PDB Short entry for 3PE7 HEADER LYASE 25-OCT-10 3PE7 TITLE OLIGOGALACTURONATE LYASE IN COMPLEX WITH MANGANESE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGOGALACTURONATE LYASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA ENTEROCOLITICA SUBSP. ENTEROCOLITICA; SOURCE 3 ORGANISM_TAXID: 393305; SOURCE 4 STRAIN: 8081; SOURCE 5 GENE: OGL, YE1876; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS SEVEN-BLADED BETA-PROPELLER, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.W.ABBOTT,H.J.GILBERT,A.B.BORASTON REVDAT 3 06-SEP-23 3PE7 1 REMARK LINK REVDAT 2 27-APR-11 3PE7 1 JRNL REVDAT 1 03-NOV-10 3PE7 0 JRNL AUTH D.W.ABBOTT,H.J.GILBERT,A.B.BORASTON JRNL TITL THE ACTIVE SITE OF OLIGOGALACTURONATE LYASE PROVIDES UNIQUE JRNL TITL 2 INSIGHTS INTO CYTOPLASMIC OLIGOGALACTURONATE JRNL TITL 3 BETA-ELIMINATION. JRNL REF J.BIOL.CHEM. V. 285 39029 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20851883 JRNL DOI 10.1074/JBC.M110.153981 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 44824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2688 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3019 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 477 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.65000 REMARK 3 B22 (A**2) : -1.08000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.795 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3113 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4235 ; 1.249 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 374 ; 6.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;36.728 ;24.038 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 487 ;12.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;17.543 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2440 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1878 ; 0.645 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3034 ; 1.192 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1235 ; 1.917 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1201 ; 3.046 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3PE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44824 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 3C5M REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.32500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.25500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.75500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.25500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.32500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.75500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 305 REMARK 465 VAL A 306 REMARK 465 ASP A 307 REMARK 465 VAL A 308 REMARK 465 GLN A 309 REMARK 465 ASP A 310 REMARK 465 ASP A 311 REMARK 465 SER A 312 REMARK 465 GLY A 313 REMARK 465 TYR A 314 REMARK 465 LYS A 315 REMARK 465 ILE A 316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 79 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N GLU A 317 O HOH A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 187 58.26 -90.48 REMARK 500 LEU A 274 17.92 56.