PDB Short entry for 3P8D HEADER PROTEIN BINDING 13-OCT-10 3P8D TITLE CRYSTAL STRUCTURE OF THE SECOND TUDOR DOMAIN OF HUMAN PHF20 (HOMODIMER TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEDULLOBLASTOMA ANTIGEN MU-MB-50.72; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 84-147; COMPND 5 SYNONYM: PHD FINGER PROTEIN 20; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTEV KEYWDS TUDOR DOMAIN, LYSINE-METHYLATED P53 BINDING, HISTONE BINDING, PROTEIN KEYWDS 2 BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.CUI,J.LEE,J.R.THOMPSON,M.V.BOTUYAN,G.MER REVDAT 3 26-SEP-12 3P8D 1 JRNL REVDAT 2 15-AUG-12 3P8D 1 JRNL VERSN REVDAT 1 22-JUN-11 3P8D 0 JRNL AUTH G.CUI,S.PARK,A.I.BADEAUX,D.KIM,J.LEE,J.R.THOMPSON,F.YAN, JRNL AUTH 2 S.KANEKO,Z.YUAN,M.V.BOTUYAN,M.T.BEDFORD,J.Q.CHENG,G.MER JRNL TITL PHF20 IS AN EFFECTOR PROTEIN OF P53 DOUBLE LYSINE JRNL TITL 2 METHYLATION THAT STABILIZES AND ACTIVATES P53. JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 916 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22864287 JRNL DOI 10.1038/NSMB.2353 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.1_357) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 14859 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 753 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.5400 - 3.4170 0.99 2870 135 0.1847 0.2090 REMARK 3 2 3.4170 - 2.7135 0.99 2838 148 0.2019 0.2352 REMARK 3 3 2.7135 - 2.3708 0.99 2805 158 0.2959 0.3593 REMARK 3 4 2.3708 - 2.1542 1.00 2851 154 0.2794 0.3706 REMARK 3 5 2.1542 - 2.0000 0.97 2742 158 0.3146 0.3559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 78.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.52010 REMARK 3 B22 (A**2) : -2.52010 REMARK 3 B33 (A**2) : 5.04030 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 912 REMARK 3 ANGLE : 0.654 1234 REMARK 3 CHIRALITY : 0.049 138 REMARK 3 PLANARITY : 0.002 154 REMARK 3 DIHEDRAL : 12.573 316 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (chain A and resid 25:29) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5338 -2.3582 -17.6074 REMARK 3 T TENSOR REMARK 3 T11: 0.9220 T22: 0.7486 REMARK 3 T33: 0.6020 T12: -0.0131 REMARK 3 T13: -0.1531 T23: -0.1606 REMARK 3 L TENSOR REMARK 3 L11: 0.3541 L22: 0.2508 REMARK 3 L33: 0.0445 L12: -0.3349 REMARK 3 L13: 0.0802 L23: -0.0908 REMARK 3 S TENSOR REMARK 3 S11: 1.9291 S12: 0.4283 S13: -1.1914 REMARK 3 S21: -0.9243 S22: -0.6527 S23: 0.5149 REMARK 3 S31: 3.2373 S32: -2.4777 S33: 0.0126 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (chain A and resid 30:35) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2324 -2.8300 -8.4939 REMARK 3 T TENSOR REMARK 3 T11: 0.7497 T22: 0.4427 REMARK 3 T33: 0.6905 T12: -0.1421 REMARK 3 T13: 0.0035 T23: -0.0491 REMARK 3 L TENSOR REMARK 3 L11: 0.5049 L22: 0.5343 REMARK 3 L33: 0.3185 L12: -0.3822 REMARK 3 L13: 0.1538 L23: -0.4600 REMARK 3 S TENSOR REMARK 3 S11: 0.2487 S12: -0.4236 S13: -1.5902 REMARK 3 S21: -0.1342 S22: -0.2065 S23: 0.8685 REMARK 3 S31: 0.9293 S32: -1.1935 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (chain A and resid 