA LEU ASN LYS LYS SEQRES 1 D 90 GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP GLU SEQRES 2 D 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 D 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 D 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN LYS SEQRES 5 D 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL LEU SEQRES 6 D 90 LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER ARG SEQRES 7 D 90 THR ASN SER ASP ILE VAL GLU ALA LEU ASN LYS LYS SEQRES 1 I 90 GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP GLU SEQRES 2 I 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 I 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 I 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN LYS SEQRES 5 I 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL LEU SEQRES 6 I 90 LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER ARG SEQRES 7 I 90 THR ASN SER ASP ILE VAL GLU ALA LEU ASN LYS LYS SEQRES 1 J 90 GLY ARG LYS LYS ILE GLN ILE THR ARG ILE MET ASP GLU SEQRES 2 J 90 ARG ASN ARG GLN VAL THR PHE THR LYS ARG LYS PHE GLY SEQRES 3 J 90 LEU MET LYS LYS ALA TYR GLU LEU SER VAL LEU CYS ASP SEQRES 4 J 90 CYS GLU ILE ALA LEU ILE ILE PHE ASN SER SER ASN LYS SEQRES 5 J 90 LEU PHE GLN TYR ALA SER THR ASP MET ASP LYS VAL LEU SEQRES 6 J 90 LEU LYS TYR THR GLU TYR ASN GLU PRO HIS GLU SER ARG SEQRES 7 J 90 THR ASN SER ASP ILE VAL GLU ALA LEU ASN LYS LYS SEQRES 1 E 15 DA DA DA DC DT DA DT DT DT DA DT DA DA SEQRES 2 E 15 DG DA SEQRES 1 F 15 DT DT DC DT DT DA DT DA DA DA DT DA DG SEQRES 2 F 15 DT DT SEQRES 1 G 15 DA DA DA DC DT DA DT DT DT DA DT DA DA SEQRES 2 G 15 DG DA SEQRES 1 H 15 DT DT DC DT DT DA DT DA DA DA DT DA DG SEQRES 2 H 15 DT DT SEQRES 1 K 15 DA DA DA DC DT DA DT DT DT DA DT DA DA SEQRES 2 K 15 DG DA SEQRES 1 L 15 DT DT DC DT DT DA DT DA DA DA DT DA DG SEQRES 2 L 15 DT DT SEQRES 1 P 112 HIS MET SER PRO GLY ASP SER ARG ARG LEU SER ILE GLN SEQRES 2 P 112 ARG CYS ILE GLN SER LEU VAL HIS ALA CYS GLN CYS ARG SEQRES 3 P 112 ASN ALA ASN CYS SER LEU PRO SER CYS GLN LYS MET LYS SEQRES 4 P 112 ARG VAL VAL GLN HIS THR LYS GLY CYS LYS ARG LYS THR SEQRES 5 P 112 ASN GLY GLY CYS PRO ILE CYS LYS GLN LEU ILE ALA LEU SEQRES 6 P 112 CYS CYS TYR HIS ALA LYS HIS CYS GLN GLU ASN LYS CYS SEQRES 7 P 112 PRO VAL PRO PHE CYS LEU ASN ILE LYS GLN LYS LEU ARG SEQRES 8 P 112 GLN GLN GLN LEU GLN HIS ARG LEU GLN GLN ALA GLN MET SEQRES 9 P 112 LEU ARG ARG ARG MET ALA SER MET HET ZN P 120 1 HET ZN P 121 1 HET ZN P 122 1 HETNAM ZN ZINC ION FORMUL 14 ZN 3(ZN 2+) FORMUL 17 HOH *262(H2 O) HELIX 