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 390 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 1 O REMARK 620 2 ASP A 57 OD1 76.6 REMARK 620 3 HOH A 589 O 89.4 86.4 REMARK 620 4 HOH A 599 O 73.0 148.9 86.9 REMARK 620 5 HOH A 668 O 91.2 92.4 178.4 94.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 391 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 270 OD1 REMARK 620 2 ASP A 270 OD2 49.7 REMARK 620 3 GLU A 272 OE2 103.8 73.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 389 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 287 NE2 REMARK 620 2 GLN A 350 OE1 178.6 REMARK 620 3 HIS A 353 ND1 94.7 86.1 REMARK 620 4 HIS A 355 NE2 90.4 88.2 105.2 REMARK 620 5 ACT A 392 OXT 89.2 90.5 158.1 96.3 REMARK 620 6 ACT A 392 O 88.8 92.3 96.6 158.2 61.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 389 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 390 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 392 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 393 DBREF 3PE7 A 1 388 UNP A1JMA5 A1JMA5_YERE8 1 388 SEQRES 1 A 388 MET ALA LYS GLY LYS GLN ILE PRO LEU THR PHE ASP THR SEQRES 2 A 388 TYR GLN ASP ALA SER THR GLY ALA GLN VAL THR ARG LEU SEQRES 3 A 388 THR PRO PRO ASP VAL THR CYS HIS ARG ASN TYR PHE TYR SEQRES 4 A 388 GLN LYS CYS PHE THR ARG ASP GLY SER LYS LEU LEU PHE SEQRES 5 A 388 GLY GLY ALA PHE ASP GLY PRO TRP ASN TYR TYR LEU LEU SEQRES 6 A 388 ASP LEU ASN THR GLN VAL ALA THR GLN LEU THR GLU GLY SEQRES 7 A 388 ARG GLY ASP ASN THR PHE GLY GLY PHE LEU SER PRO ASP SEQRES 8 A 388 ASP ASP ALA LEU PHE TYR VAL LYS ASP GLY ARG ASN LEU SEQRES 9 A 388 MET ARG VAL ASP LEU ALA THR LEU GLU GLU ASN VAL VAL SEQRES 10 A 388 TYR GLN VAL PRO ALA GLU TRP VAL GLY TYR GLY THR TRP SEQRES 11 A 388 VAL ALA ASN SER ASP CYS THR LYS LEU VAL GLY ILE GLU SEQRES 12 A 388 ILE ARG ARG GLU ASP TRP VAL PRO LEU THR ASP TRP LYS SEQRES 13 A 388 LYS PHE HIS GLU PHE TYR PHE THR LYS PRO CYS CYS ARG SEQRES 14 A 388 LEU MET ARG VAL ASP LEU LYS THR GLY GLU SER THR VAL SEQRES 15 A 388 ILE LEU GLN GLU ASN GLN TRP LEU GLY HIS PRO ILE TYR SEQRES 16 A 388 ARG PRO TYR ASP ASP SER THR VAL ALA PHE CYS HIS GLU SEQRES 17 A 388 GLY PRO HIS ASP LEU VAL ASP ALA ARG MET TRP LEU ILE SEQRES 18 A 388 ASN GLU ASP GLY THR ASN MET ARG LYS VAL LYS THR HIS SEQRES 19 A 388 ALA GLU GLY GLU SER CYS THR HIS GLU PHE TRP VAL PRO SEQRES 20 A 388 ASP GLY SER ALA LEU VAL TYR VAL SER TYR LEU LYS GLY SEQRES 21 A 388 SER PRO ASP ARG PHE ILE TYR SER ALA ASP PRO GLU THR SEQRES 22 A 388 LEU GLU ASN ARG GLN LEU THR SER MET PRO ALA CYS SER SEQRES 23 A 388 HIS LEU MET SER ASN TYR ASP GLY SER LEU MET VAL GLY SEQRES 24 A 388 ASP GLY SER ASP ALA PRO VAL ASP VAL GLN ASP ASP SER SEQRES 25 A 388 GLY TYR LYS ILE GLU ASN ASP PRO PHE LEU TYR VAL PHE SEQRES 26 A 388 ASN MET LYS ASN GLY THR GLN HIS ARG VAL ALA ARG HIS SEQRES 27 A 388 ASP THR SER TRP LYS VAL PHE GLU GLY ASP ARG GLN VAL SEQRES 28 A 388 THR HIS PRO HIS PRO SER PHE THR PRO ASP ASP LYS GLN SEQRES 29 A 388 ILE LEU PHE THR SER ASP VAL HIS GLY LYS PRO ALA LEU SEQRES 30 A 388 TYR LEU ALA THR LEU PRO GLU SER VAL TRP LYS HET MN A 389 1 HET CA A 390 1 HET CA A 391 1 HET