36:40) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6217 7.1522 -2.3348 REMARK 3 T TENSOR REMARK 3 T11: 0.3625 T22: 0.3854 REMARK 3 T33: 0.4818 T12: -0.0362 REMARK 3 T13: 0.0415 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 0.4442 L22: 0.4408 REMARK 3 L33: 0.5065 L12: 0.5022 REMARK 3 L13: 0.4904 L23: 0.5737 REMARK 3 S TENSOR REMARK 3 S11: 0.0745 S12: -0.9442 S13: -0.4668 REMARK 3 S21: 1.0122 S22: -0.0324 S23: 0.6650 REMARK 3 S31: 0.7220 S32: 0.4477 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (chain A and resid 41:44) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5760 0.9939 -2.6138 REMARK 3 T TENSOR REMARK 3 T11: 0.4484 T22: 0.4099 REMARK 3 T33: 0.4634 T12: 0.1019 REMARK 3 T13: 0.0050 T23: 0.0504 REMARK 3 L TENSOR REMARK 3 L11: 0.2113 L22: 1.0089 REMARK 3 L33: 0.7609 L12: -0.3628 REMARK 3 L13: -0.2642 L23: -0.0660 REMARK 3 S TENSOR REMARK 3 S11: -0.2917 S12: -1.1667 S13: -0.8129 REMARK 3 S21: 0.2224 S22: -0.0267 S23: -1.0815 REMARK 3 S31: 0.9743 S32: 0.9872 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (chain A and resid 45:50) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3874 2.0191 -9.6166 REMARK 3 T TENSOR REMARK 3 T11: 0.5457 T22: 0.6926 REMARK 3 T33: 0.4593 T12: -0.2410 REMARK 3 T13: -0.1034 T23: 0.1467 REMARK 3 L TENSOR REMARK 3 L11: 0.1674 L22: 0.3810 REMARK 3 L33: 0.2123 L12: -0.0141 REMARK 3 L13: -0.2118 L23: 0.2228 REMARK 3 S TENSOR REMARK 3 S11: -0.2158 S12: 0.7293 S13: 0.4771 REMARK 3 S21: 0.1134 S22: -0.1016 S23: 0.7098 REMARK 3 S31: 1.2242 S32: -1.3197 S33: 0.0006 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (chain A and resid 51:56) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6344 7.6490 -17.7239 REMARK 3 T TENSOR REMARK 3 T11: 0.4183 T22: 0.5544 REMARK 3 T33: 0.4414 T12: -0.0386 REMARK 3 T13: -0.0555 T23: 0.0686 REMARK 3 L TENSOR REMARK 3 L11: 0.3856 L22: -0.0790 REMARK 3 L33: 0.1882 L12: 0.0598 REMARK 3 L13: 0.3946 L23: 0.0191 REMARK 3 S TENSOR REMARK 3 S11: -0.0131 S12: -0.8765 S13: -0.6566 REMARK 3 S21: 0.0676 S22: -0.3671 S23: 0.3187 REMARK 3 S31: 0.3818 S32: 0.1176 S33: 0.0015 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (chain A and resid 57:61) REMARK 3 ORIGIN FOR THE GROUP (A): 3.1008 2.9747 -3.4333 REMARK 3 T TENSOR REMARK 3 T11: 0.4400 T22: 0.4232 REMARK 3 T33: 0.4736 T12: -0.0356 REMARK 3 T13: -0.0530 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.6346 L22: 0.4978 REMARK 3 L33: 0.8162 L12: 0.6217 REMARK 3 L13: 0.1561 L23: 0.4802 REMARK 3 S TENSOR REMARK 3 S11: 0.1818 S12: 0.0725 S13: -0.6491 REMARK 3 S21: 0.6259 S22: 0.4886 S23: 0.4240 REMARK 3 S31: 0.1652 S32: -0.8435 S33: -0.0034 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (chain A and resid 62:67) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8821 7.7661 -2.9272 REMARK 3 T TENSOR REMARK 3 T11: 0.3867 T22: 0.4173 REMARK 3 T33: 0.4977 T12: 0.0800 REMARK 3 T13: 0.0573 T23: 0.1106 REMARK 3 L TENSOR REMARK 3 L11: 0.4675 L22: 0.5367 REMARK 3 L33: 0.1984 L12: -0.1500 REMARK 3 L13: -0.1003 L23: 0.3542 REMARK 3 S TENSOR REMARK 3 S11: 0.3213 S12: 0.5460 S13: 0.1657 REMARK 3 S21: 0.2837 S22: -0.3560 S23: -0.1650 