PDB Short entry for 3PFQ HEADER TRANSFERASE 28-OCT-10 3PFQ TITLE CRYSTAL STRUCTURE AND ALLOSTERIC ACTIVATION OF PROTEIN KINASE C BETA TITLE 2 II COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C BETA TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PKC BETA II; COMPND 5 SYNONYM: PKC-BETA; COMPND 6 EC: 2.7.11.13; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PRKCB, PKCB, PRKCB1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS KINASE, PHOSPHORYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.A.LEONARD,B.ROZYCKI,L.F.SAIDI,G.HUMMER,J.H.HURLEY REVDAT 4 06-SEP-23 3PFQ 1 REMARK LINK REVDAT 3 11-APR-18 3PFQ 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQADV REVDAT 2 08-NOV-17 3PFQ 1 REMARK REVDAT 1 02-FEB-11 3PFQ 0 JRNL AUTH T.A.LEONARD,B.ROZYCKI,L.F.SAIDI,G.HUMMER,J.H.HURLEY JRNL TITL CRYSTAL STRUCTURE AND ALLOSTERIC ACTIVATION OF PROTEIN JRNL TITL 2 KINASE C BETA II JRNL REF CELL(CAMBRIDGE,MASS.) V. 144 55 2011 JRNL REFN ISSN 0092-8674 JRNL PMID 21215369 JRNL DOI 10.1016/J.CELL.2010.12.013 REMARK 2 REMARK 2 RESOLUTION. 4.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 4.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.800 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 508 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 4.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 4.14 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2673 REMARK 3 BIN FREE R VALUE : 0.2909 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 48 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4237 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 0.878 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3PFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000062321. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03318 REMARK 200 MONOCHROMATOR : K-B PAIR OF BIOMORPH MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10670 REMARK 200 RESOLUTION RANGE HIGH (A) : 4.000 REMARK 200 RESOLUTION RANGE LOW (A) : 57.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.800 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 4.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2I0E AND 1A25 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, PH 8.5, 3% PEG8K, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 113.89333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.94667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.94667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 113.89333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 PRO A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 PRO A 9 REMARK 465 PRO A 10 REMARK 465 SER A 11 REMARK 465 GLU A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 15 REMARK 465 SER A 