ACT A 392 4 HET ACT A 393 4 HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION FORMUL 2 MN MN 2+ FORMUL 3 CA 2(CA 2+) FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *477(H2 O) HELIX 1 1 GLU A 147 TRP A 149 5 3 HELIX 2 2 ASP A 154 TYR A 162 1 9 HELIX 3 3 PHE A 163 LYS A 165 5 3 HELIX 4 4 PRO A 383 LYS A 388 5 6 SHEET 1 A 5 GLN A 6 PRO A 8 0 SHEET 2 A 5 VAL A 71 GLN A 74 -1 O ALA A 72 N ILE A 7 SHEET 3 A 5 ASN A 61 ASP A 66 -1 N ASP A 66 O VAL A 71 SHEET 4 A 5 LYS A 49 GLY A 54 -1 N LEU A 50 O LEU A 65 SHEET 5 A 5 CYS A 33 HIS A 34 -1 N HIS A 34 O GLY A 53 SHEET 1 B 5 ASP A 12 GLN A 15 0 SHEET 2 B 5 GLN A 22 ARG A 25 -1 O ARG A 25 N ASP A 12 SHEET 3 B 5 ALA A 376 THR A 381 -1 O THR A 381 N GLN A 22 SHEET 4 B 5 GLN A 364 SER A 369 -1 N ILE A 365 O ALA A 380 SHEET 5 B 5 SER A 357 PHE A 358 -1 N SER A 357 O LEU A 366 SHEET 1 C 4 PHE A 87 LEU A 88 0 SHEET 2 C 4 ALA A 94 LYS A 99 -1 O PHE A 96 N PHE A 87 SHEET 3 C 4 ASN A 103 ASP A 108 -1 O VAL A 107 N LEU A 95 SHEET 4 C 4 GLU A 114 GLN A 119 -1 O TYR A 118 N LEU A 104 SHEET 1 D 4 TRP A 124 ALA A 132 0 SHEET 2 D 4 LYS A 138 ARG A 145 -1 O ILE A 144 N VAL A 125 SHEET 3 D 4 CYS A 168 ASP A 174 -1 O MET A 171 N GLY A 141 SHEET 4 D 4 SER A 180 GLU A 186 -1 O ILE A 183 N LEU A 170 SHEET 1 E 4 LEU A 190 ARG A 196 0 SHEET 2 E 4 ASP A 199 HIS A 207 -1 O CYS A 206 N GLY A 191 SHEET 3 E 4 MET A 218 ASN A 222 -1 O ILE A 221 N VAL A 203 SHEET 4 E 4 ARG A 229 LYS A 230 -1 O ARG A 229 N LEU A 220 SHEET 1 F 4 GLU A 238 TRP A 245 0 SHEET 2 F 4 LEU A 252 LEU A 258 -1 O VAL A 255 N THR A 241 SHEET 3 F 4 ARG A 264 ALA A 269 -1 O TYR A 267 N TYR A 254 SHEET 4 F 4 ASN A 276 MET A 282 -1 O LEU A 279 N ILE A 266 SHEET 1 G 4 CYS A 285 SER A 290 0 SHEET 2 G 4 LEU A 296 GLY A 301 -1 O VAL A 298 N MET A 289 SHEET 3 G 4 PHE A 321 ASN A 326 -1 O PHE A 321 N GLY A 301 SHEET 4 G 4 THR A 331 ARG A 337 -1 O ALA A 336 N LEU A 322 LINK O MET A 1 CA CA A 390 1555 1555 2.30 LINK OD1 ASP A 57 CA CA A 390 1555 1555 2.41 LINK OD1 ASP A 270 CA CA A 391 1555 1555 2.37 LINK OD2 ASP A 270 CA CA A 391 1555 1555 2.77 LINK OE2 GLU A 272 CA CA A 391 1555 1555 2.34 LINK NE2 HIS A 287 MN MN A 389 1555 1555 2.14 LINK OE1 GLN A 350 MN MN A 389 1555 1555 2.14 LINK ND1 HIS A 353 MN MN A 389 1555 1555 2.14 LINK NE2 HIS A 355 MN MN A 389 1555 1555 2.11 LINK MN MN A 389 OXT ACT A 392 1555 1555 2.10 LINK MN MN A 389 O ACT A 392 1555 1555 2.22 LINK CA CA A 390 O HOH A 589 1555 1555 2.39 LINK CA CA A 390 O HOH A 599 1555 1555 2.40 LINK CA CA A 390 O HOH A 668 1555 1555 2.41 SITE 1 AC1 5 HIS A 287 GLN A 350 HIS A 353 HIS A 355 SITE 2 AC1 5 ACT A 392 SITE 1 AC2 7 MET A 1 ASP A 57 HOH A 585 HOH A 589 SITE 2 AC2 7 HOH A 599 HOH A 609 HOH A 668 SITE 1 AC3 6 GLY A 58 ASP A 270 GLU A 272 HOH A 456 SITE 2 AC3 6 HOH A 497 HOH A 582 SITE 1 AC4 7 HIS A 287 GLN A 350 HIS A 353 HIS A 355 SITE 2 AC4 7 MN A 389 HOH A 426 HOH A 849 SITE 1 AC5 2 LEU A 64 LEU A 109 CRYST1 66.650 75.510 78.510 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015004 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013243 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012737 0.00000