REMARK 3 S31: -1.2237 S32: 0.1381 S33: -0.0018 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (chain A and resid 68:71) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2040 5.7745 -16.0777 REMARK 3 T TENSOR REMARK 3 T11: 0.6337 T22: 0.6467 REMARK 3 T33: 0.4525 T12: -0.2069 REMARK 3 T13: -0.0430 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 0.6927 L22: 0.1902 REMARK 3 L33: 0.2449 L12: -0.3460 REMARK 3 L13: -0.2056 L23: -0.0074 REMARK 3 S TENSOR REMARK 3 S11: -0.8018 S12: 1.7634 S13: 0.6199 REMARK 3 S21: -1.6955 S22: 0.6652 S23: 0.1176 REMARK 3 S31: 1.8698 S32: -0.8097 S33: 0.0006 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (chain A and resid 72:77) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0883 -2.1838 -10.6369 REMARK 3 T TENSOR REMARK 3 T11: 0.8259 T22: 0.3387 REMARK 3 T33: 0.5013 T12: 0.0434 REMARK 3 T13: -0.0044 T23: -0.0912 REMARK 3 L TENSOR REMARK 3 L11: 1.4460 L22: 0.4689 REMARK 3 L33: 0.8439 L12: 0.1736 REMARK 3 L13: 0.5280 L23: 0.6527 REMARK 3 S TENSOR REMARK 3 S11: -0.7873 S12: 0.4502 S13: -0.9395 REMARK 3 S21: -0.3821 S22: 0.9464 S23: -1.0484 REMARK 3 S31: 2.2226 S32: -0.4344 S33: -0.0000 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (chain B and resid 25:30) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7946 22.5329 4.3303 REMARK 3 T TENSOR REMARK 3 T11: 0.7166 T22: 1.0352 REMARK 3 T33: 0.6611 T12: -0.2687 REMARK 3 T13: -0.2604 T23: -0.2058 REMARK 3 L TENSOR REMARK 3 L11: 0.8446 L22: 0.6596 REMARK 3 L33: 0.0985 L12: -0.7914 REMARK 3 L13: -0.2894 L23: 0.1182 REMARK 3 S TENSOR REMARK 3 S11: 0.0740 S12: -1.7249 S13: 1.9291 REMARK 3 S21: 0.2862 S22: 0.2206 S23: -2.0912 REMARK 3 S31: -1.5239 S32: 2.8325 S33: 0.0100 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (chain B and resid 31:36) REMARK 3 ORIGIN FOR THE GROUP (A): 25.6360 17.1429 -4.0941 REMARK 3 T TENSOR REMARK 3 T11: 0.3674 T22: 0.5936 REMARK 3 T33: 0.5298 T12: -0.0934 REMARK 3 T13: -0.0210 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 0.4422 L22: 0.8313 REMARK 3 L33: 1.0891 L12: -0.4721 REMARK 3 L13: -0.6019 L23: 0.1202 REMARK 3 S TENSOR REMARK 3 S11: 0.4730 S12: -0.5565 S13: 0.1041 REMARK 3 S21: -0.1255 S22: -0.5803 S23: -0.9149 REMARK 3 S31: -0.2437 S32: 0.7548 S33: 0.0001 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (chain B and resid 37:42) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0749 9.0862 -10.0193 REMARK 3 T TENSOR REMARK 3 T11: 0.3710 T22: 0.4173 REMARK 3 T33: 0.5029 T12: 0.0251 REMARK 3 T13: 0.0544 T23: 0.0661 REMARK 3 L TENSOR REMARK 3 L11: 0.4916 L22: 0.9349 REMARK 3 L33: 0.4958 L12: 0.6255 REMARK 3 L13: 0.4810 L23: 0.6090 REMARK 3 S TENSOR REMARK 3 S11: -0.1751 S12: 0.8834 S13: 0.4689 REMARK 3 S21: -1.1482 S22: 0.0071 S23: -1.2780 REMARK 3 S31: 0.2403 S32: 1.0857 S33: 0.0030 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (chain B and resid 43:48) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7191 19.9945 -6.9967 REMARK 3 T TENSOR REMARK 3 T11: 0.4338 T22: 0.5176 REMARK 3 T33: 0.4009 T12: -0.1176 REMARK 3 T13: 0.0173 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.5255 