16 REMARK 465 THR A 17 REMARK 465 VAL A 18 REMARK 465 ARG A 19 REMARK 465 PHE A 20 REMARK 465 ALA A 21 REMARK 465 ARG A 22 REMARK 465 LYS A 23 REMARK 465 GLY A 24 REMARK 465 ALA A 25 REMARK 465 LEU A 26 REMARK 465 ARG A 27 REMARK 465 GLN A 28 REMARK 465 LYS A 29 REMARK 465 ASN A 30 REMARK 465 VAL A 31 REMARK 465 HIS A 32 REMARK 465 GLU A 33 REMARK 465 VAL A 34 REMARK 465 LYS A 35 REMARK 465 ASN A 36 REMARK 465 HIS A 37 REMARK 465 LYS A 38 REMARK 465 PHE A 39 REMARK 465 THR A 40 REMARK 465 ALA A 41 REMARK 465 ARG A 42 REMARK 465 PHE A 43 REMARK 465 PHE A 44 REMARK 465 LYS A 45 REMARK 465 GLN A 46 REMARK 465 PRO A 47 REMARK 465 THR A 48 REMARK 465 PHE A 49 REMARK 465 CYS A 50 REMARK 465 SER A 51 REMARK 465 HIS A 52 REMARK 465 CYS A 53 REMARK 465 THR A 54 REMARK 465 ASP A 55 REMARK 465 PHE A 56 REMARK 465 ILE A 57 REMARK 465 TRP A 58 REMARK 465 GLY A 59 REMARK 465 PHE A 60 REMARK 465 GLY A 61 REMARK 465 LYS A 62 REMARK 465 GLN A 63 REMARK 465 GLY A 64 REMARK 465 PHE A 65 REMARK 465 GLN A 66 REMARK 465 CYS A 67 REMARK 465 GLN A 68 REMARK 465 VAL A 69 REMARK 465 CYS A 70 REMARK 465 SER A 71 REMARK 465 PHE A 72 REMARK 465 VAL A 73 REMARK 465 VAL A 74 REMARK 465 HIS A 75 REMARK 465 LYS A 76 REMARK 465 ARG A 77 REMARK 465 CYS A 78 REMARK 465 HIS A 79 REMARK 465 GLU A 80 REMARK 465 PHE A 81 REMARK 465 VAL A 82 REMARK 465 THR A 83 REMARK 465 PHE A 84 REMARK 465 SER A 85 REMARK 465 CYS A 86 REMARK 465 PRO A 87 REMARK 465 GLY A 88 REMARK 465 ALA A 89 REMARK 465 ASP A 90 REMARK 465 LYS A 91 REMARK 465 GLY A 92 REMARK 465 PRO A 93 REMARK 465 ALA A 94 REMARK 465 SER A 95 REMARK 465 ASP A 96 REMARK 465 ASP A 97 REMARK 465 PRO A 98 REMARK 465 ARG A 99 REMARK 465 SER A 100 REMARK 465 GLU A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 GLU A 296 REMARK 465 GLY A 297 REMARK 465 ASN A 298 REMARK 465 GLU A 299 REMARK 465 GLU A 300 REMARK 465 LEU A 301 REMARK 465 ARG A 302 REMARK 465 GLN A 303 REMARK 465 LYS A 304 REMARK 465 PHE A 305 REMARK 465 GLU A 306 REMARK 465 ARG A 307 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 ILE A 310 REMARK 465 GLY A 311 REMARK 465 GLN A 312 REMARK 465 GLY A 313 REMARK 465 THR A 314 REMARK 465 LYS A 315 REMARK 465 ALA A 316 REMARK 465 PRO A 317 REMARK 465 GLU A 318 REMARK 465 GLU A 319 REMARK 465 LYS A 320 REMARK 465 THR A 321 REMARK 465 ALA A 322 REMARK 465 ASN A 323 REMARK 465 THR A 324 REMARK 465 ILE A 325 REMARK 465 SER A 326 REMARK 465 LYS A 327 REMARK 465 PHE A 328 REMARK 465 ASP A 329 REMARK 465 ASN A 330 REMARK 465 ASN A 331 REMARK 465 GLY A 332 REMARK 465 ASN A 333 REMARK 465 ARG A 334 REMARK 465 ASP A 335 REMARK 465 ARG A 336 REMARK 465 MET A 337 REMARK 465 LYS A 338 REMARK 465 GLU A 670 REMARK 465 VAL A 671 REMARK 465 LYS A 672 REMARK 465 SER A 673 