1 1 ASP A 13 ASP A 40 1 28 HELIX 2 2 ASP A 61 TYR A 72 1 12 HELIX 3 3 THR A 80 LYS A 91 1 12 HELIX 4 4 ASP B 13 CYS B 39 1 27 HELIX 5 5 ASP B 61 GLU B 71 1 11 HELIX 6 6 THR B 80 LYS B 91 1 12 HELIX 7 7 ASP C 13 ASP C 40 1 28 HELIX 8 8 ASP C 61 TYR C 72 1 12 HELIX 9 9 THR C 80 LYS C 90 1 11 HELIX 10 10 ASP D 13 ASP D 40 1 28 HELIX 11 11 ASP D 61 TYR D 72 1 12 HELIX 12 12 THR D 80 LYS D 91 1 12 HELIX 13 13 ASP I 13 ASP I 40 1 28 HELIX 14 14 ASP I 61 GLU I 71 1 11 HELIX 15 15 THR I 80 LYS I 90 1 11 HELIX 16 16 ASP J 13 ASP J 40 1 28 HELIX 17 17 ASP J 61 TYR J 72 1 12 HELIX 18 18 THR J 80 LYS J 91 1 12 HELIX 19 19 SER P 4 CYS P 26 1 23 HELIX 20 20 SER P 35 GLN P 44 1 10 HELIX 21 21 ILE P 59 LYS P 72 1 14 HELIX 22 22 PHE P 83 MET P 113 1 31 SHEET 1 A 6 SER A 78 ARG A 79 0 SHEET 2 A 6 LEU B 54 ALA B 58 1 O GLN B 56 N ARG A 79 SHEET 3 A 6 GLU B 42 PHE B 48 -1 N LEU B 45 O TYR B 57 SHEET 4 A 6 GLU A 42 PHE A 48 -1 N ILE A 46 O ALA B 44 SHEET 5 A 6 LEU A 54 ALA A 58 -1 O TYR A 57 N LEU A 45 SHEET 6 A 6 GLU B 77 ARG B 79 1 O ARG B 79 N GLN A 56 SHEET 1 B 6 GLU C 77 ARG C 79 0 SHEET 2 B 6 LEU D 54 ALA D 58 1 O GLN D 56 N ARG C 79 SHEET 3 B 6 GLU D 42 PHE D 48 -1 N LEU D 45 O TYR D 57 SHEET 4 B 6 GLU C 42 PHE C 48 -1 N ALA C 44 O ILE D 46 SHEET 5 B 6 LEU C 54 ALA C 58 -1 O PHE C 55 N ILE C 47 SHEET 6 B 6 GLU D 77 ARG D 79 1 O ARG D 79 N GLN C 56 SHEET 1 C 6 SER I 78 ARG I 79 0 SHEET 2 C 6 LEU J 54 ALA J 58 1 O GLN J 56 N ARG I 79 SHEET 3 C 6 GLU J 42 PHE J 48 -1 N LEU J 45 O TYR J 57 SHEET 4 C 6 GLU I 42 PHE I 48 -1 N ALA I 44 O ILE J 46 SHEET 5 C 6 LEU I 54 ALA I 58 -1 O TYR I 57 N LEU I 45 SHEET 6 C 6 GLU J 77 ARG J 79 1 O GLU J 77 N GLN I 56 SSBOND 1 CYS P 74 CYS P 79 1555 1555 2.05 SSBOND 2 CYS P 74 CYS P 84 1555 1555 2.08 LINK NE2 HIS P 22 ZN ZN P 120 1555 1555 2.13 LINK SG CYS P 26 ZN ZN P 120 1555 1555 2.53 LINK SG CYS P 31 ZN ZN P 120 1555 1555 2.40 LINK SG CYS P 36 ZN ZN P 120 1555 1555 2.20 LINK ND1 HIS P 45 ZN ZN P 121 1555 1555 2.70 LINK SG CYS P 49 ZN ZN P 121 1555 1555 2.86 LINK SG CYS P 57 ZN ZN P 121 1555 1555 2.88 LINK SG CYS P 60 ZN ZN P 121 1555 1555 2.18 LINK NE2 HIS P 70 ZN ZN P 122 1555 1555 2.32 LINK SG CYS P 74 ZN ZN P 122 1555 1555 2.36 LINK SG CYS P 79 ZN ZN P 122 1555 1555 2.35 LINK SG CYS P 84 ZN ZN P 122 1555 1555 2.48 SITE 1 AC1 4 HIS P 22 CYS P 26 CYS P 31 CYS P 36 SITE 1 AC2 4 HIS P 45 CYS P 49 CYS P 57 CYS P 60 SITE 1 AC3 5 HIS P 70 CYS P 74 CYS P 79 VAL P 81 SITE 2 AC3 5 CYS P 84 CRYST1 74.846 90.926 144.802 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006906 0.00000