L22: 0.5500 REMARK 3 L33: 0.9281 L12: 0.3073 REMARK 3 L13: -0.0555 L23: -0.7426 REMARK 3 S TENSOR REMARK 3 S11: 0.1370 S12: 0.1007 S13: 0.5892 REMARK 3 S21: -0.0476 S22: -0.0416 S23: -0.3709 REMARK 3 S31: -0.8486 S32: 1.3945 S33: -0.0007 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (chain B and resid 49:54) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6150 24.5281 5.8488 REMARK 3 T TENSOR REMARK 3 T11: 0.6023 T22: 0.4693 REMARK 3 T33: 0.4848 T12: -0.1586 REMARK 3 T13: 0.0589 T23: -0.0524 REMARK 3 L TENSOR REMARK 3 L11: 0.0111 L22: 0.1190 REMARK 3 L33: 0.3081 L12: -0.0076 REMARK 3 L13: -0.0653 L23: 0.1541 REMARK 3 S TENSOR REMARK 3 S11: -0.2775 S12: 0.5067 S13: 0.1641 REMARK 3 S21: -1.3631 S22: 0.8250 S23: 0.8466 REMARK 3 S31: 0.0676 S32: 0.1120 S33: -0.0013 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (chain B and resid 55:61) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5485 21.0593 -5.3199 REMARK 3 T TENSOR REMARK 3 T11: 0.4678 T22: 0.4234 REMARK 3 T33: 0.3150 T12: -0.0120 REMARK 3 T13: 0.0682 T23: -0.0849 REMARK 3 L TENSOR REMARK 3 L11: 0.6549 L22: 1.1482 REMARK 3 L33: 0.5980 L12: 0.5643 REMARK 3 L13: 0.3375 L23: 0.0749 REMARK 3 S TENSOR REMARK 3 S11: 0.2716 S12: 0.0269 S13: 0.2274 REMARK 3 S21: 0.6407 S22: 0.0301 S23: 0.2693 REMARK 3 S31: -0.6911 S32: 0.2640 S33: 0.0006 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (chain B and resid 62:67) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5155 20.3747 -9.2567 REMARK 3 T TENSOR REMARK 3 T11: 0.4335 T22: 0.4299 REMARK 3 T33: 0.4488 T12: 0.0978 REMARK 3 T13: 0.0753 T23: 0.0391 REMARK 3 L TENSOR REMARK 3 L11: 0.6529 L22: 0.1557 REMARK 3 L33: 0.3682 L12: 0.3401 REMARK 3 L13: 0.3662 L23: 0.0605 REMARK 3 S TENSOR REMARK 3 S11: -0.2455 S12: 0.0559 S13: -0.1765 REMARK 3 S21: 0.3599 S22: 0.2253 S23: -0.3962 REMARK 3 S31: -0.5538 S32: -0.5713 S33: -0.0010 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (chain B and resid 68:71) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5430 15.2066 3.8289 REMARK 3 T TENSOR REMARK 3 T11: 0.5246 T22: 0.7309 REMARK 3 T33: 0.3887 T12: -0.1477 REMARK 3 T13: -0.0243 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 0.5892 L22: 0.7327 REMARK 3 L33: 0.3117 L12: -0.4590 REMARK 3 L13: 0.0587 L23: -0.3967 REMARK 3 S TENSOR REMARK 3 S11: 0.7770 S12: -2.8831 S13: 0.8602 REMARK 3 S21: 1.3308 S22: -0.7838 S23: 0.3977 REMARK 3 S31: -2.0139 S32: 1.3281 S33: -0.0008 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (chain B and resid 72:77) REMARK 3 ORIGIN FOR THE GROUP (A): 26.7397 13.4994 -1.6413 REMARK 3 T TENSOR REMARK 3 T11: 0.2675 T22: 0.9634 REMARK 3 T33: 0.5408 T12: -0.0170 REMARK 3 T13: -0.0719 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 0.8058 L22: 1.8620 REMARK 3 L33: 1.5575 L12: -0.5267 REMARK 3 L13: 1.0919 L23: 0.0791 REMARK 3 S TENSOR REMARK 3 S11: -0.2789 S12: 0.7132 S13: 1.0379 REMARK 3 S21: -0.0164 S22: 0.3645 S23: -1.1178 REMARK 3 S31: -0.2456 S32: 2.0001 S33: -0.0013 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3P8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB062084. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.992349 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 23.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG8000, 0.1 M TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.07450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.11175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.03725 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 81 REMARK 465 HIS A 82 REMARK 465 MET A 83 REMARK 465 SER A 84 REMARK 465 LYS A 138 REMARK 465 ASP A 139 REMARK 465 GLN A 140 REMARK 465 ASN A 141 REMARK 465 ILE A 142 REMARK 465 VAL A 143 REMARK 465 GLY A 144 REMARK 465 ASN A 145 REMARK 465 ALA A 146 REMARK 465 ARG A 147 REMARK 465 GLY B 81 REMARK 465 HIS B 82 REMARK 465 MET B 83 REMARK 465 SER B 84 REMARK 465 LYS B 138 REMARK 465 ASP B 139 REMARK 465 GLN B 140 REMARK 465 ASN B 141 REMARK 465 ILE B 142 REMARK 465 VAL B 143 REMARK 465 GLY B 144 REMARK 465 ASN B 145 REMARK 465 ALA B 146 REMARK 465 ARG B 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 86 132.96 54.29 REMARK 500 ASN A 90 -13.50 74.78 REMARK 500 GLU B 86 127.35 52.82 REMARK 500 ASN B 90 -7.41 71.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 2 DISTANCE = 5.50 ANGSTROMS DBREF 3P8D A 84 147 UNP Q7Z5E2 Q7Z5E2_HUMAN 84 147 DBREF 3P8D B 84 147 UNP Q7Z5E2 Q7Z5E2_HUMAN 84 147 SEQADV 3P8D GLY A 81 UNP Q7Z5E2 EXPRESSION TAG SEQADV 3P8D HIS A 82 UNP Q7Z5E2 EXPRESSION TAG SEQADV 3P8D MET A 83 UNP Q7Z5E2 EXPRESSION TAG SEQADV 3P8D GLY B 81 UNP Q7Z5E2 EXPRESSION TAG SEQADV 3P8D HIS B 82 UNP Q7Z5E2 EXPRESSION TAG SEQADV 3P8D MET B 83 UNP Q7Z5E2 EXPRESSION TAG SEQRES 1 A 67 GLY HIS MET SER SER GLU PHE GLN ILE ASN GLU GLN VAL SEQRES 2 A 67 LEU ALA CYS TRP SER ASP CYS ARG PHE TYR PRO ALA LYS SEQRES 3 A 67 VAL THR ALA VAL ASN LYS ASP GLY THR TYR THR VAL LYS SEQRES 4 A 67 PHE TYR ASP GLY VAL VAL GLN THR VAL LYS HIS ILE HIS SEQRES 5 A 67 VAL LYS ALA PHE SER LYS ASP GLN ASN ILE VAL GLY ASN SEQRES 6 A 67 ALA ARG SEQRES 1 B 67 GLY HIS MET SER SER GLU PHE GLN ILE ASN GLU GLN VAL SEQRES 2 B 67 LEU ALA CYS TRP SER ASP CYS ARG PHE TYR PRO ALA LYS SEQRES 3 B 67 VAL THR ALA VAL ASN LYS ASP GLY THR TYR THR VAL LYS SEQRES 4 B 67 PHE TYR ASP GLY VAL VAL GLN THR VAL LYS HIS ILE HIS SEQRES 5 B 67 VAL LYS ALA PHE SER LYS ASP GLN ASN ILE VAL GLY ASN SEQRES 6 B 67 ALA ARG FORMUL 3 HOH *147(H2 O) SHEET 1 A 5 VAL A 125 LYS A 129 0 SHEET 2 A 5 THR A 115 PHE A 120 -1 N TYR A 116 O VAL A 128 SHEET 3 A 5 PHE A 102 VAL A 110 -1 N THR A 108 O THR A 117 SHEET 4 A 5 GLN A 92 CYS A 96 -1 N ALA A 95 O TYR A 103 SHEET 5 A 5 VAL A 133 ALA A 135 -1 O LYS A 134 N LEU A 94 SHEET 1 B 5 VAL B 125 LYS B 129 0 SHEET 2 B 5 THR B 115 PHE B 120 -1 N TYR B 116 O VAL B 128 SHEET 3 B 5 PHE B 102 VAL B 110 -1 N THR B 108 O THR B 117 SHEET 4 B 5 GLN B 92 CYS B 96 -1 N ALA B 95 O TYR B 103 SHEET 5 B 5 VAL B 133 LYS B 134 -1 O LYS B 134 N LEU B 94 SSBOND 1 CYS A 96 CYS B 100 1555 1555 2.03 SSBOND 2 CYS A 100 CYS B 96 1555 1555 2.03 CRYST1 48.548 48.548 96.149 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020598 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010401 0.00000