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 105 124.80 -173.58 REMARK 500 PRO A 112 75.61 -66.27 REMARK 500 PHE A 114 -128.92 -76.14 REMARK 500 ASP A 116 37.71 -75.75 REMARK 500 HIS A 117 -21.64 -174.41 REMARK 500 SER A 120 25.20 -76.76 REMARK 500 LEU A 121 -178.05 60.13 REMARK 500 LYS A 131 -128.02 -71.99 REMARK 500 CYS A 132 118.76 -176.39 REMARK 500 ASP A 133 -73.10 -69.07 REMARK 500 THR A 134 -82.20 -45.64 REMARK 500 CYS A 135 -103.13 -68.04 REMARK 500 MET A 136 -6.87 177.20 REMARK 500 HIS A 140 162.81 -41.77 REMARK 500 ASN A 146 31.87 -72.45 REMARK 500 CYS A 151 -75.32 -140.79 REMARK 500 ASP A 154 57.60 -175.96 REMARK 500 GLU A 157 129.62 70.79 REMARK 500 ARG A 158 -70.02 -133.11 REMARK 500 HIS A 167 148.95 177.03 REMARK 500 ARG A 170 80.53 46.04 REMARK 500 GLU A 171 12.23 58.16 REMARK 500 ARG A 178 -79.99 -77.74 REMARK 500 ASN A 189 19.76 -67.78 REMARK 500 LEU A 191 -144.11 -123.15 REMARK 500 ASP A 193 78.16 -113.12 REMARK 500 TYR A 195 121.12 -175.80 REMARK 500 GLN A 210 114.93 174.75 REMARK 500 SER A 217 98.65 42.22 REMARK 500 SER A 218 134.02 -179.73 REMARK 500 LYS A 232 -158.54 -102.47 REMARK 500 SER A 234 0.05 -63.67 REMARK 500 ASP A 237 53.07 -109.93 REMARK 500 SER A 251 176.63 166.72 REMARK 500 ASN A 253 131.47 -28.56 REMARK 500 MET A 256 -90.79 -126.89 REMARK 500 ASP A 272 119.87 -166.84 REMARK 500 SER A 279 173.27 -59.82 REMARK 500 THR A 340 5.17 -65.29 REMARK 500 SER A 352 4.50 55.13 REMARK 500 PHE A 353 -36.04 172.02 REMARK 500 LYS A 362 111.35 -39.64 REMARK 500 ASP A 365 37.20 -74.91 REMARK 500 PRO A 401 -7.00 -56.83 REMARK 500 THR A 412 -113.89 -71.98 REMARK 500 ASP A 414 -0.95 -154.66 REMARK 500 ASN A 424 44.41 -101.86 REMARK 500 ARG A 437 124.09 -170.76 REMARK 500 ASP A 466 12.53 176.48 REMARK 500 LYS A 468 -154.34 -138.00 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 751 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 115 SG REMARK 620 2 HIS A 140 ND1 105.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 675 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 186 O REMARK 620 2 ASP A 246 OD2 75.0 REMARK 620 3 ASP A 248 OD2 151.2 76.9 REMARK 620 4 ASP A 248 OD1 121.9 78.7 45.0 REMARK 620 5 ASP A 254 OD2 97.5 127.6 104.4 138.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 674 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 187 OD2 REMARK 620 2 ASP A 187 OD1 42.0 REMARK 620 3 ASP A 193 OD1 54.8 94.7 REMARK 620 4 ASP A 246 OD2 57.6 55.2 97.3 REMARK 620 5 TRP A 247 O 141.8 159.2 98.7 107.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 676 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 248 OD2 REMARK 620 2 SER A 251 OG 77.1 REMARK 620 3 ARG A 252 O 74.3 114.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 674 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 675 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 676 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 750 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 751 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 800 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2I0E RELATED DB: PDB REMARK 900 STRUCTURE OF CATALYTIC DOMAIN OF HUMAN PROTEIN KINASE C BETA II REMARK 900 COMPLEXED WITH A BISINDOLYLMALEIMIDE INHIBITOR REMARK 900 RELATED ID: 1A25 RELATED DB: PDB REMARK 900 C2 DOMAIN FROM PROTEIN KINASE C (BETA) REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE VARIANT SEQUENCE CORRESPONDS TO UNP P68403-2, ISOFORM BETA-II. DBREF 3PFQ A 1 673 UNP P68403 KPCB_RAT 1 673 SEQADV 3PFQ GLY A 0 UNP P68403 EXPRESSION TAG SEQADV 3PFQ SER A 71 UNP P68403 CYS 71 ENGINEERED MUTATION SEQADV 3PFQ SER A 217 UNP P68403 CYS 217 ENGINEERED MUTATION SEQADV 3PFQ SER A 622 UNP P68403 CYS 622 ENGINEERED MUTATION SEQRES 1 A 674 GLY MET ALA ASP PRO ALA ALA GLY PRO PRO PRO SER GLU SEQRES 2 A 674 GLY GLU GLU SER THR VAL ARG PHE ALA ARG LYS GLY ALA SEQRES 3 A 674 LEU ARG GLN LYS ASN VAL HIS GLU VAL LYS ASN HIS LYS SEQRES 4 A 674 PHE THR ALA ARG PHE PHE LYS GLN PRO THR PHE CYS SER SEQRES 5 A 674 HIS CYS THR ASP PHE ILE TRP GLY PHE GLY LYS GLN GLY SEQRES 6 A 674 PHE GLN CYS GLN VAL CYS SER PHE VAL VAL HIS LYS ARG SEQRES 7 A 674 CYS HIS GLU PHE VAL THR PHE SER CYS PRO GLY ALA ASP SEQRES 8 A 674 LYS GLY PRO ALA SER ASP ASP PRO ARG SER LYS HIS LYS SEQRES 9 A 674 PHE LYS ILE HIS THR TYR SER SER PRO THR PHE CYS ASP SEQRES 10 A 674 HIS CYS GLY SER LEU LEU TYR GLY LEU ILE HIS GLN GLY SEQRES 11 A 674 MET LYS CYS ASP THR CYS MET MET ASN VAL HIS LYS ARG SEQRES 12 A 674 CYS VAL MET ASN VAL PRO SER LEU CYS GLY THR ASP HIS SEQRES 13 A 674 THR GLU ARG ARG GLY ARG ILE TYR ILE GLN ALA HIS ILE SEQRES 14 A 674 ASP ARG GLU VAL LEU ILE VAL VAL VAL ARG ASP ALA LYS SEQRES 15 A 674 ASN LEU VAL PRO MET ASP PRO ASN GLY LEU SER ASP PRO SEQRES 16 A 674 TYR VAL LYS LEU LYS LEU ILE PRO ASP PRO LYS SER GLU SEQRES 17 A 674 SER LYS GLN LYS THR LYS THR ILE LYS SER SER LEU ASN SEQRES 18 A 674 PRO GLU TRP ASN GLU THR PHE ARG PHE GLN LEU LYS GLU SEQRES 19 A 674 SER ASP LYS ASP ARG ARG LEU SER VAL GLU ILE TRP ASP SEQRES 20 A 674 TRP ASP LEU THR SER ARG ASN ASP PHE MET GLY SER LEU SEQRES 21 A 674 SER PHE GLY ILE SER GLU LEU GLN LYS ALA GLY VAL ASP SEQRES 22 A 674 GLY TRP PHE LYS LEU LEU SER GLN GLU GLU GLY GLU TYR SEQRES 23 A 674 PHE ASN VAL PRO VAL PRO PRO GLU GLY SER GLU GLY ASN SEQRES 24 A 674 GLU GLU LEU ARG GLN LYS PHE GLU ARG ALA LYS ILE GLY SEQRES 25 A 674 GLN GLY THR LYS ALA PRO GLU GLU LYS THR ALA ASN THR SEQRES 26 A 674 ILE SER LYS PHE ASP ASN ASN GLY ASN ARG ASP ARG MET SEQRES 27 A 674 LYS LEU THR ASP PHE ASN PHE LEU MET VAL LEU GLY LYS SEQRES 28 A 674 GLY SER PHE GLY LYS VAL MET LEU SER GLU ARG LYS GLY SEQRES 29 A 674 THR ASP GLU LEU TYR ALA VAL LYS ILE LEU LYS LYS ASP SEQRES 30 A 674 VAL VAL ILE GLN ASP ASP ASP VAL GLU CYS THR MET VAL SEQRES 31 A 674 GLU LYS ARG VAL LEU ALA LEU PRO GLY LYS PRO PRO PHE SEQRES 32 A 674 LEU THR GLN LEU HIS SER CYS PHE GLN THR MET ASP ARG SEQRES 33 A 674 LEU TYR PHE VAL MET GLU TYR VAL ASN GLY GLY ASP LEU SEQRES 34 A 674 MET TYR HIS ILE GLN GLN VAL GLY ARG PHE LYS GLU PRO SEQRES 35 A 674 HIS ALA VAL PHE TYR ALA ALA GLU ILE ALA ILE GLY LEU SEQRES 36 A 674 PHE PHE LEU GLN SER LYS GLY ILE ILE TYR ARG ASP LEU SEQRES 37 A 674 LYS LEU ASP ASN VAL MET LEU ASP SER GLU GLY HIS ILE SEQRES 38 A 674 LYS ILE ALA ASP PHE GLY MET CYS LYS GLU ASN ILE TRP SEQRES 39 A 674 ASP GLY VAL THR THR LYS TPO PHE CYS GLY THR PRO ASP SEQRES 40 A 674 TYR ILE ALA PRO GLU ILE ILE ALA TYR GLN PRO TYR GLY SEQRES 41 A 674 LYS SER VAL ASP TRP TRP ALA PHE GLY VAL LEU LEU TYR SEQRES 42 A 674 GLU MET LEU ALA GLY GLN ALA PRO PHE GLU GLY GLU ASP SEQRES 43 A 674 GLU ASP GLU LEU PHE GLN SER ILE MET GLU HIS ASN VAL SEQRES 44 A 674 ALA TYR PRO LYS SER MET SER LYS GLU ALA VAL ALA ILE SEQRES 45 A 674 CYS LYS GLY LEU MET THR LYS HIS PRO GLY LYS ARG LEU SEQRES 46 A 674 GLY CYS GLY PRO GLU GLY GLU ARG ASP ILE LYS GLU HIS SEQRES 47 A 674 ALA PHE PHE ARG TYR ILE ASP TRP GLU LYS LEU GLU ARG SEQRES 48 A 674 LYS GLU ILE GLN PRO PRO TYR LYS PRO LYS ALA SER GLY SEQRES 49 A 674 ARG ASN ALA GLU ASN PHE ASP ARG PHE PHE THR ARG HIS SEQRES 50 A 674 PRO PRO VAL LEU TPO PRO PRO ASP GLN GLU VAL ILE ARG SEQRES 51 A 674 ASN ILE ASP GLN SER GLU PHE GLU GLY PHE SEP PHE VAL SEQRES 52 A 674 ASN SER GLU PHE LEU LYS PRO GLU VAL LYS SER MODRES 3PFQ TPO A 500 THR MODIFIED RESIDUE MODRES 3PFQ TPO A 641 THR MODIFIED RESIDUE MODRES 3PFQ SEP A 660 SER MODIFIED RESIDUE HET TPO A 500 11 HET TPO A 641 11 HET SEP A 660 10 HET CA A 674 1 HET CA A 675 1 HET CA A 676 1 HET ZN A 750 1 HET ZN A 751 1 HET ANP A 800 31 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 CA 3(CA 2+) FORMUL 5 ZN 2(ZN 2+) FORMUL 7 ANP C10 H17 N6 O12 P3 HELIX 1 1 SER A 264 ALA A 269 1 6 HELIX 2 2 GLU A 281 TYR A 285 5 5 HELIX 3 3 LYS A 375 ASP A 381 1 7 HELIX 4 4 VAL A 384 ALA A 395 1 12 HELIX 5 5 ASP A 427 GLY A 436 1 10 HELIX 6 6 LYS A 439 LYS A 460 1 22 HELIX 7 7 ALA A 509 ALA A 514 1 6 HELIX 8 8 LYS A 520 GLY A 537 1 18 HELIX 9 9 ASP A 545 GLU A 555 1 11 HELIX 10 10 SER A 565 MET A 576 1 12 HELIX 11 11 GLU A 589 GLU A 596 1 8 HELIX 12 12 HIS A 597 ARG A 601 5 5 HELIX 13 13 ASP A 604 GLU A 609 1 6 HELIX 14 14 SER A 622 ARG A 624 5 3 HELIX 15 15 ASN A 625 ASP A 630 1 6 HELIX 16 16 ASP A 644 ARG A 649 1 6 HELIX 17 17 ASN A 650 ILE A 651 5 2 HELIX 18 18 ASP A 652 GLU A 657 5 6 SHEET 1 A 2 ILE A 106 HIS A 107 0 SHEET 2 A 2 GLY A 129 MET A 130 -1 O GLY A 129 N HIS A 107 SHEET 1 B 5 GLU A 222 GLN A 230 0 SHEET 2 B 5 VAL A 172 LYS A 181 -1 N VAL A 175 O PHE A 227 SHEET 3 B 5 ARG A 161 ILE A 168 -1 N ARG A 161 O LYS A 181 SHEET 4 B 5 VAL A 271 LYS A 276 -1 O PHE A 275 N ILE A 162 SHEET 5 B 5 VAL A 288 PRO A 289 -1 O VAL A 288 N LYS A 276 SHEET 1 C 4 GLN A 210 LYS A 211 0 SHEET 2 C 4 PRO A 194 ILE A 201 -1 N LEU A 198 O GLN A 210 SHEET 3 C 4 ARG A 239 ASP A 246 -1 O SER A 241 N LYS A 199 SHEET 4 C 4 ASP A 254 PHE A 255 -1 O ASP A 254 N ASP A 246 SHEET 1 D 6 PHE A 342 VAL A 347 0 SHEET 2 D 6 VAL A 356 ARG A 361 -1 O LEU A 358 N MET A 346 SHEET 3 D 6 LEU A 367 LYS A 374 -1 O TYR A 368 N SER A 359 SHEET 4 D 6 ARG A 415 GLU A 421 -1 O PHE A 418 N LYS A 371 SHEET 5 D 6 LEU A 406 CYS A 409 -1 N SER A 408 O VAL A 419 SHEET 6 D 6 PHE A 661 VAL A 662 -1 O PHE A 661 N CYS A 409 SHEET 1 E 2 ILE A 462 ILE A 463 0 SHEET 2 E 2 LYS A 489 GLU A 490 -1 O LYS A 489 N ILE A 463 SHEET 1 F 2 VAL A 472 LEU A 474 0 SHEET 2 F 2 ILE A 480 ILE A 482 -1 O LYS A 481 N MET A 473 LINK C LYS A 499 N TPO A 500 1555 1555 1.33 LINK C TPO A 500 N PHE A 501 1555 1555 1.33 LINK C LEU A 640 N TPO A 641 1555 1555 1.33 LINK C TPO A 641 N PRO A 642 1555 1555 1.34 LINK C PHE A 659 N SEP A 660 1555 1555 1.33 LINK C SEP A 660 N PHE A 661 1555 1555 1.33 LINK SG CYS A 115 ZN ZN A 751 1555 1555 2.77 LINK SG CYS A 135 ZN ZN A 750 1555 1555 2.66 LINK ND1 HIS A 140 ZN ZN A 751 1555 1555 2.58 LINK O MET A 186 CA CA A 675 1555 1555 2.95 LINK OD2 ASP A 187 CA CA A 674 1555 1555 2.96 LINK OD1 ASP A 187 CA CA A 674 1555 1555 3.15 LINK OD1 ASP A 193 CA CA A 674 1555 1555 3.07 LINK OD2 ASP A 246 CA CA A 674 1555 1555 3.14 LINK OD2 ASP A 246 CA CA A 675 1555 1555 2.87 LINK O TRP A 247 CA CA A 674 1555 1555 2.80 LINK OD2 ASP A 248 CA CA A 675 1555 1555 2.80 LINK OD1 ASP A 248 CA CA A 675 1555 1555 2.95 LINK OD2 ASP A 248 CA CA A 676 1555 1555 3.08 LINK OG SER A 251 CA CA A 676 1555 1555 3.08 LINK O ARG A 252 CA CA A 676 1555 1555 2.85 LINK OD2 ASP A 254 CA CA A 675 1555 1555 2.95 CISPEP 1 ILE A 201 PRO A 202 0 -0.07 SITE 1 AC1 5 ASP A 187 ASP A 193 ASP A 246 TRP A 247 SITE 2 AC1 5 ASP A 248 SITE 1 AC2 5 MET A 186 ASP A 187 ASP A 246 ASP A 248 SITE 2 AC2 5 ASP A 254 SITE 1 AC3 4 ASP A 248 SER A 251 ARG A 252 ASP A 254 SITE 1 AC4 3 HIS A 102 THR A 134 CYS A 135 SITE 1 AC5 4 CYS A 115 CYS A 118 HIS A 140 CYS A 143 SITE 1 AC6 7 ALA A 369 LYS A 371 MET A 420 GLU A 421 SITE 2 AC6 7 TYR A 422 VAL A 423 ASP A 484 CRYST1 114.270 114.270 170.840 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008751 0.005053 0.000000 0.00000 SCALE2 0.000000 0.010105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005853 0.00000